BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41160.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321802 jgi|Araly1|321802|fgenesh1_pm.C_scaffold_4001859 1393 0.0
Ahg938635 jgi|Araly1|938635|scaffold_502826.1 760 0.0
> Ahg321802 jgi|Araly1|321802|fgenesh1_pm.C_scaffold_4001859
Length=861
Score = 1393 bits (754), Expect = 0.0
Identities = 828/864 (96%), Gaps = 3/864 (0%)
Strand=Plus/Plus
Query 194 ATGAACGGAGGTCCTTCCGGTTTCAATAATGCTCCGGTCACGAAAGCCTTCGTCATCGCG 253
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACGGAGGTCCTTCCGGTTTCCATAATGCTCCGGTCACGAAAGCCTTCGTCATCGCG 60
Query 254 ACTGCTCTTTTCACTGTGTTCTTCGGGATCCGGGGAGGTTCTTCCAAGCTCGGCTTATCT 313
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 ACTGCTCTTTTCACTGTGTTCTTCGGGATCCGGGGAGGTTCTTCCAAGCTCGGTTTGTCT 120
Query 314 TACCAGGATATTTTTGAGAAGTTTCGGATTTGGAAGTTAATTATATCGGCTTTTGCCTTC 373
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TACCAGGATATCTTTGAGAAGTTTCGGATTTGGAAGTTAATTATATCGGCTTTTGCGTTC 180
Query 374 TCGTCCACAACTCAATTGCTTTCTGGCTTATATTTGCTATACTTCTTCCGAGTCTTTGAG 433
||||||||||| ||||| |||||||||| ||| |||| |||||||||||||||||||||
Sbjct 181 TCGTCCACAACAGAATTGTTTTCTGGCTTGTATCTGCTCTACTTCTTCCGAGTCTTTGAG 240
Query 434 AGACAGATTGGTTCAAATAAGTATTCGGTTTTCATCTTCTTCTCTGGATTTGTATCACTA 493
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AGACAGATTGGTTCAAATAAGTATTCGGTTTTCATCTTGTTCTCTGGATTTGTATCACTA 300
Query 494 ATACTAGAGACCATTTTGTTATCATTGACTAAAGATCCTACTGCAAACCTACTGACATCT 553
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 301 ATACTAGAGACCATTTTGTTATCACTGACTAAAGATCCTACTGCAAACCTCCTGACATCT 360
Query 554 GGACCATACGCCCTCGTATTCGCTTCTTTTGTACCCTTCTTCTTGGATATTCCAGTTACA 613
|||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 361 GGACCATACGCCCTTGTATTTGCTTCGTTTGTACCCTTCTTCTTGGACATTCCAGTTACA 420
Query 614 AAGAGGTTTGGTGTATTGGGCGTCCACTTCTCTGATAAATCATTCATATACCTTGCAGGT 673
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 AAGAGGTTTGGTGTATTGGGCGTCCACTTCTCTGATAAATCATTCATATATCTTGCAGGT 480
Query 674 GTCCAGCTTTTACTATCATCATGGAAAAGGTCCATCTTTACTGGAATTTGCGGTATAATT 733
|||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||
Sbjct 481 GTCCAGCTTTTACTATCATCTTGGAAAAGATCCATATTTACTGGAATTTGTGGCATAATT 540
Query 734 GCTGGTTCCTTGTATCGGTTGAACATCTTTGGTATTCGCAAGGCAAAGTTCCCGGAGTTC 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTGGTTCCTTGTATCGGTTGAACATCTTTGGTATTCGCAAGGCAAAGTTCCCGGAGTTC 600
Query 794 ATGGCTTCGTTATTCTCCCGGTTTTCCTTACCCTCCTTGAGCAGCCATTCTCAACCACCA 853
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGGCTTCGTTATTCTCCCGGTTTTCCTTACCCTCCTTGAGCAGCCATTCTCAACCACCA 660
Query 854 AGAAGGACATCACCCAACTTAGGTCGCCAAGCAGTGAGAGCTTATCGAGCTCCAATGCCG 913
|||||||| ||||| ||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 661 AGAAGGACCTCACCTAACTTAGGTCGTCAAGCA---AGAGCTTATCGAGCCCCAATGCCG 717
Query 914 TCAACTACAGAGCCATCAGAGGAAGCCATAGCTACTTTGGTATCTATGGGATTTGACCAG 973
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCAACTACAGAGCCATCTGAGGAAGCCATAGCTACTTTGGTATCTATGGGATTTGACCAG 777
Query 974 AATGCAGCGAGACAGGCGCTTGTACACGCCAGAAATGATGTCAACGCTGCCACCAACATC 1033
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 778 AACGCAGCGAGACAGGCGCTTGTACACGCCAGAAATGATATCAACGCTGCCACCAATATC 837
Query 1034 CTTCTTGAAGCACACTCTCACTAA 1057
||||||||||||||||||||||||
Sbjct 838 CTTCTTGAAGCACACTCTCACTAA 861
> Ahg938635 jgi|Araly1|938635|scaffold_502826.1
Length=923
