BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41190.1 Length=2155 Score E Sequences producing significant alignments: (Bits) Value Ahg934938 jgi|Araly1|934938|scaffold_402926.1 2710 0.0 > Ahg934938 jgi|Araly1|934938|scaffold_402926.1 Length=1647 Score = 2710 bits (1467), Expect = 0.0 Identities = 1592/1652 (96%), Gaps = 9/1652 (1%) Strand=Plus/Plus Query 242 TTACTTGGGTTTGTTC-GAAATATGGAGGACAAGAACAATGATAAGGAGaaaaaaaCCGA 300 ||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||| |||| Sbjct 1 TTAGTTGGCTTTGTTCGGAAAAATGGAGGACAAGAACAATGATAAGGAGAAAAAACCCGA 60 Query 301 CGTTACGTTCGAAGATGACGAAGATAACGAAGATCTAGAAGACAACAGCAGTAAGTACGA 360 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 CTTTACGTTCGAAGATGACGAAGATAACGAAGATCTAGAAGAGAACAGCAGTAAGTACGA 120 Query 361 GAACGACAGTGAAACTGATCAAAGCGATCTCGGAGATCTTCCTGGTGATGCTGTTGATCG 420 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 121 GAACGACAGTGAAACTGATCAAAGCGATCTCGGAGATCTTCCTGGTGATGC---TGATGG 177 Query 421 TGACGACGACATCGATGAACCTTTCATTTCCCAGGTTCAATGGCCTCAAAGCTTCAGGGA 480 || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 178 TGGCGACGACAACGATGAACCTTTCATTTCCCAGGTTCAATGGCCTCAAAGCTTTAGGGA 237 Query 481 AACGACTGATTCTTATACGATTGCGGCATCACCAATCTTCGGGTCGCTCAGGAGTAATCC 540 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 238 AACGACTGATTCTTATACGATTGCTGCATCACCAATCTTCGGGTCGCTCAGGAGTAA--- 294 Query 541 TCCGAGTTTCTATAGAGCCAGCAGAAGTAATTTAGATGTTGAGTCAAAAGCACCTTTGCT 600 |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| Sbjct 295 TCCGAGTTTCTATAGAGCGAGCAGAAGTAATTTAGATGTTGAGTCTAAAGCCCCTTTGCT 354 Query 601 TCCTGAGAGGCATGATGATTCAGACAAAGCCTCAGCTACACAATCTGCTTGGTCTCATAA 660 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 355 TCCTGAGAGGCATGAAGATTCAGACAAAGCCTCAGCTACACAATCAGCTTGGTCTCATAA 414 Query 661 AGGCTCATTTGCTGAGGAATTGCCCATTGGTGGCTATGGATGCAGCGTCATTCAAACCAT 720 ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 415 AGGCTCATTTGCTGACGAATTGCCTATTGGTGGCTATGGATGCAGCGTCACTCAAACCAT 474 Query 721 TTTCAATGCTATTAATGTAATGGCTGGAGTTGGACTTCTCTCAACACCTTATACAGTGAA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 TTTCAATGCTATTAATGTAATGGCTGGAGTTGGACTTCTCTCAACACCTTATACAGTGAA 534 Query 781 AGAAGCTGGTTGGGCAAGTATGGTAATTCTTCTCTTATTTGCTGTTATTTGTTGTTACAC 840 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 535 AGAAGCTGGTTGGGCAAGTATGGTGATTCTTCTCTTATTTGCTGTTATTTGTTGTTACAC 594 Query 841 TGCTACTTTAATGAAAGACTGTTTCGAGAACAAGACCGGCATTATCACTTATCCTGATAT 900 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 595 TGCTACTTTAATGAAAGACTGTTTCGAGAACAAGACCGGTATTATCACTTATCCTGATAT 654 Query 901 TGGAGAAGCAGCTTTTGGCAAATATGGTCGTATTCTTATCTGTATGCTATTGTACACAGA 960 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 655 TGGAGAAGCAGCTTTTGGGAAATATGGTCGTATTCTCATCTGTATGCTATTGTACACAGA 714 Query 961 ACTATATTCATATTGTGTTGAATTCATCATTTTGGAAGGAGATAACCTTACCGGGCTTTT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 ACTATATTCATATTGTGTTGAATTCATCATTTTGGAAGGAGATAACCTTACCGGGCTTTT 774 Query 1021 CCCTGGTACATCCTTGGATTTGCTCGGGTTCCGACTTGACTCTAAGCATTTATTTGGAAT 