BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41430.1 Length=995 Score E Sequences producing significant alignments: (Bits) Value Ahg483215 jgi|Araly1|483215|fgenesh2_kg.4__2275__AT2G41430.2 1029 0.0 > Ahg483215 jgi|Araly1|483215|fgenesh2_kg.4__2275__AT2G41430.2 Length=895 Score = 1029 bits (557), Expect = 0.0 Identities = 690/750 (92%), Gaps = 26/750 (3%) Strand=Plus/Plus Query 255 CCATGATCTAGAGTTTTGAGAATGGCGATGGTATCAGGAAGACGATCTACTCTAAACCCC 314 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 CCAAGATCTAGAGATTTGAGAATGGCGATGGTATCAGGAAGACGATCTACTCTAAACCCC 222 Query 315 GACGCACCTCTTTTTATTCCGGCAGCTGTACGACAAGTGGAAGATTTCTCACCGGAGTGG 374 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 GACGCACCTCTCTTTGTTCCGGCAGCTGTACGACAAGTGGAAGATTTCTCACCGGAGTGG 282 Query 375 TGGCAATTGGTGACAACTTCGACTTGGTACCCTGATTACTGGATCAGTCAGCAGCAGCAA 434 ||||||||||| ||||||||||||||||||| ||| ||||||||||| | ||||| ||| Sbjct 283 TGGCAATTGGTCACAACTTCGACTTGGTACCATGACTACTGGATCAG-C--CAGCATCAA 339 Query 435 GG-CGCGGATGGTTTCTATGACAACGGAGAGAATGAGAATGGTGGAGGTCATATCGATGT 493 || | | ||||||||||||||||| ||||||||||| ||||||||||| || | ||||| Sbjct 340 GGTC-CAGATGGTTTCTATGACAATGGAGAGAATGAAAATGGTGGAGGCCAGGTTGATGT 398 Query 494 AGCTGATCTTCTTCCAGAATCATTTGATTTTGATGATATGGAAGATTTCTTTGACACTGA 553 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 399 AGCTGATCTTCTTCCAGAATCATTTGATTTTGATGACATGGAAGATTTCTTTGAAACTGA 458 Query 554 TGCTGCTGAGTTTGATCAAGGATTCGATGGAAGAATGTATTACCAAGCACCTTCCGAATT 613 |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 459 TGCTGCTGAGTTTGATCAAGGATTTGATGGACGAATGTATTACCAAGCACCTTCCGAATT 518 Query 614 TGGCTTTGGAAAGAATGGTGAGATGGTTAAGAAATCAAGTGGAAACAGGAGCCCGAGATC 673 |||||||||||||||||||||||||||| |||||||| ||| |||||||| |||| ||| Sbjct 519 CGGCTTTGGAAAGAATGGTGAGATGGTTAGGAAATCAACTGGTAACAGGAGTCCGAAATC 578 Query 674 GATTGTGGAACCAGCTAAGTATGCGGAAAAGCCAGCGAAATGGGGAAACCAGAGGGTTGC 733 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 GATTGTGGAACCGGCAAAGTATGCGGAAAAGCCAGCGAAATGGGGAAACCAGAGGGTTGC 638 Query 734 TGCTGCTCCGAGAAACATCCACCAGCCTCGCTGAAGA-GATATGTTGTTAACTAGTCAGA 792 |||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 639 TGCT-C-CA-AGAAACATCCACCAGCCTCGCTGAAGAAGATATGTTGTTAACTAGTCAGA 695 Query 793 GAAGTCAGAGCAGTTCGGTCTGTGTATCTTTAGCCACCAC---TGTACCTTTGTAATTTT 849 | |||||||||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 696 -A-GTCAGAGCAGTTTGGTCC-TGTATCTTTAGCCACCACCACTGTACCTTTGTAATTTT 752 Query 850 TAGTATTTGCTTCCACA-ACAAAAATCTGTAACTTTGTATCTTTATGATGTTCATTCTCA 908 ||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| Sbjct 753 TAGTATTTGCTTCCACATA-AAAAATCTGTAACTTTGTACCTTTATGATGTTCATTCTCA 811 Query 909 AACTTGCT---ATCACaaaaatgtaaaaacataaaaaaaaaaaaaTGTAAACTTTGAAGA 965 | |||| | ||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 812 A-CTTGTTGTTATCTCAAAAATGTAAAAACATAAAAAAAA-----TGTAAACTTTGAAGA 865 Query 966 GAAATGAGAACTAGAGTTTATTTCCTACCT 995 ||||||||||||||||||||||||| |||| Sbjct 866 GAAATGAGAACTAGAGTTTATTTCCCACCT 895 Score = 219 bits (118), Expect = 4e-56 Identities = 157/174 (90%), Gaps = 10/174 (6%) Strand=Plus/Plus Query 1 AGCTTCGTCACCGAACCTTACTTTATATATTAGTCCTTCTTCTTCTCATCTTCTCGCAAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 AGCTTCGTCACCGAACCTTACTTTATATATTAGTCCTTCTTCTTCTCATCTTCTGGCAAC 60 Query 61 GTAGGTTCTGGTGAATGATCCTAATCCGTTTAGCTT-TTaaaaaaaTAAGAAGACATATT 119 |||||||||||||| |||||||||||||||| |||| ||||||| | | ||||||||||| Sbjct 61 GTAGGTTCTGGTGATTGATCCTAATCCGTTTTGCTTGTTAAAAAGA-A-GAAGACATATT 118 Query 120 T--ATCAACTTGATCAACTTGAGCAAGTTGCAGCAGATATTTTCCTCGGCCAAG 171 | ||||| | |||||||||||||| | |||||||||||||||| |||||| Sbjct 119 TTTATCAA----A-CAACTTGAGCAAGTAGAAGCAGATATTTTCCTCAGCCAAG 167 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36979229490 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5