BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41200.1 Length=720 Score E Sequences producing significant alignments: (Bits) Value Ahg483189 jgi|Araly1|483189|fgenesh2_kg.4__2249__AT2G41200.1 1088 0.0 > Ahg483189 jgi|Araly1|483189|fgenesh2_kg.4__2249__AT2G41200.1 Length=704 Score = 1088 bits (589), Expect = 0.0 Identities = 671/709 (95%), Gaps = 12/709 (2%) Strand=Plus/Plus Query 2 aaaaaaaCAAGAAGAAGGAAGTTATCACAATATGGGTCAAGCTCTCAATACCGCAAAAGG 61 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAAAAGAAGAAGAAGGAAGTTATCACAATATGGGTCAAGCTCTCAATACCGCAAAAGG 60 Query 62 TAAAGGAGAGGTAGACGCG-AAAGACTTGGAAGCTATGGCTGAAAATTGCTACCGCAAAC 120 |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| Sbjct 61 GAAAGGAGAGGTAGACG-GAAAAGACTTGGAAGCTATGGTTGAAAATTGCTACCGCAAAC 119 Query 121 GCTTAGAAGaaaaaaaTGACGATCAAGAATGGTCCTTT-GGCGACTTCTACCGCATTGTG 179 ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 120 GCTTAGAAGAACAAAATGACGATCAAGAATGGT-CTTTCGGCGACTTCTACCGCATTGTG 178 Query 180 GCTGAAGCAGTCGAGGAAATTAACAGAAGACTCGGTGGCACTCAACTTAAGGTGCCAAGT 239 |||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||| Sbjct 179 GCTGAAGCTGTCGAGGAAATTAATAGAAGACTCGGTGGTACACAACTTAAGGTGCCAAGT 238 Query 240 GTTGAGAAACTACAACAAGCTTATGAGATACACAATCTCGGGCAGGGGAAGAAGCTATCG 299 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 239 GTTGAGAAACTACAACAAGCTTATGAGATACACAATCTCGGGGAGGGGAAGAAGCTATCG 298 Query 300 AAGGACGAGTTTCAGAAGCTTCTTCAAGAGGTTTTAATCGGAGTTGGGTTCACCGGCGTC 359 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 299 AAGGACGAGTTTCAGAAGCTTCTTCAAGAGGTTTTAATTGGAGCTGGGTTCACCGGCGTC 358 Query 360 GGAGGAGTAAAGGAATTTCTACTTTTCATCTTCGGAGTTCCTGCGATCGCCGTCTTCATT 419 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 359 GGAGGAGTAAAAGAGTTTCTACTATTCATCTTCGGAGTTCCTGCGATCGCCGTCTTCATT 418 Query 420 AAGAACCGTATAGCTCCGACGTCCGTTCCCAACGACTTGTTTATCCCCGCCATCACTTCC 479 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 419 AAGAACCGTATAGCTCCGACGTCCATTCCCAACGACTTGTTTATCCCCGCCATCACATCC 478 Query 480 GCCACCGTCTTCCTCCTCGCCAAGCTCAATAAGATATGAAGTCTCTACTAATTGTTTGAT 539 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 479 GCCACCGTCTTCCTCCTCGCCAAGCTCAATAAGATATGA---CTCTACTAATTGTTTGAT 535 Query 540 CCTTTCGAGCTTTGCTTTGTTTGCTAAATTTGTATTGGTGATTTGATTATATGTGTTTG- 598 |||||||||||||||||||||| || ||||| ||||||||||||||| |||||||| || Sbjct 536 CCTTTCGAGCTTTGCTTTGTTTTCTTAATTTATATTGGTGATTTGATAATATGTGTGTGG 595 Query 599 A-TACACGGAGAAGCTTAAAGTTTCACTCTTTGAGTTCATTTAC-TAGATTGATGAAAAG 656 | ||| ||| ||||||||||||||||||||||||||||| |||| | ||||||||||||| Sbjct 596 AATACTCGGTGAAGCTTAAAGTTTCACTCTTTGAGTTCACTTACGT-GATTGATGAAAAG 654 Query 657 Gaaaaaaaaa-TGAACTTATGTTGTTCGACAGAATGCCTCAACGAGTTT 704 |||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 655 GAAAAAAAAAATGAACTTATGTTGTTCGACAGAATGCCTCAGTGAGTTT 703 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26495427315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5