BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41360.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934962 jgi|Araly1|934962|scaffold_402950.1 1419 0.0
Ahg902101 jgi|Araly1|902101|Al_scaffold_0004_2751 270 2e-71
> Ahg934962 jgi|Araly1|934962|scaffold_402950.1
Length=1157
Score = 1419 bits (768), Expect = 0.0
Identities = 945/1029 (92%), Gaps = 18/1029 (2%)
Strand=Plus/Plus
Query 1 ATGGCTAGAAACGTATCGTCGTGGTCATCCCTTTCTTGTTTGCCCGACGAGATGGTTCTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCTAGAAACGTATCGTCGTGGTCATCCCTTTCTTGTTTGCCCGACGAGATGGTTCTG 80
Query 61 AACTGCCTAGCCCGCGTCCCGAGACGCTACTACGAAAACATCTCTTGCGTCTCC-GTAAG 119
|||||| ||| ||||||||||||||| |||||||||||| || |||||||||| | |||
Sbjct 81 AACTGCTTAGTCCGCGTCCCGAGACGGTACTACGAAAACGTCGCTTGCGTCTCGAG-AAG 139
Query 120 GCTCAGGTCCCTTGTGCGTACCCCTGAGCTCTACCGGATGCGATCCCTCCTCCACAAGGA 179
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 140 GCTCAGGTCCCTTGTGCGCACGCCTGAGCTCTACCGGATGCGATCCCTCCTCCACAAGGA 199
Query 180 TTCCATCTACGTCTGCTTCTGCGATAGGGAGAATTATTCGACTGATGCCACCTATCTTTG 239
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 200 TTCCGTCTACGTCTGCTTCTGCGATAGGGAGAATTATTCTACTGATGCCACCTATCTTTG 259
Query 240 GTTCACTCTCCGTCCCACGACAGCGACGATGGAGTATCAATTGGTCCCGCTCTCGTTCCC 299
||||||||||||||| |||| | ||| | || |||||||||||||||| ||||||||||
Sbjct 260 GTTCACTCTCCGTCCAACGA--G-GACAACGGGGTATCAATTGGTCCCGATCTCGTTCCC 316
Query 300 TAGTCATAATTTCATGTTCCGAGCTTCCACCGTCGCGGTGGATTCAGAGATATACTTTGT 359
|| |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 317 TATTCATTGTTTCATGTTCCGATCTTCCACGGTCGCGGTGGATTCAGAGATATACTTTGT 376
Query 360 GGGCGGACGTCCAAACCCGACCGAGTTGTGGATCCTTGATACCCGGTCTGGCAAGTTACG 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 377 GGGCGGACGTCCAAACCCGACCGAGCTGTGGATCCTTGATACCCGGTCTGGCAAGTTACG 436
Query 420 TCAGGGCCCGATCAAGCCGGAGTTCCTACGAATTGCGTCTAGCAGCGCCGTGGGAGTATT 479
||||||||||||||||||||||| || |||||||||||| |||| |||||||||||||||
Sbjct 437 TCAGGGCCCGATCAAGCCGGAGTCCCGACGAATTGCGTCCAGCAACGCCGTGGGAGTATT 496
Query 480 CGACGGAAAGATACATGTGATCCAAGACTTGAAACAAGATGAGACCGAAGAACAGGTTTA 539
|| |||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct 497 CGGCGGAAAGATATATGTAATCCAAGACTTGATACAAGATGAGACCGAAGAGCAGGTTTA 556
Query 540 CGACCTAGAAACGCAAACTTGGAAAGTCGTGGGAGTCCCTGTCCCTGACGAGAAAGCGGA 599
||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 557 CGACCTAGAAACGCAAACTTGGAAAGTTGTAGGAGTCCCTGTCCCTGACGAGAAAGTGGA 616
Query 600 TAGTAGACCGAAT-ATGGTGTCAAGTGTGTCATTGGAGGGGAAGGTTTATGCTAAGGATT 658
|| || ||||| | |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 617 TACTAAACCGA-TGATGGCGTCAAGTGTGTCACTGGAGGGGAAGGTTTATGCTATGGATG 675
