BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41290.1 Length=1357 Score E Sequences producing significant alignments: (Bits) Value Ahg483200 jgi|Araly1|483200|fgenesh2_kg.4__2260__AT2G41290.1 1692 0.0 > Ahg483200 jgi|Araly1|483200|fgenesh2_kg.4__2260__AT2G41290.1 Length=1195 Score = 1692 bits (916), Expect = 0.0 Identities = 1109/1202 (92%), Gaps = 14/1202 (1%) Strand=Plus/Plus Query 39 aaaaaaaTCTGAACAAAATGATGAAACTCCTCTTGGTGGTGGCAACT-TCTGTTGCCCTT 97 ||||||||||||| ||||||||||||||||| ||||||||||||| | ||| |||||||| Sbjct 1 AAAAAAATCTGAAGAAAATGATGAAACTCCTTTTGGTGGTGGCAA-TATCTTTTGCCCTT 59 Query 98 ATCTTTAGCGTCACTGATTTATCCGGTGAGGGACCAAAACATGGAGGAGAATCCATGTTG 157 |||| ||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||| Sbjct 60 CTCTTAAGCCTCACTGATTTTTCCGGTGAGAGACCAAAACAT---GGAGATTCCATGTTG 116 Query 158 ACAGTCCAAATCCCTGATTTCCGTCTGATTCCTACCACCGGAGCTTTGGGACCGGAGAGT 217 ||||||||| ||||||||||||||||| |||| |||||||| |||||||||||||||||| Sbjct 117 ACAGTCCAATTCCCTGATTTCCGTCTGCTTCCGACCACCGGGGCTTTGGGACCGGAGAGT 176 Query 218 TTTGTCTTTGATTTTTTCGGCGATGGTCCTTACACCGGTTTATCTGACGGTCGAATTGTT 277 |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 177 TTTGTCTTCGATTTTTCCGGCGACGGTCCTTACACCGGTTTATCTGACGGTCGAATTGTT 236 Query 278 AAGTGGCTAGCTAATGAGAGCCGTTGGATCGATTTCGCCGTCACCACCTCCGCAAGAGAA 337 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 237 AAGTGGCTAGCTAATGACAGCCGTTGGATCGATTTCGCCGTCACCACCTCCACAAGAGAA 296 Query 338 GGTTGTGAGGGCCCGCACGAGCACCAACGAACAGAACACGTGTGTGGACGACCATTGGGC 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GGTTGTGAGGGCCCGCACGAGCACCAACGAACAGAACACGTGTGTGGACGACCATTGGGC 356 Query 398 CTTGCCTTTGACAAATCCACTGGTGACCTTTATATAGCCGATGCTTATATGGGCCTTCTT 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 CTTGCCTTTGACAAATCCACTGGTGACCTTTATATAGCCGATGCTTATATGGGCCTTCTT 416 Query 458 AAAGTTGGCCCAACAGGTGGTGTCGCCACTCAGGTGTTACCACGTGAGCTAAATGAGGCC 517 ||||||||||||||||||||||| |||| ||| | || ||||||||||| ||||||||| Sbjct 417 AAAGTTGGCCCAACAGGTGGTGTAGCCAATCAAATTTTGCCACGTGAGCTGAATGAGGCC 476 Query 518 CTTCGATTTACCAATTCTTTGGATATCAATCCACGGACCGGAGTTGTCTACTTTACCGAC 577 ||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||| Sbjct 477 CTTCGATTTACCAATTCATTGGATATCGATCCACAAACCGGAGTTATCTACTTTACCGAC 536 Query 578 AGTAGTTCGGTTTATCAACGGAGGAACTATATAGGGGCGATGATGAGTGGGGACAAAACT 637 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 537 AGTAGTTCGGTTTATCAACGGAGGAACTATATAGGGGCGATGATGAGTGGGGACAGAACC 596 Query 638 GGTAGACTGATGAAGTACGAC--AAC-ACGAAACAAGTGACCACTCTTCTAAGCAACTTA 694 ||||||||||||||||||||| || ||||||||||||||||||||| |||||||| || Sbjct 597 GGTAGACTGATGAAGTACGACCCAAATACGAAACAAGTGACCACTCTTTTAAGCAACCTA 656 Query 695 GCGTTTGTAAACGGTGTCGCTTTAAGCCAAAACGGTGATTACCTTCTCGTCGTCGAGACC 754 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 657 GCGTTCCCAAACGGTGTCGTTTTAAGCCAAAACGGTGATTACCTTCTCGTCGTCGAGACC 716 Query 755 GCCATGTGTCGTAT-CTTACGTTACTGGCTCAACGAAACGTCGGTAAAGTCTCAATCTCA 813 |||| |||||| | || ||||||||||| || || |||||| | || | |||||| Sbjct 717 GCCACGTGTCGGGTTCT-ACGTTACTGGCGCAGCGCCACGTCGACGACGTGTAAATCTCG 775 Query 814 CGATAACTACGAGATTTTCGCGGAGGGGCTCCCTGGGTTTCCAGACAACATAAAGAGAAG 873 ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 776 CGAGAACTACGAGATTTTCGCGGAGGGGCTCCCCGGGTTTCCCGACAACATAAAGAGGAG 835 Query 874 TCCACGTGGCGGATTCTGGGTAGGCTTGAACACAAAACACTCAAAGCTGACAAAGTTCGC 933 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 836 TCCACGTGGCGGATTCTGGGTAGGCTTGAACACGAAACACTCAAAGCTGACAAAGTTTGC 895 Query 934 CATGTCGAACGCGTGGCTTGGACGTGCCGCTTTGGGCCTGCCGGTGGATTGGATGAAGGT 993 |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 896 CATGTCCAACGCGTGGCTTGGACGCGCCGCTTTGGGCCTGCCGGTGGACTGGATGAAGGT 955 Query 994 CCATTCGGTTTGGGCCAGGTACAATGGGAACGGCATGGCCGTGAGGTTGAGCGAGGATAG 1053 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 956 CCATTCGGTTTGGGCCAAGTACAACGGGAACGGCATGGCCGTGAGGTTGAGCGAGGATAG 1015 Query 1054 TGGCGTTATATTAG-AGGTATTCGAAGGT-AAAAATGAAAATAAGTGGATATCTATAAGT 1111 |||||| || || | |||||||||| ||| ||||| |||| ||||||||||||||||||| Sbjct 1016 TGGCGTAAT-TTCGGAGGTATTCGAGGGTCAAAAAGGAAA-TAAGTGGATATCTATAAGT 1073 Query 1112 GAGGTTGAAGAAAAAGATGGAACTCTTTGGGTTGGATCGGTGAATACTCCTTTCGCTGGC 1171 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1074 GAGGTTGAAGAAAGAGATGGAACTCTTTGGGTTGGATCGGTAAATACTCCTTTCGCTGGC 1133 Query 1172 ATGTATAAAATCTAAAATTGAGTAATACAAATATGTTTTTCCAACAATATGATTCATATA 1231 ||||||||||||||||||||| ||||||| || || ||||||||| || ||||||| | Sbjct 1134 ATGTATAAAATCTAAAATTGATTAATACAGATGTGCTTTTCCAACCTTAAAATTCATAGA 1193 Query 1232 TA 1233 || Sbjct 1194 TA 1195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50779725444 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5