BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41120.1
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483180 jgi|Araly1|483180|fgenesh2_kg.4__2240__AT2G41120.1 1467 0.0
> Ahg483180 jgi|Araly1|483180|fgenesh2_kg.4__2240__AT2G41120.1
Length=970
Score = 1467 bits (794), Expect = 0.0
Identities = 917/976 (94%), Gaps = 10/976 (1%)
Strand=Plus/Plus
Query 26 TTTGACTTTGATAATGGCAGTTTCTTCGAAACATTTCCAGGttccttcatctttcacgct 85
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGACTTTGATAATGGCACTTTCTCCGAAACATTTCCAGGTTCCTTCATCTTTCACGCT 60
Query 86 tcctccatcttctttcttcagctccttaatcccttcttctccAATCTCTGTTACTGCTTC 145
|||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||
Sbjct 61 TCCTCCATCTTCTTCCTTCAGCTCCTTAATTCCTTCTTCTCCACTCTCTGTTACTTCTTC 120
Query 146 AACGATTCGAGCCTCCACAAAATTTAGCTCCATACGCGTCCGTTTCAGTCGAAGATCAAT 205
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct 121 AACGATTCGAGCCTCCACAAGATTTAGCTCCATACGCGTCCGTTTCAGTCGACGATCGAT 180
Query 206 CGTCAGATACAACGACCACGCCGGAGAAGACGAAGAGGATAGTGACGAGGATAAGGAAGA 265
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CGTCAGATACAATGACCACGCCGGAGAAGACGAAGAAGATAGTGACGAGGATAAGGAAGA 240
Query 266 ATATTGGAGCTTTGAGGAAGCAGTGACTCTCTTCAACAAGAGGGATTATTACAAAAGTCA 325
| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 241 AGATTGGAGTTTTGAGGAAGCAGTAACTCTCTTCAACAAGAGAGATTATTACAAAAGTCA 300
Query 326 TGACGCGCTTGAAGCTCTTTGGATTCAAGCAGAGGAACCAACTCGTACCTTAATCCATGG 385
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 301 CGACGCGCTTGAAGCTCTTTGGATTCAAGCTGAAGAACCAACTCGTACCTTAATCCATGG 360
Query 386 AATTCTTCAATGTGCTGTTGGATTTCACCATCTATTCAACAACAACCATAAAGGAGCGAT 445
||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 361 AATTCTTCAATGTGCCGTTGGATTTCACCATCTCTTCAACAGCAACCATAAAGGAGCGAT 420
Query 446 GATGGAGTTAGGAGAAGGAGTATGTAAGCTAAGGAAGATGAATTTCGAAGACGGACCGTT 505
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 GATGGAGTTAGGAGAAGGAGTATGTAAGCTAAGGAAGATGAATTTCGAAGGTGGACCGTT 480
Query 506 TCATGAATTCGAGCGAGATGTCTCCGCAGTTCTTGAATTCGTTTATCAAACTCAGCTTGA 565
||| |||||||| |||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 481 TCACGAATTCGAACGAGATGTTTCGGCCGTTCTTGAATTCGTTTATCAAACTCAGCTCGA 540
Query 566 ACTTGCTGCCTGTTCAGAAGATATGTGTTTGACGATGGATCAATCAGACAGATCGTATCA 625
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTCGCTGCTTGTTCAGAAGATATGTGTTTGACGATGGATCAATCAGACAGATCGTATCA 600
Query 626 ACTCTTAGGTGGTTATGCAGCTGGAGAGAGTATTTACAGCTTAGAGACTGTGCTTGACTT 685
|||||| |||||||||||||| ||| ||||||| ||||||||||||||| || |||||||
Sbjct 601 ACTCTTGGGTGGTTATGCAGCGGGACAGAGTATATACAGCTTAGAGACTCTGGTTGACTT 660
Query 686 CAACAATGGAATGTCTGAGACAACTTCTATACTCTTCTCTCCTTT-ACATTCATCGTCTG 744
|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 661 CAACAATGGAATGTCTGAGAAAACTTCTATACTCTTCTCTCCTTTGAG-TTCATCGTCTG 719
Query 745 AGCCAACTCGGGTTAAGCTCCCTACCCTTA-CCGCAACCGATAAGCATCTTCTTGCTTCT 803
||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 720 AGCCAACACGGGTTAAGCTCCCTACC-TTAACCGCAACCGATAAGCATCTTCTTGCTTTT 778
Query 804 ACATACGACGACAGATTCTAAAGAGAATGATCAA-TACGAAGATAATAGAAGAAGATCTC 862
||||||||| | ||||||| |||||||||||||| || ||||||||||||||| ||||
Sbjct 779 ACATACGACCAGAGATTCTGAAGAGAATGATCAAATAAGAAGATAATAGAAGA---TCTC 835
Query 863 ATTACTGTTATATTTCAAGAATCAGGTTCTGAACCTGTCAATAACATGAACAATGAGTCA 922
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 836 ATTACTGTTATATTTCAAGAATCAGGTTCTGAACCTATCAATAACATGAACAATGAGTCA 895
Query 923 TTTAGACAA-AAGGTAAAAACACATAACATTCCTGTCTTTTTAACCAGCAAAAACCAGCC 981
||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 896 TTTAGACAAGAAG-TAAAAACACATAACACCCCTGTCTTTTTAACCACCAAAAACCAGCC 954
Query 982 ATGAATGAAATTTTAG 997
||||||||||||||||
Sbjct 955 ATGAATGAAATTTTAG 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37284212826
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5