Query 659 TTGGA-AGTATCAGTGTCTACAATCTGAGACAAGGTACAAGAAAGGAGAAACTGGAGT-T 716
|| | ||||||| ||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 676 ATG-ATAGTATCATTGTCTACAATCTGAGACAAGGTACAAGGAAGGAGAAACTGGA-TAT 733
Query 717 GCCAATTGATGATAGGTGGGTTTCGTGCATGTGTGTGGCAAACAATGTGCTCTTTGCttt 776
||||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 734 GCCAATTGATGGGAATTGGGTTTGGTGCATATGTGTGGCAAACAATGTGCTCTTTGCTTT 793
Query 777 ttttACCAAATATGGGCTACTGTGGCTTGACACAAAGCTTAACAACGTATGGAGAGTGGT 836
||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 794 TTTTACCAAATGTGGGCTAATGTGGCTTGACACAAAGCTTAAC---GTATGGAGAGTGGT 850
Query 837 TACTGGTGATGTGCAGACACTGCATCGAAAGTTGTATGGCTCTGCAATGGCGGAATATTA 896
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 851 TACTGGTGATGTGCAGACACTGCAGCGAAAGTTGTATGGCTCTGCAATGGCGGAATATTA 910
Query 897 TGGGAAGCTAGCTATTTTCTGGAGAGAAAGATACATTAGTACTAGTATTAATACTACA-A 955
||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| | | |
Sbjct 911 TGGGAAGCTAGCTATTTTCTGGAGAGAAAGAGACATTAGTACTACTATTACTACAA-AGA 969
Query 956 AGaataataataat-aataaCAAGAAGAAGGAAGAGAAGATTTGGTCTGCATTGATCGCG 1014
||| || || | | ||||| || || ||||| |||||||| |||| |||||||||||||
Sbjct 970 AGAGGAAGAAGA-TGAATAATAATAACAAGGAGGAGAAGATCTGGTGTGCATTGATCGCG 1028
Query 1015 TTGAATAGG 1023
||| |||||
Sbjct 1029 TTGGATAGG 1037
> Ahg902101 jgi|Araly1|902101|Al_scaffold_0004_2751
Length=504
Score = 270 bits (146), Expect = 2e-71
Identities = 267/319 (84%), Gaps = 33/319 (10%)
Strand=Plus/Plus
Query 1025 CTCTTGTTCATTCTC-TCCAAGCTGAAGTTATCCAGCGAGGTAATT-CCATGCTCGAAGC 1082
||||||||||||||| | |||||||| | ||||||||| ||| ||| |||||||||||||
Sbjct 176 CTCTTGTTCATTCTCGT-CAAGCTGAGGATATCCAGCGCGGT-ATTGCCATGCTCGAAGC 233
Query 1083 TTCTCTAGCAAGCAGTAGCCCT-C--T-----ACCGGAAGTAGTTTTATCTTCTTGCTGT 1134
|||||||||||||||||||||| | | ||||| || || |||| |||||||||||
Sbjct 234 TTCTCTAGCAAGCAGTAGCCCTCCTTTGGAAGACCGGGAGAAGCTTTACCTTCTTGCTGT 293
Query 1135 TGGATATTACCGGACTGGGGA--ACTC---GA-TA---A--TA--GG-A---T-CAT--- 1173
|| |||||||||||||||||| |||| || | | || || | | ||
Sbjct 294 TGCATATTACCGGACTGGGGATTACTCAAAGAGCAGGCAGCTAGTGGAACGTTGTATCGA 353
Query 1174 GATTCAACATCATTGGAGGCAATCTTTGGTCTTAAAGAAATCCATTGAAGACAAGATCGC 1233
|||||||| | ||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 354 GATTCAACCTGATTGGAGGCAAGCTTTGGTCTTAAAGAAAACTATTGAAGACAAGATCGC 413
Query 1234 TAAGGATGGTGTTATTGGGATAGGCATCACAGCTACAACCGTTGGCCTCATAGCTAGTGG 1293
||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 414 AAAGGATGGTGTTATTGGGATAGGCATCACGGCTACAGCCGTTGGCCTCATAGCTGGTGG 473
Query 1294 AATCGCTGCAGCTTTGGCT 1312
|||||||||||||||||||
Sbjct 474 AATCGCTGCAGCTTTGGCT 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5