BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41110.2 Length=837 Score E Sequences producing significant alignments: (Bits) Value Ahg934930 jgi|Araly1|934930|scaffold_402918.1 656 0.0 Ahg938640 jgi|Araly1|938640|scaffold_502831.1 477 5e-134 Ahg947442 jgi|Araly1|947442|scaffold_703671.1 388 3e-107 Ahg484819 jgi|Araly1|484819|fgenesh2_kg.5__811__AT3G43810.1 368 3e-101 Ahg483180 jgi|Araly1|483180|fgenesh2_kg.4__2240__AT2G41120.1 176 2e-43 Ahg934929 jgi|Araly1|934929|scaffold_402917.1 122 3e-27 > Ahg934930 jgi|Araly1|934930|scaffold_402918.1 Length=490 Score = 656 bits (355), Expect = 0.0 Identities = 381/393 (97%), Gaps = 3/393 (1%) Strand=Plus/Plus Query 262 GGTTGCATTACCACAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAACC 321 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 96 GGTTGCATCACCACAAAGGAGCTCGGTACCGTGATGCGTTCCCTCGGTCAAAACCCGACC 155 Query 322 GAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGAT 381 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 156 GAAGCTGAGCTTCAGGACATGATCAACGAAGTGGATGCGGATGGTAACGGAACCATTGAT 215 Query 382 TTCCCGGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGAA 441 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 216 TTCCCTGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGAA 275 Query 442 CTCAAGGAAGCTTTCAGAGT-TTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA 500 |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| Sbjct 276 CTCAAGGAAGCTTTCAGAGTCTTT-GACAAAGATCAGAACGGTTTCATCTCAGCTGCTGA 334 Query 501 ATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGAT 560 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 335 ATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTAACTGATGAAGAAGTTGATGAGAT 394 Query 561 GATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAGGT 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 395 GATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTCAAGGT 454 Query 621 TATGATGGCTAAGTGAGGATTG-AAACAACTTC 652 ||||||||| |||||||||||| |||||||||| Sbjct 455 TATGATGGCCAAGTGAGGATTGGAAACAACTTC 487 Score = 152 bits (82), Expect = 4e-36 Identities = 97/104 (93%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 133 aaaagaaaagaaaaaaCAATGGCGGATCAGCTCACAGACGATCAGATCTCAGAATTCAAG 192 |||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3 AAAAAAAAACAAAAAGCAATGGCGGATCAGCTCACTGACGATCAGATCTCAGAATTCAAG 62 Query 193 GAAGCCTTCAGCTTATTCGACAAGGATGGTGATGGTATGCTTCA 236 ||||| |||||||||||||||||||||||||||||| ||| ||| Sbjct 63 GAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGT-TGCATCA 105 > Ahg938640 jgi|Araly1|938640|scaffold_502831.1 Length=575 Score = 477 bits (258), Expect = 5e-134 Identities = 337/376 (90%), Gaps = 2/376 (1%) Strand=Plus/Plus Query 262 GGTTGCATTACCACAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAACC 321 |||||||||||||| ||||||||||| || |||||||||||||| || |||||||||||| Sbjct 97 GGTTGCATTACCACCAAGGAGCTTGGGACTGTGATGCGTTCCCTTGGACAAAACCCAACC 156 Query 322 GAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGAT 381 ||||| |||||||| ||||||||||| ||||| || || ||||||||||| ||||||||| Sbjct 157 GAAGCAGAGCTTCAAGACATGATCAATGAAGTGGACGCTGATGGTAACGGTACCATTGAT 216 Query 382 TTCCCGGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGAA 