BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41060.1 Length=1787 Score E Sequences producing significant alignments: (Bits) Value Ahg934926 jgi|Araly1|934926|scaffold_402914.1 2087 0.0 Ahg486125 jgi|Araly1|486125|fgenesh2_kg.5__2117__AT3G56860.3 702 0.0 > Ahg934926 jgi|Araly1|934926|scaffold_402914.1 Length=1384 Score = 2087 bits (1130), Expect = 0.0 Identities = 1309/1392 (94%), Gaps = 26/1392 (2%) Strand=Plus/Plus Query 132 AAAA-CCGCCAATTCCGTTATGACAAAGAAGAGAAAGCTCGAATCTGAATCCAACGAAAC 190 |||| || |||||||| | ||| ||||||||||||||||||||||||||||||||||||| Sbjct 2 AAAACCCACCAATTCCATCATGGCAAAGAAGAGAAAGCTCGAATCTGAATCCAACGAAAC 61 Query 191 GTCAGAGCCGACGGAGAAGCAGCAGCAGCAATGTGAAAAAGAGGATCCGGAAATCAGAAA 250 |||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| Sbjct 62 GTCAGAGCCGACGGAG-A--AGCAGCTGCAATGTGAAAAAGAGGATCCGGAAATCAGAAA 118 Query 251 TGTTGATAATCAAAGAGACGACGACGAACAAGTAGTA-GAGCAAGACACACTAAAGGAGA 309 || |||||| || ||||||||||||||| |||||||| || |||||| |||| | | Sbjct 119 TGATGATAAACAGAGAGACGACGACGAAGAAGTAGTAGGA-CAAGACGCACT-----A-A 171 Query 310 TGCACGAAGAGGAAGCTAAAGGTGAAGATAACATAGAAGCGGAGACGTCGTCCGGATCTG 369 | | ||||||||||||||||||||||| | ||| |||||||||||||||||||||| Sbjct 172 ---A-G--GAGGAAGCTAAAGGTGAAGATAATACAGAGGCGGAGACGTCGTCCGGATCTG 225 Query 370 GGAATCAAGGAAATGAGGATGATGACGAAGAAGAACCTATTGAGGATCTATTGGAACCGT 429 |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 226 GGAATCGGGGAAATGAGGATGATGACGAAGAAGAACCCATCGAGGATCTATTGGAACCGT 285 Query 430 TTTCAAAGGATCAACTTTTGATTCTTCTCAAGGAAGCTGCAGAGAGACATCGCGATGTAG 489 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 286 TTTCAAAAGATCAACTTTTGATTCTTCTCAAGGAAGCTGCAGAGAGACATCGCGATGTTG 345 Query 490 CTAATCGAATCCGGATTGTGGCGGATGAAGA-TCTTGTTCATCGTAAGATCTTCGTTCAC 548 || |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 346 CTGATCGAATCCGGATTGTGGCGGATGAAGATTC-TGTTCATCGTAAGATCTTCGTTCAC 404 Query 549 GGGCTTGGATGGGATACTAAAGCTGATTCACTTATCGACGCTTTTAAACAGTACGGAGAG 608 ||||||||||||||||||||||| || |||||||||| |||||||| || ||||||||| Sbjct 405 GGGCTTGGATGGGATACTAAAGCCGAAACACTTATCGAAGCTTTTAAGCAATACGGAGAG 464 Query 609 ATTGAAGATTGCAAATGTGTGGTTGATAAGGTATCTGGGCAATCTAAAGGTTATGGCTTT 668 || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 465 ATCGAAGATTGCAAATGTGTGGTTGATAAGATTTCTGGGCAATCTAAAGGTTATGGCTTT 524 Query 669 ATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAACGCTCTTAAGCAGCCTCAGAAGAAGATT 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 ATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAACGCTCTTAAGCAGCCTCAGAAGAAGATT 584 Query 729 GGAACTCGTATGACTGCGTGCCAGCTGGCGTCTATAGGACCTGTTCAGGGGAACCCTGTT 788 ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 585 GGAACTCGTATGACTGCTTGCCAGCTGGCGTCTATAGGACCTGTTCAGGGAAACCCTGTC 644 Query 789 GTGGCTCCTGCTCAGCATTTCAATCCTGAGAATGTTCAGAGGAAGATTTATGTCAGTAAC 848 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 645 GTGGCTCCTGCTCAGCATTTCAATCCTGAGAATGTTCAGAGGAAGATCTATGTTAGTAAC 704 Query 849 GTTAGTGCAGA-CATTGATCCGCAGAAGTTGCTGGAGTTTTTCTCAAGGTTTGGGGAGAT 907 ||||||||||| | |||||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct 705 GTTAGTGCAGATC-TTGATCCGCAGAAGCTGCTGGAGTTTTTTTCAAGATTTGGGGAGAT 763 Query 908 AGAAGAAGGTCCTTTGGGGCTTGATAAAGCTACTGGGAGACCTAAAGGTTTCGCTTTGTT 967 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 764 TGAAGAAGGTCCTTTGGGGCTTGATAAAGTTACTGGGAGACCTAAAGGTTTCGCTTTGTT 823 Query 968 TGTCTATAGATCCCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGA 1027 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 TGTCTATAGATCCCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGA 883 Query 1028 AGGCCATGTCTTGCATTGCCACAAAGCAAATGATGGGCCAAAACAGGTTAAGCAACATCA 1087 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 884 AGGCCATGTCTTGCATTGCCACAAAGCAAATGATGGGCCTAAACAGGTTAAGCAACATCA 943 Query 1088 ACATAACCATAACTCTCACAATCAAAATTCCCGTTACCAAAGGAACGACAACAATGGTTA 1147 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 944 ACATAACCATAACTCTCACAATCAAAATTCCCGCTACCAAAGGAACGACAGCAATGGTTA 1003 Query 1148 TGGTGCCCCTGGAGGCCATGGACATTTCATAGCTGGTAATAACCAAGCTGTGCAGGCGTT 1207 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1004 TGGTGCACCTGGAGGCCATGGACATTTCATAGCTGGTAATAACCAAGCTGCGCAGGCGTT 1063 Query 1208 TAATCCGGCCATTGGCCAGGCCCTCACAGCTTTGCTGGCATCTCAGGGTGCTGGGTTGGG 1267 ||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1064 TAACCCGGCTATTGGCCAAGCCCTTACAGCTTTGCTGGCATCTCAGGGTGCTGGGTTGGG 1123 Query 1268 TTTAAACCAAGCATTTGGGCAGGCTTTGTTGGGGACATTAGGGACAGCTAGCCCAGGAGC 1327 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1124 TTTGAACCAAGCATTTGGGCAGGCTTTGTTGGGGACATTAGGGACAGCTAGCCCAGGAGC 1183 Query 1328 TGTAGGTGGAATGCCAAGTGGCTATGGTACTCAAGCAAATATCTCACCTGGGGTCTATCC 1387 |||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1184 TGTAGGAGGAATGCCAAGTGGCTATGGTACTCAAGCAAATATCACGCCTGGGGTCTATCC 1243 Query 1388 TGGGTACGGTGCTCAAGCCGGGTACCAGGGCGGTTATCAGACTCAGCAACCTGGTCAGGG 1447 |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1244 