BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41040.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934924 jgi|Araly1|934924|scaffold_402912.1 1772 0.0
> Ahg934924 jgi|Araly1|934924|scaffold_402912.1
Length=1095
Score = 1772 bits (959), Expect = 0.0
Identities = 1051/1096 (96%), Gaps = 4/1096 (0%)
Strand=Plus/Plus
Query 108 CCATTTCTCTGCTCAAATGGCGATGGCGGCTCTAACATCTTCTTCTTCTGCTATTACTCT 167
|||||||||||||| | |||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 CCATTTCTCTGCTCTAGTGGCGATGGCCGCACTAACATCTTCTTCTTCTGCTATTACTCT 60
Query 168 CCTCAACAAACCTTTCTTACCTAACCGctcttccttcttctcctctgattcacaatctcc 227
||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||| |
Sbjct 61 CCTCAACAAACCTTTCTTACCTAACCGCTCTTCTTTCTTCTCCTCTAATTCGCACTCTAC 120
Query 228 tcttctccgattctctgcttctacctctgttcgttctcGTTTTCCATCCGCAGCCATAAG 287
|||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||
Sbjct 121 TCTTCTCCGATTCTCTGCTTCTGCCTCTGTTCGTCCCCGTTTTCCATCCGCCGCCATAAG 180
Query 288 CGCCGTTGCTCCCA-AATCGGACATAAATAAAAATGAAACTCCAAAGATCGAAATAGAGG 346
| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CACCGTTGCT-CCAGAATCGGACATAAATAAAAATGAAACTCCAAAGATTAAAATAGAGG 239
Query 347 AAACTCAAGTGTTCGCGTGTCCTGTTTGCTACGAACCACTTATGAGGAAAGGACCTTCAG 406
|| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 240 AAGCTCAAGTGTTCGCGTGTCCTGTTTGCTACCAACCACTTATGAGAAAAGGACCTTCAG 299
Query 407 GTATCAACCTACAAGCAATCTACAGGTCTGGATTCAAGTGTGGACAATGTAACAAGACAT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTATCAACCTACAAGCAATCTACAGGTCTGGATTCAAGTGTGGACAATGTAACAAGACAT 359
Query 467 ATTCTAGCAAAGATGAATACTTGGATCTTACTGTCACTGCTGATTTGGATGATTATAATG 526
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACTCTAGCAAAGATGAATACTTGGATCTTACTGTCACTGCTGATTTGGATGATTATAATG 419
Query 527 AAGTCAAACCCATTACTACCGAGCTCTTTCGGAGTCCATTAGTATCATTTTTGTATGAAA 586
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGTCAAACCCATTACTACCGAACTCTTTCGGAGTCCATTAGTATCATTTTTGTATGAAA 479
Query 587 GAGGTTGGCGTCAAGCCTTTAAGCGAAGCGGGTTTCCCGGTCCAGATGAAGAGTTTAGAA 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAGGTTGGCGTCAAGCCTTTAAGCGAAGCGGGTTTCCCGGTCCAGATGAAGAGTTTAGAA 539
Query 647 TGGCTGAGGAATACTTCAAAGAAGCAGAAGGTGGGCTTCTTGTGGATGTTAGTTGCGGAA 706
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 540 TGGCTGAGGAATACTTCAAAGAATCAGAAGGTGGGATTCTTGTGGATGTTAGTTGCGGAA 599
Query 707 GCGGTTTGTTTTCCCGCAAATTTGCGCAGTCTGGCAAATACTCTGGCGTGATTGCTTTAG 766
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 600 GCGGTTTGTTTTCCCGCAAATTTGCAAAGTCTGGCAAATACTCTGGCGTGATTGCTCTCG 659
Query 767 ACTACTCTGAAAACATGCTTCGTCAGTGCAAAGAATTCATTAAAAATGATAATACTTTCG 826
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 660 ATTACTCTGAAAACATGCTTCGTCAATGCAAAGAATTCATCAAAAATGATAATACTTTCG 719
Query 827 ACAACTCAACTAATATAGCTGTTGTGAGAGCAGACGTTTCTCGCCTCCCTTTCCCTTCGG 886
||||||||||||||||||| || ||||||||||| |||||||||||||||||||| || |
Sbjct 720 ACAACTCAACTAATATAGCAGTAGTGAGAGCAGATGTTTCTCGCCTCCCTTTCCCATCAG 779
Query 887 GTTCTGTTGACGCGGTTCATGCTGGTGCAGCCTTGCACTGTTGGCCTTCTCCTACAAATG 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTTCTGTTGACGCGGTTCATGCTGGTGCAGCCTTGCACTGTTGGCCTTCTCCTACAAATG 839
Query 947 CTATTGCTGAGATCTGTCGTGTTCTAAGAAGCGGAGGTGTGTTTGTCGGGACAACGTTTC 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTATTGCTGAGATCTGTCGTGTTCTAAGAAGCGGAGGTGTGTTTGTCGGGACAACGTTTC 899
Query 1007 TCAGATACAGTCCTTCGACTCCTTGGATTATTCGTCCTTTCCAATCGAGAATTCTGCAGA 1066
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCAGATACAGCCCTTCGACTCCTTGGATTATTCGTCCTTTCCAATCGAGAATTCTGCAGA 959
Query 1067 GCTACAATTACTTGATGCAGGATGAGATCAAGGATGTGTGCACATCATGTGGTCTCACAG 1126
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTTACAATTACTTGATGCAGGATGAGATCAAGGATGTGTGCACATCATGTGGTCTCACAG 1019
Query 1127 ATTATGAAGATTATATTCAGGATTCTTTTATCATGTTTACTGCTCGCAAGCCCTA--GAG 1184
||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 1020 ATTATGAAGATTATATTCAGGATTCTTTTATTATGTTCACTGCTCGCAAGCCTTAAAGAG 1079
Query 1185 AGCCCTCTCTTCATGT 1200
|||||||| |||||||
Sbjct 1080 AGCCCTCTATTCATGT 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5