BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41170.1
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321803 jgi|Araly1|321803|fgenesh1_pm.C_scaffold_4001860 1581 0.0
> Ahg321803 jgi|Araly1|321803|fgenesh1_pm.C_scaffold_4001860
Length=1113
Score = 1581 bits (856), Expect = 0.0
Identities = 1038/1124 (92%), Gaps = 19/1124 (2%)
Strand=Plus/Plus
Query 292 ATGGAGAAACAGTACCTCACTTTCATTTCTTTTTGTTTCTCCATCACCATTTGTGGGTTC 351
|||||||||||||| ||||||||| |||| ||||||||||||| ||| ||||||||| |
Sbjct 1 ATGGAGAAACAGTATCTCACTTTCCTTTCGTTTTGTTTCTCCAACACAATTTGTGGGCTA 60
Query 352 CTCATAGTTTCTTGGCTGGCAAGAAGCATAATCCGTAATGGG---ATTAGAACATTAACA 408
||||||||||||||||| ||||||||||||||||| |||||| || ||||||||| ||
Sbjct 61 CTCATAGTTTCTTGGCTTGCAAGAAGCATAATCCGAAATGGGTTAATAAGAACATTAGCA 120
Query 409 TGGagaaaggaaacgaagaggaagaaaaagaatcaagaagatgaaaacaaaaTGTCTCTC 468
|||||||| |||| | || |||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TGGAGAAAAGAAA-G--GAAGAAGAAGAAGAATCAAGAAGATGAAAACAAAATGTCTCTC 177
Query 469 CTGGATTTGCCGGACTTAACCTTAGACTGCATATTAGAGAAGCTCTCACCATCAGAGCTC 528
||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct 178 CTGGATTTGCCTGACTTAACCTTAGACTGCATCTTAGAAAAGCTCTCCCCATCTGAGCTA 237
Query 529 TGTGCAATGACTAGTGTTTGCTCCGAGCTAAGAGATAAGTGTGTAAGCGATCATCTATGG 588
|||||||||||| |||||||||| ||||| || || || ||||| ||||| |||||||||
Sbjct 238 TGTGCAATGACTTGTGTTTGCTCTGAGCTGAGGGACAAATGTGTGAGCGACCATCTATGG 297
Query 589 GAGAAGCATATGGAGACA-AAATGGGGAAGATTGATGGGTGATGCAGCGATTCAAGAGTG 647
|||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||
Sbjct 298 GAGAAGCATATGGAGA-AGAAATGGGGAAGATTGATGGGTGACGCAGCGACACAAGAGTG 356
Query 648 GAAATCTCACGTTGCTACGATAATGAGATGTCTCACAagtagtagtagtagtagtagAAA 707
||||||||||||||||||||||||||||||||||| |||| | |||| ||||| | ||
Sbjct 357 GAAATCTCACGTTGCTACGATAATGAGATGTCTCAGAAGT--T-GTAGCAGTAG--G-AA 410
Query 708 GAGTAAACCAAACTGGAGTTCGAGGTTTGTTGCGAAT-TTGAAACCCTTTGCATGGTTAA 766
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 411 GAGTAAACCAAACTGGAGTTCGAGGTTTGTTGCGAGTCTT-AAACCCTTTGCATGGTTAA 469
Query 767 GTTCAAACCATGGTTGTGAAAACAGAGGATCATCAT---CATATTTGGCACCTATAGATT 823
| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 470 GCTCAAACCATGGTTGTGAAAACAGAGGATCATCATCAACATATTTGGCACCTATTGATT 529
Query 824 CTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCT 589
Query 884 ACAATCGCGAGAACGGACATGTTGGATTCATGATGTCTTGTTACGATGCTAAGATCAGAT 943
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 590 ACAATCGTGAGAACGGACATGTTGGATTCATGATGTCTTGTTACGATGCTAAAATCAGAT 649
Query 944 ACGATTTCAAGACTGATACATTTCAAGCTAGATACTCGGCACATGGCCGGCGAGCGGCGG 1003
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 650 ACGATTTCAAGACTGATACATTTCAAGCTAGATACTCGGCGCATGGCCGGCGAGCGGCGG 709
Query 1004 AGGAAAAGGTGACGTGGCAGAGGCTGAGACCGTCTCAAGACGACACAAAGTCACGTGATC 1063
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 710 AGGAAAAGGTGAGGTGGCAGAGGCTGAGACCGTCCCAAGACGACACAAAGTCACGTGATC 769
Query 1064 TGCACGTGTCAGATTGTTTGCACGGACTTCGACCTGGTGACCATTTCGAGATCCAATGGC 1123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TACACGTGTCAGATTGTTTGCACGGACTTCGACCTGGTGACCATTTCGAGATCCAATGGC 829
Query 1124 GACGAACCAAAGAGTTCCCTTATGGTTGGTGGTTCGGAATCGTTGGTCATCTACAAAACT 1183
|| |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 830 GAAGAACCAAAGAATTCCCTTATGGTTGGTGGTTCGGAATCGTGGGTCATCTGCAAAACT 889
Query 1184 GCGACGGCGTACAAAATTGTCGTTGCGACTCTGACGAGAATGTGGTGATGGAGTTCAGAC 1243
||||||||| | | ||||| |||||| ||||||| ||||||||||||||||| |||||||
Sbjct 890 GCGACGGCGGAGAGAATTGCCGTTGCCACTCTGATGAGAATGTGGTGATGGAATTCAGAC 949
Query 1244 AATTCAGACCGGAATCACCGTGGAGAAGAACGGTGATAAAGAGGAAAGACCACCGTGAGA 1303
|||| |||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 950 AATTTAGACAGGAGTCACCGTGGAGAAGGACGGTGATAAACAGGAAGGAACACCGTGAGA 1009
Query 1304 CGGGAAATGAAGAAAACGGTTTCTACGGCGGAGTAAAGAAATTGGGTACGGAGGAAGAGA 1363
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1010 CGGGAGATGAAGAAAACGGCTTCTACGGCGGGGTAAAGAAATTGGGTACGGAGCAAGAGA 1069
Query 1364 TTTCTACGTGGAAGCAATTGTGGCCATCACAAGCCTTGGAGTAG 1407
||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 1070 TTTCTACATGGAAGCGATTGTGGCCATCACAAGCCTTGGAATAG 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5