1080 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 775 CCCTGGTACATCCTTGGATTTGCTCGGGTTCCGACTTGACTCTAAACATTTATTTGGAAT 834 Query 1081 CTTAACTGCTCTCATTGTTCTTCCAACTGTTTGGTTGAAAGATCTACGCATCATTTCCTA 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 CTTAACTGCTCTCATTGTTCTTCCAACTGTTTGGTTGAAAGATCTACGCATCATTTCCTA 894 Query 1141 CCTCTCAGCCGGTGGAGTTATCGCAACCGCTTTGATAGCAGTAAGCGTGTTTTTCCTCGG 1200 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 895 CCTCTCAGCCGGTGGAGTTATTGCAACCGGTTTGATAGCAGTAAGCGTGTTTTTCCTCGG 954 Query 1201 TACAACGGGCGGGATTGGGTTTCATCACACCGGGCAGGCTGTGAAATGGAACGGGATACC 1260 |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 955 CACAACGGGTGGGATTGGGTTTCATCACACCGGGCAGGCTGTGAAATGGAATGGTATACC 1014 Query 1261 GTTTGCAATTGGTATATACGGGTTTTGCTATTCAGGACATTCAGTGTTCCCAAATATATA 1320 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 ATTTGCAATTGGTATATACGGGTTTTGCTATTCAGGACATTCAGTGTTCCCAAATATATA 1074 Query 1321 CCAATCCATGGCTGATAAAACCAAATTCAACAAAGCAGTGATCACTTGTTTCATTATATG 1380 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1075 CCAATCCATGGCTGATAAAACCAAATTCAACAAAGCAGTGATCACATGTTTCATTTTATG 1134 Query 1381 TGTTTTGTTATACGGAGGAGTTGCAATCATGGGTTATCTCATGTTTGGAGAAGCTACCTT 1440 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1135 TGTTTTGTTATACGGAGGAGTTGCAATCATGGGTTATCTCATGTTTGGTGAAGCTACCTT 1194 Query 1441 GTCTCAGATTACACTAAACATGCCACAGGACCAATTTTTCTCAAAAGTGGCACAGTGGAC 1500 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1195 GTCTCAGATTACACTAAACATGCCACAGAACCAATTTTTCTCAAAAGTGGCACAGTGGAC 1254 Query 1501 AACGGTTGTGAGTCCGTTTACAAAATACGCTCTCCTGATGAATCCACTTGCAAGGAGTAT 1560 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1255 AACGGTTGTGAATCCGTTTACAAAATACGCTCTCCTGATGAATCCACTTGCCAGGAGTAT 1314 Query 1561 AGAAGAACTATTACCGGAAAGAATGTCAGAGAACATATGGTGCTTTCTTCTTCTAAGAAC 1620 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 AGAAGAACTATTACCTGAAAGAATGTCAGAGAACATATGGTGCTTTCTTCTTCTAAGAAC 1374 Query 1621 AGCACTCGTCGCTTCTTCTGTTTGTTCTGCTTTCCTTATTCCATTTTTTGGTCTTATGAT 1680 || |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1375 AGGACTCGTCGCTTCCTCTGTTTGTTCTGCTTTCCTTATCCCATTTTTTGGTCTTATGAT 1434 Query 1681 GGCTCTTATAGGATCTCTTCTCAGTATACTAGTGGCAATAATAATGCCAGCTTTATGCTT 1740 |||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| Sbjct 1435 GGCTCTTATAGGATCTCTTCTCAGTATACTCGTGGCAATAGTAATGCCAGCTCTATGCTT 1494 Query 1741 CATAAAGATAATGGGGAACAAAGCAACAAGAACACAGATGATTCTGAGTTCGATCA-TTG 1799 |||||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| Sbjct 1495 CATAAAGATAATGGGGAACAAAGCTACTAGAACACAGATGATTCTGAGTTCGA-CAATTG 1553 Query 1800 TGGCCATCGGGGTGGTAAGCGGGACCTTGGGGACATATTCTTCGGTGGCAAAGATCATTA 1859 ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1554 TGGCCATCGGGTTGGTAAGCGGAACCTTGGGGACATATTCTTCGGTTGCAAAGATCATTA 1613 Query 1860 GGAACTATCAGTGAAGGAACTCCATGACAAAG 1891 |||||||||| ||||| ||||||||||||||| Sbjct 1614 GGAACTATCAATGAAGAAACTCCATGACAAAG 1645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81094131605 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5