BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41380.1 Length=1021 Score E Sequences producing significant alignments: (Bits) Value Ahg934965 jgi|Araly1|934965|scaffold_402953.1 1242 0.0 > Ahg934965 jgi|Araly1|934965|scaffold_402953.1 Length=854 Score = 1242 bits (672), Expect = 0.0 Identities = 763/807 (95%), Gaps = 5/807 (1%) Strand=Plus/Plus Query 37 AAC-AATGGCGAAATTATTCATCAAGCAAGCAGAGCAATATGCAGCAGCCCGACCCAGTT 95 ||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 20 AACAAATGGCGAAATTATTCATCAAGCAAGCGGAGCAATACGCAGCAGCCCGACCGAGTT 79 Query 96 ACCCCACCAAACTCTTCGAATATATCGCATCGAAAACACCGTGCCACGACCTTGCCTGGG 155 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 80 ACCCGACCAAACTCTTCGAATATATCGCATCGAAAACACCGTGCCACGACCTTGCTTGGG 139 Query 156 ACGTTGGCGCCGGAAGCGGCCAAGCCTCACGATCGCTAGCCGGAATCTACAAGAACGTGA 215 |||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 140 ACGTCGGCGCCGGAAGCGGTCAAGCCTCACGATGGCTAGCCGGAATCTACAAGAACGTGA 199 Query 216 TTGCTACAGACACGAGCTCAAAGCAACTTGAATTTGCTGCAAAGCTTCCCAACGTCCGTT 275 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 200 TTGCTACCGACACGAGCTCGAAGCAACTTGAATTTGCTGCAAAGCTTCCCAACGTCCGTT 259 Query 276 ACGAGATCACTCCACCGACGATGTCTTCATCGGAGATCGAGAAGCTAGTAGCACCTGAAT 335 |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| Sbjct 260 ACGAGATCACTCCACCAACGATGTCTTCATTGGAGATAGAGAAGCTAGTAGCACCTGAAT 319 Query 336 CATCAGTTGATTTAGTCACCGTCGCTCAAGCCCTTCATTGGTTCGACCTCACGAACTTTT 395 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 320 CATCAGTCGATTTAGTCACCGTCGCACAAGCCCTTCATTGGTTCGACCTCACGAACTTTT 379 Query 396 ACAGCAACGTGAAACACGTGCTCAAGAAACCCAACGGAGTAATCGCCGCCTGGTGCTACA 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 ACAGCAACGTGAAACACGTGCTCAAGAAACCCAACGGAGTAATCGCCGCCTGGTGCTACA 439 Query 456 CCAATCCGGAAGTTAACGACGCCGTGGACAAGGTCTTTC-AACGGTTTTACGATGAGAAA 514 |||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||| Sbjct 440 CCAATCCGGAGGTTAACGCCGCCGTGGACAAGGT-TTTCCAACGGTTTTACGATGAGAAA 498 Query 515 CTTGGTCCTCATTGGGATCTAGCGCGACGGCTTGTGGAGGATGGGTACAGAGGAATTGAG 574 ||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 499 CTTGGCCCTCATTGGGATAAAGCGAGGCGGCTTGTGGAGGATGGGTACAGAGGAATTGAG 558 Query 575 TTTCCGTTCGAGAAAGTGGATAATGATGAGTCAACGGAAAGTCAAAGTTTTCCGGTGAGG 634 || ||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||| Sbjct 559 TTCCCGTTCGAGAAGGTGGATAATGATGAGTCAACGGAAAGTCAAAGTTTGCCGATAAGG 618 Query 635 TTTGTAACGGAGAAAGAAATGGTGTTTGAAGAGTATATGACGTATCTGAGGTCATCTTCG 694 || || || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 619 TTCGTGACTGAGAAAGAAATGGTGTTTGAAGAGTATATGACTTATCTGAGGTCATCTTCG 678 Query 695 GCGTATCAGACGGCTAAGGAGAAAGGTTTAGAGCTTTTGACGGCTGAGATGGAAGGAGAG 754 |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 679 GCGTATCAGACGGCTAAGGAGAAAGGTTTAGAGCTTTTGACGACGGAGATGGAAGGAGAA 738 Query 755 TTTGCTGGTTCGTGGAAAGAAGATGGGAAAGAGAAGAAAGTTGTTAGGTATCCGATTTAT 814 ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| | Sbjct 739 TTTGCTGATTCGTGGAAAGAAGATGGGAAGGAGAAGAAAGTTGTTAGGTTTCCGATTCA- 797 Query 815 CT-GTTGATCGGAAGAGTTGCAGAAGA 840 || ||||||||||||||||| |||||| Sbjct 798 CTTGTTGATCGGAAGAGTTGGAGAAGA 824 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37970425332 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5