Score = 760 bits (411), Expect = 0.0
Identities = 750/910 (82%), Gaps = 38/910 (4%)
Strand=Plus/Plus
Query 176 TCTGTTCATCCGATTAAGATGAACGGAGGTCCTTCCGGTTTCAATAATGCTCCGGTCACG 235
|||||||| |||| ||||||||||| ||||| ||||||||| ||||||||||||| ||
Sbjct 4 TCTGTTCACCCGACGAAGATGAACGGCGGTCCCTCCGGTTTCCATAATGCTCCGGTAACC 63
Query 236 AAAGCCTTCGTCATCGCGA-CTGCTCTTTTCACTGTGTTCTTCGGGATCCGGGGAGGTTC 294
||||||||||| ||| ||| | || ||||||||||| ||||||||||||| || ||||
Sbjct 64 AAAGCCTTCGTTATCACGAGC-GCCCTTTTCACTGTCTTCTTCGGGATCCAAGGTCGTTC 122
Query 295 TTCCAAGCTCGGCTTATCTTACCAGGATATTTTTGAGAAGTTTCGGATTTGGAAGTTAAT 354
||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 123 TTCTAAGCTCGGGTTGTCTTACCAGGATATTTTTGAGAAGTTTCGGATATGGAAGTTAAT 182
Query 355 TATATCGGCTTTTGCCTTCTCGTCCACAACTCAATTGCT-TTCTGGCTTATATTTGCTAT 413
|| ||| ||||||||||||| |||||| | ||||| | ||| || || |||||| |||
Sbjct 183 CATGTCGACTTTTGCCTTCTCCTCCACACCAGAATTGATGTTC-GGATTGTATTTGTTAT 241
Query 414 ACTTCTTCCGAGTCTTTGAGAGACAGATTGGTTCAAATAAGTA-TTCGGTTTTCATCTTC 472
||| ||||||||| ||||||||||||||||| ||||||||||| || |||||| |||||
Sbjct 242 ACTACTTCCGAGTTTTTGAGAGACAGATTGGCTCAAATAAGTACTT-GGTTTTTATCTTG 300
Query 473 TTCTCTGG-ATTTGTATCACTAATACTAGAGACCATTTTGTTATCATTGACT-AAAGAT- 529
||||| || | | ||||| ||| |||| ||| ||||||||||||| || || ||||||
Sbjct 301 TTCTCAGGGACT-GTATCTCTATTACTCGAGGTCATTTTGTTATCACTG-CTTAAAGATA 358
Query 530 CCTACTGCAAACCTACTGACATCTGGACCATACGCCCTCG-TATTCGCTTCTTTTGTACC 588
|| || |||||| |||| || ||||||||||||| ||| | |||| ||||| ||| ||||
Sbjct 359 CC-ACAGCAAACTTACTAACCTCTGGACCATACGGCCT-GATATTTGCTTCGTTTATACC 416
Query 589 CTTCTTCTTGGATATTCCAGTTACAAAGAGGTTTGGTGTATTGGGCGTCCACTTCTCTGA 648
||||| |||||| ||||| ||| ||| ||||||| | ||||| || ||| ||||||||||
Sbjct 417 CTTCTACTTGGACATTCCTGTTTCAACGAGGTTTCGCGTATTTGGTGTCAACTTCTCTGA 476
Query 649 TAAATCATTCATATACCTTGCAGGTGTCCAGCTTTTACTATCATCATGGAAAAGGTCCAT 708
||| ||||||||||| || ||||| || |||||| ||||||| || |||||||| |||||
Sbjct 477 TAAGTCATTCATATATCTCGCAGGAGTTCAGCTTCTACTATCTTCTTGGAAAAGATCCAT 536
Query 709 CTTTACTGGAATTTGCGGTATAATTGCTGGTTCCTTGTATCGGTTGAACATCTTTGGTAT 768
|||| ||||||||||||| |||||||| |||||||||||||| ||||||||| |||| ||
Sbjct 537 CTTTCCTGGAATTTGCGGCATAATTGCCGGTTCCTTGTATCGTTTGAACATCCTTGGCAT 596
Query 769 TCGCAAGGCAAAGTTCCCGGAGTTCATGGCTTCGTTATTCTCCCGGTTTTCCTTACCCTC 828
||||||||||||||||| ||||| ||||||| || || || ||| |||| || |||||
Sbjct 597 CCGCAAGGCAAAGTTCCCCGAGTTTGTGGCTTCATTCTTTTCGCGGCTTTCTTTTCCCTC 656
Query 829 CTT-GAGCAGC-CAT--TC-TCAACCACCAAG-A-A------G--G--AC-AT--CACCC 868
|| | | | | | | || || | ||||||| | | | | || || ||||
Sbjct 657 TTTCG-GTAACTC-TCCTCCTCCAGCACCAAGCAGAAACATCGTTGGGACTATATCACCT 714
Query 869 AACTTAGGTCGCCAAGCAGTGAGAGCTTATCGAGCTCCAATGCCGTCAACTACAGAGCCA 928
||| ||| || | ||||| |||| || | | ||||||| ||||||||| | ||||||
Sbjct 715 AACACAGGGCGTCGAGCAGAGAGATCTCAGCCAGCTCCAGTGCCGTCAAGTGTGGAGCCA 774
Query 929 TCAGAGGAAGCCATAGCTACTTTGGTATCTATGGGATTTGACCAGAAT-GCAGCGAGACA 987
|| |||||||||||| |||| |||||||| |||||||| ||| |||| |||||||||||
Sbjct 775 TCTGAGGAAGCCATAACTACATTGGTATCAATGGGATTCGAC-AGAAACGCAGCGAGACA 833
Query 988 GGCGCTTGTACACGCCAGAAATGATGTCAACGCTGCCACCAACATCCTTCTTGAAGCACA 1047
||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 834 GGCACTTGTCCACGCCAGAAATGATGTCAACGCCGCCACAAACATCCTTCTCGAAGCACA 893
Query 1048 CTCTCACTAA 1057
|| ||||||
Sbjct 894 ATCCCACTAA 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5