441 ||||| |||||||||||||| |||||| | || ||||||||||| |||||||||||||| Sbjct 217 TTCCCAGAGTTCTTGAACCTCATGGCTCGTAAGATGAAGGACACCGACTCTGAGGAAGAG 276 Query 442 CTCAAGGAAGCTTTCAGAGTTTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA- 500 ||||||||||| ||| | ||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 277 CTCAAGGAAGCATTCCGGGTTTTTGACAAGGACCAGAACGGTTTCATTTCAGCCGCTGAG 336 Query 501 ATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGAT 560 || | ||||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 337 CTT-CGTCATGTGATGACAAACCTTGGTGAGAAGCTTACTGATGAAGAAGTTGATGAGAT 395 Query 561 GATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAGGT 620 ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 396 GATCAAGGAAGCTGATGTTGATGGTGATGGTCAGATTAACTATGAAGAGTTTGTTAAGGT 455 Query 621 TATGATGGCTAAGTGA 636 ||||||||||||||| Sbjct 456 CATGATGGCTAAGTGA 471 Score = 137 bits (74), Expect = 1e-31 Identities = 94/103 (91%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 132 Gaaaa-gaaaag-aaaaaaCAATGGCGGATCAGCTCACAGACGATCAGATCTCAGAATTC 189 ||||| || ||| ||||||||||||||||||||||||| |||||||||||||| || || Sbjct 1 GAAAAGGAGAAGAAAAAAACAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTT 60 Query 190 AAGGAAGCCTTCAGCTTATTCGACAAGGATGGTGATGGTATGC 232 |||||||| |||||||||||||||||||||||||||||| ||| Sbjct 61 AAGGAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGT-TGC 102 > Ahg947442 jgi|Araly1|947442|scaffold_703671.1 Length=495 Score = 388 bits (210), Expect = 3e-107 Identities = 323/378 (85%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 262 GGTTGCATTACCA-CAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAAC 320 |||||||| || | |||| ||||| || || || |||||||| || || ||||||||||| Sbjct 101 GGTTGCATCACAACCAAA-GAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAAC 159 Query 321 CGAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGA 380 || ||||||||||| |||||||||||||| |||||||| ||||| ||||| || ||||| Sbjct 160 AGAGGCTGAGCTTCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACAATTGA 219 Query 381 TTTCCCGGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGA 440 |||||| |||||| ||||||| ||||||| ||| ||||| ||||||||||| |||||||| Sbjct 220 TTTCCCAGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCAGAGGAAGA 279 Query 441 ACTCAAGGAAGCTTTCAGAGTTTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA 500 || || ||||| ||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 280 GCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTGA 339 Query 501 ATTGA-GACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGA 559 | | | ||||||||||| || || || |||||||| |||||||| |||||||| |||| Sbjct 340 GCT-ACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAGGAAGTTGAAGAGA 398 Query 560 TGATTAAG-GAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAG 618 |||| | || |||||||||||||| ||||||||||| ||||| || |||||||| ||| Sbjct 399 TGATCC-GTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAGGAGTTTGTCAAG 457 Query 619 GTTATGATGGCTAAGTGA 636 ||||||||||||||||| Sbjct 458 ATTATGATGGCTAAGTGA 475 > Ahg484819 jgi|Araly1|484819|fgenesh2_kg.5__811__AT3G43810.1 Length=750 Score = 368 bits (199), Expect = 3e-101 Identities = 320/379 (84%), Gaps = 6/379 (2%) Strand=Plus/Plus Query 262 GGTTGCATTACCACAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAACC 321 |||||||| || |||||||||||||| || |||||| | || ||||| || |||||||| Sbjct 164 GGTTGCATCACTACAAAGGAGCTTGGGACTGTGATGAGATCACTCGGGCAGAACCCAACA 223 Query 322 GAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGAT 381 |||||||||||||||||||||||||||||||| ||||| ||||| ||||| || || ||| Sbjct 224 GAAGCTGAGCTTCAGGACATGATCAACGAAGTAGATGCAGATGGGAACGGGACAATAGAT 283 Query 382 TTCCCGGAGTTCTTGAACCTAATGGCTA-GGAAAATGAAGGACACTGACTCTGAGGAAGA 440 |||||||||||| ||||||| ||||| | |||| ||||| |||||||| || ||||| || Sbjct 284 TTCCCGGAGTTCCTGAACCTTATGGC-ACGGAAGATGAAAGACACTGATTCAGAGGAGGA 342 Query 441 ACTCAAGGAAGCTTTCAGAGTTTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA 500 || |||||||| ||||| ||||| ||||| |||||||||||||||||||| || ||||| Sbjct 343 GCTTAAGGAAGCCTTCAGGGTTTTTGACAAGGACCAGAACGGTTTCATCTCGGCAGCTGA 402 Query 501 A-TTGAGACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGA 559 || | || |||||||| || || || |||||||| || ||||| ||||| ||||||| Sbjct 403 GCTTC-GTCACGTGATGACAAATCTTGGGGAGAAGCTGACAGATGAGGAAGTCGATGAGA 461 Query 560 TGATTA-AGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAG 618 |||| || | |||||||| ||||||||||||||||||||||| |||||||| || || Sbjct 462 TGATCCGAG-AGGCTGATGTCGATGGTGATGGTCAGATCAACTATGAAGAGTTCGTCAAA 520 Query 619 GTTATGATGGCTAAGTGAG 637 || |||||||| ||||||| Sbjct 521 GTCATGATGGCAAAGTGAG 539 > Ahg483180 jgi|Araly1|483180|fgenesh2_kg.4__2240__AT2G41120.1 Length=970 Score = 176 bits (95), Expect = 2e-43 Identities = 108/114 (95%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 725 CTAAAATTTCATTCATGGCTGGTTTTTGCTGGTTAAAAAGACAGGAATGTTATGTGTTTT 784 |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 970 CTAAAATTTCATTCATGGCTGGTTTTTGGTGGTTAAAAAGACAGGGGTGTTATGTGTTTT 911 Query 785 TACCTT-TTGTCTAAATGACTCATTGTTCATGTTATTGACAGGTTCAGAACCTG 837 || ||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 910 TA-CTTCTTGTCTAAATGACTCATTGTTCATGTTATTGATAGGTTCAGAACCTG 858 > Ahg934929 jgi|Araly1|934929|scaffold_402917.1 Length=736 Score = 122 bits (66), Expect = 3e-27 Identities = 82/89 (92%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 143 aaaaaaCAATGGCGG---ATCAGCTCACAGACGATCAGATCTCAGAATTCAAGGAAGCCT 199 |||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| Sbjct 284 AAAAAACAATGGTGGATTATCAGCTCACTGACGATCAGATCTCAGAATTCAAGGAAGCCT 343 Query 200 TCAGCTTATTCGACAAGGATGGTGATGGT 228 || |||||||||||||| ||||||||||| Sbjct 344 TCCGCTTATTCGACAAGAATGGTGATGGT 372 Score = 111 bits (60), Expect = 6e-24 Identities = 117/143 (82%), Gaps = 10/143 (7%) Strand=Plus/Plus Query 301 TCCCTCGGTCAAAACCCAACCGAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCG 360 ||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||| Sbjct 409 TCCCTCGGTGAAAACCAAACAAAAGCTGAGCTTCAGGACATGATCAACGAAGCAGATGCA 468 Query 361 GATGGTAACGGAACCATT-GATTTCCCGGAGTTCT-TGAACCTAATGGCTAGGAAAATGA 418 |||||| | |||||||| | |||||| ||||| | || |||||||| ||||||||| Sbjct 469 GATGGTGATGGAACCATCAG-TTTCCCTGAGTT-TGTGTGTGTAATGGCTGGGAAAATGA 526 Query 419 AGGACACTGACTCTGAGGAAGAA 441 | |||||||||||||||| Sbjct 527 ----C--TGACTCTGAGGAAGAA 543 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30955808604 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5