BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41250.1 Length=1143 Score E Sequences producing significant alignments: (Bits) Value Ahg934945 jgi|Araly1|934945|scaffold_402933.1 1365 0.0 > Ahg934945 jgi|Araly1|934945|scaffold_402933.1 Length=904 Score = 1365 bits (739), Expect = 0.0 Identities = 865/922 (94%), Gaps = 23/922 (2%) Strand=Plus/Plus Query 47 TCAATCATACAGA-AGCAGCTAATGGCGTTG---AGAATCAGGAAGGCGACGACGACACT 102 |||||| ||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 1 TCAATC--ACAGAGAGAAGCTAATGGCGTTGTTAAGAATCAGGAAGGCGACGACGACACT 58 Query 103 TCTCT-TCTCCGGTGGGATTACTCATGGAACGGATCGGATCGCGAGAACCGGAGCATTGC 161 ||||| | |||||| | || ||||||||||||||||||||||||||||||| Sbjct 59 TCTCTAT-TCCGGT--G---------GG-ACGGATCGGATCGCGAGAACCGGAGCATTGC 105 Query 162 TCAGCCGTTGGATCTCCTCTGCTTCGTCATCTTCCGCTGTTGTAGCGGATGATGAATCTA 221 | ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct 106 TGAGCCGTTGGATCTCCTCCGCTTCGTCATCTTCCGCTGTTGTGGCGGAGGATGAATCTG 165 Query 222 GTGGGATTTACGGATTGGGAAGTGTGTTGAAAGAGTATGAAGATTATAGGAGATCTCTCT 281 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 166 GTGGGATTTACGGATTGGGAAGTGTATTGAAGGAGTATGAAGATTATAGGAGATCTCTCT 225 Query 282 ATGGTGAGATCACTCATAAGGCTTTGCTTGTTGATGCTGTTGGTACTCTCCTTGTTCCCG 341 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 226 ACGGTGAGATCACTCATAAGGCGTTGCTTGTTGATGCTGTTGGTACTCTCCTTGTTCCCG 285 Query 342 CTCAACCTACTGCTCAGATATATAAGAATATTGGAGAGAAGTACGGAGTGGAGTACTCGG 401 |||||||||| ||||||||||| ||||||||||| ||||||||||| || |||||||||| Sbjct 286 CTCAACCTACGGCTCAGATATACAAGAATATTGGTGAGAAGTACGGGGTCGAGTACTCGG 345 Query 402 AGGCTGAGATACTTACTAGATACAGAAGAGCTTATCAGAAACCATGGGGTGGATCTCATC 461 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 346 AGGCTGAGATACTTACTAGATACAGAAGAGCTTATCAGAAACCATGGGGCGGATCTCATC 405 Query 462 TTAGATATGTAAACGATGCAAGACCTTTCTGGCAGTATATAGTGACTGCATCAACAGGCT 521 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 406 TTAGATATGTCAACGATGCGAGACCTTTCTGGCAGTATATAGTGACTGCATCAACAGGCT 465 Query 522 GCTCGGATTCACAGTACTTTGAAGAGCTTTACAGCTATTTTACTACAGAACAGGCGTGGA 581 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 466 GCTCGGATTCTCAGTACTTTGAAGAGCTTTACAGTTATTTTACTACAGAACAGGCGTGGA 525 Query 582 AGTTATGTGATCCAGATGCAGGGAAAGTGTTTAAGGCTATTAAAGAAGCGGGTGTAAAAG 641 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 526 AGTTATGTGATCCAGATGCAGGGAGAGTGTTTAAGGCTATTAAAGAAGCGGGTGTGAAAG 585 Query 642 TTGCAATAGTCTCCAACTTCGATACTCGGTTAAGACCTCTCCTACGTGCATTGAGATGTG 701 ||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 586 TTGCAATTGTGTCCAACTTCGATACTCGGTTAAGACCACTCCTACGTGCACTGAGATGTG 645 Query 702 AAGATTGGTTTGATGCTGTAGCTGTTTCAGCAGAAGTTGAAGCGGAAAAACCAAACCCGA 761 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 646 AAGACTGGTTTGATGCTGTAGCTGTTTCAGCAGAAGTTGAAGCGGAGAAACCAAACCCGA 705 Query 762 CTATCTTCTTAAAAGCTTGTGAGTTATTAGAAGTGAATCCCGAGGATGCGGTTCATGTAG 821 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 706 CTATCTTCTTGAAAGCTTGTGAGTTATTAGAAGTGAATCCTGAGGATGCGGTTCATGTAG 765 Query 822 GAGATGACCGTAGGAATGATGTATGGGGAGCTAGAGACGCAGGCTGTGACGCTTGGCTCT 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 GAGATGACCGTAGGAATGATGTATGGGGAGCTAGAGACGCAGGCTGTGACGCTTGGCTCT 825 Query 882 GGGGAAGTGAAGTTACGTCATTTAAACAGGTTGCTCAACGGATAGGAGTGAAGGTCTGAA 941 |||||||||||||||| || || ||||||||||||||||||||||||||||||| ||||| Sbjct 826 GGGGAAGTGAAGTTACTTCGTTCAAACAGGTTGCTCAACGGATAGGAGTGAAGGGCTGAA 885 Query 942 GCAAAAGCATATGAGAGAAATG 963 ||||| |||| |||||||||| Sbjct 886 GCAAA-GCAT--GAGAGAAATG 904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42621421206 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5