TGGGTACGGTGCCCAAGCCGGGTTTCAGGGCGGTTATCAGACTCAGCAACCTGGTCAGGG 1303 Query 1448 CGGTGCGGGAAGAGGGCAGCATGGTGCTGGGTATGGTGGTCCTTACATGGGTCGTTAGAT 1507 |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1304 CGGTGCTGGAAGAGGGCAGCATGGTGTTGGGTATGGTGGTCCTTACATGGGTC---AGAT 1360 Query 1508 -TAGCCACTCAG 1518 ||||||||||| Sbjct 1361 GTAGCCACTCAG 1372 > Ahg486125 jgi|Araly1|486125|fgenesh2_kg.5__2117__AT3G56860.3 Length=2242 Score = 702 bits (380), Expect = 0.0 Identities = 959/1223 (78%), Gaps = 102/1223 (8%) Strand=Plus/Plus Query 348 GCGGAGACGTCGTCCGGATCTGGGAATCAAGGAAATG---AGGATGATGACGAAGAAGAA 404 |||| | || |||| ||||||||||||||||| ||| | |||||||| || || || Sbjct 312 GCGGCGGCGACGTCTGGATCTGGGAATCAAGGGGATGTAAATGATGATGATGACGATGAG 371 Query 405 CCTATTGAGGATCTATTGGAACCGTTTTCAAAGGATCAACTTTTGATTCTTCTCAAGGAA 464 || ||| ||||||| |||||||||||||||||||| |||||||||| |||||| || ||| Sbjct 372 CCAATTCAGGATCTGTTGGAACCGTTTTCAAAGGAACAACTTTTGAGTCTTCTTAAAGAA 431 Query 465 GCTGCAGAG-AGACATCGCGATGTAGCTAATCGAATCC-GGATTGTGGCGGATGAAGATC 522 || || ||| || |||| |||||||| |||||||||| ||| || || ||||| || | Sbjct 432 GCAGCGGAGAAG-CATCTTGATGTAGCCAATCGAATCCGGGA-AGTAGCTGATGAGGACC 489 Query 523 TTGTTCATCGTAAGATCTTCGTTCACGGGCTTGGATGGGATACTAAAGCTGATTCACTTA 582 |||||| || ||||||||||| ||||| ||||| |||||||| ||| | || | |||| Sbjct 490 CTGTTCACCGGAAGATCTTCGTGCACGGTCTTGGTTGGGATACCAAAACAGAGACGCTTA 549 Query 583 TCGACGCTTTTAAACAGTACGGAGAGATTGAAGATTGCAAATG-TGTGGTTGATAAGGTA 641 |||| |||||||| |||||||||||||| ||||||||| || | |||| |||||||| | Sbjct 550 TCGAAGCTTTTAAGCAGTACGGAGAGATCGAAGATTGC-AAGGCTGTGTTTGATAAGATC 608 Query 642 TCTGGGCAATCTAAAGGTTATGGCTTTATCCTCTTTAAGTCAAGGTCTGGTGCTCGTAAC 701 || ||| |||||||||||||||||||||| | || ||||| |||| |||||||| || Sbjct 609 TCAGGGAAATCTAAAGGTTATGGCTTTATTTTGTTCAAGTCTCGGTCAGGTGCTCGCAAT 668 Query 702 GCTCTTAAGCAGCCTCAGAAGAAGATTGGAACTCGTATGACTGCGTGCCAGCTGGCGTCT 761 || |||||||||||||||||||||||||| | ||||||||| || || || |||| ||| Sbjct 669 GCACTTAAGCAGCCTCAGAAGAAGATTGGTAGTCGTATGACGGCATGTCAATTGGCTTCT 728 Query 762 ATAGGACCTGT-TCAGG-GGAAC-CC--T-G-T--T---G-TG-----GCTCCTGCTCAG 803 | ||||||||| | || ||| | || | | | | | || || ||||||||| Sbjct 729 AAAGGACCTGTCTTTGGTGGAGCTCCTATCGCTGCTGCAGCTGTCTCAGCGCCTGCTCAG 788 Query 804 CATTTC-AATC-CTGAG-A-ATGTTCAGAGGAAGATTTATGTCAGTAACGTTAGTGCAGA 859 || ||| || | ||||| | | | |||| ||||||||||| ||||| ||| | ||||| Sbjct 789 CA-TTCGAA-CTCTGAGCACACG--CAGAAAAAGATTTATGTTAGTAATGTTGGAGCAGA 844 Query 860 -CATTGATCCGCAGAAGTTGC-TGGAGTTTTTCTCAAGGTTTGGGGAGATAGAAGAAGGT 917 | ||||||| |||||||| | ||| ||| ||||||| |||||| ||||| ||||||||| Sbjct 845 GC-TTGATCCACAGAAGTTACTTGG-GTTCTTCTCAAAGTTTGGAGAGATTGAAGAAGGT 902 Query 918 CCTTTGGGGCTTGATAAAG-CTACTGGGAGACCTAAAGGTTTC-GCTTTGTTTGTCTAT- 974 |||||||| |||||| ||| |||||||||||||||||||||| | | | ||||| ||| Sbjct 903 CCTTTGGGTCTTGAT-AAGTTTACTGGGAGACCTAAAGGTTTCTG-TCTCTTTGTTTATA 960 Query 975 AGATC-CCTAGAAAGTGCCAAGAAGGCATTGGAGGAGCCACACAAGACTTTTGAAGGCCA 1033 || || || ||||| ||||||| ||| ||||||||||||||||||||||||||||| || Sbjct 961 AG-TCGGCT-GAAAGCGCCAAGAGGGCTTTGGAGGAGCCACACAAGACTTTTGAAGGTCA 1018 Query 1034 TGTCTTGCATTGCCACAAAGCAAAT-GATGGGCCAAAACAGGTTAAGCA--A-CATCAAC 1089 | ||||||||||||| ||||| | | ||||| || |||| || ||||| | ||||| | Sbjct 1019 TATCTTGCATTGCCAGAAAGCTA-TCGATGGTCCCAAACCGGGCAAGCAGCAGCATCACC 1077 Query 1090 ATAACC-ATAACTCTCACAATCAAAATTCC-CGTTACCAAAGGAACGACAACAATGGTTA 1147 |||||| | | | | ||||| ||| | || |||||||||||||| || ||||||||||| Sbjct 1078 ATAACCCACA-CGCCCACAA-CAA--T-CCTCGTTACCAAAGGAATGATAACAATGGTTA 1132 Query 1148 TGGTGCC-CCTGGAGGCCATGGACATTTCATAGCTGGTAATA-ACC---AA-GC-TG-T- 1198 |||| || |||||||| ||||||||| |||| |||||||| | | || | || | Sbjct 1133 TGGT-CCGCCTGGAGGTCATGGACATCTCATGGCTGGTAACCCAGCTGGAATGGGTGGTC 1191 Query 1199 --GC-A----GGCGTTTAATCCGGCCATTGGCCAGGCCCTCACAGCTTTGCTGGCATCTC 1251 || | |||| | || ||||||||||| |||||| | |||||| | |||||||||| Sbjct 1192 CAGCGACACAGGCGATAAACCCGGCCATTGGACAGGCCTTGACAGCTATACTGGCATCTC 1251 Query 1252 AGGGTGCTGGGTTGGGTTTAAA-CCAAGC-ATTTGGGCAGGCTTTGTTGGGGACATTAGG 1309 |||| ||||| |||| ||| || || || ||| || |||||||||||||| | || || Sbjct 1252 AGGGAGCTGGTTTGGCTTTTAATCCG-GCGATT-GGACAGGCTTTGTTGGGTTCCTTGGG 1309 Query 1310 GACAGCTA--GCCC-AGGAGCTGTA-GG--T-GGAATGCCAAGTGGCTATGGTACTCAAG 1362 |||||||| | | | | | | | || | |||||||||| ||| ||||||||||||| Sbjct 1310 GACAGCTACAGGCGTAA-ACCCGAATGGAGTTGGAATGCCAACTGGTTATGGTACTCAAG 1368 Query 1363 CAAATATCTCACCTGGGGTCTAT-CCTGGGTACGGTGCTCAAGCCGG-GTACCAGGGCGG 1420 | ||| |||| |||| | || |||||||||||| | ||| || | || || || || Sbjct 1369 C---TATGGCACC-GGGGACAATGCCTGGGTACGGTACACAA-CCTGCGTTGCAAGGTGG 1423 Query 1421 TTATCAGACTC-AGCAACCTGGTCAGGGCGGTGCGGGAAGAGGGCAGCATGGTG-CTGGG 1478 ||||||||||| | ||||||||||| |||||| | | |||||||| ||||||| | ||| Sbjct 1424 TTATCAGACTCCA-CAACCTGGTCAAGGCGGTACAAGCAGAGGGCAACATGGTGTC-GGG 1481 Query 1479 T-AT--GGTGGTCCTTACATGGG 1498 || |||| ||| |||||||| Sbjct 1482 CCATACGGTGCTCCCTACATGGG 1504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67076921445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5