BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41440.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933191 jgi|Araly1|933191|scaffold_401179.1 121 2e-26
Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761 113 4e-24
Ahg934151 jgi|Araly1|934151|scaffold_402139.1 93.5 5e-18
Ahg887774 jgi|Araly1|887774|Al_scaffold_0085_3 82.4 1e-14
> Ahg933191 jgi|Araly1|933191|scaffold_401179.1
Length=635
Score = 121 bits (65), Expect = 2e-26
Identities = 183/235 (78%), Gaps = 27/235 (11%)
Strand=Plus/Plus
Query 582 GAACAAGACGAGAGGGCCCTGCAATTTCTGCGAATTCTCCAGCAGCAGATATGGATGCAG 641
||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 29 GAAGAAGACGAGAGTTCCCTGCAATTTCTGCGAATTCTCCAGCAGCAGATACGGAT---- 84
Query 642 CTCTGAAGATAAG-CTGCAGGAGCAAGACAATGAAG---CAGTGCTGCGGAAAGAAGTCG 697
| ||| | ||| || ||||| |||||||| |||| ||||||||||||||||||||
Sbjct 85 -T-TGACCA-AAGTCTACAGGATCAAGACAAGGAAGAAACAGTGCTGCGGAAAGAAGTC- 140
Query 698 A-GAGATTACGG-CTTTTGATCAAGAGAATGACTGGGA-AGGAAGAT-ATTGTC-AGCTT 752
| ||||||||| | | ||||| ||| |||||||| | || | || || | | |||||
Sbjct 141 ATGAGATTACGATCCCT-GATCAGGAGGATGACTGGTAGAG-ACGACGAT-G-CGAGCTT 196
Query 753 CACCGAGCTGCTAGCTCTT-CAAAGTCACCTT-ATGGATGTCCGATC-CATTGTG 804
||| ||||||| || ||| ||| |||| || | | |||||| | | |||||||
Sbjct 197 CACTGAGCTGCAAGAACTTACAA-GTCATCTCGA-GAATGTCC-AGCGCATTGTG 248
> Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761
Length=2934
Score = 113 bits (61), Expect = 4e-24
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 32 ATGGCGCCAAAGAGAGCATCGCCGATGCAGTCTTCTCTGTACTCTATCGGTGATTACGAG 91
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1 ATGGCGCCAAAGAGAGCATCGCCGATGCAGCCTTCTCTGTACCCTATCGGTAATTACGAG 60
Query 92 GTTGCAGTGGATG 104
|| ||||||||||
Sbjct 61 GTCGCAGTGGATG 73
> Ahg934151 jgi|Araly1|934151|scaffold_402139.1
Length=720
Score = 93.5 bits (50), Expect = 5e-18
Identities = 104/128 (81%), Gaps = 12/128 (9%)
Strand=Plus/Plus
Query 554 AGA-TGAAGAGGAAGCGAAGAGATCTAACGAACAAGACGA-GAG-G-GCCCTGCAATTTC 609
||| |||||| |||| ||| |||| | | ||| ||||||| ||| | ||| |||||||||
Sbjct 13 AGATTGAAGATGAAGGGAAAAGATATCATGAAGAAGACGACGAGAGTGCCATGCAATTTC 72
Query 610 TGCGAATTCTCCAGCAGCAGATATGGATGCAGCTCTGAAGATAAG-CTGCAGGAGCAAGA 668
||||||||||||||||||||||| |||| | |||| | ||| || ||||| |||||
Sbjct 73 TGCGAATTCTCCAGCAGCAGATACGGAT-----T-TGAACA-AAGTCTACAGGATCAAGA 125
Query 669 CAATGAAG 676
||||||||
Sbjct 126 CAATGAAG 133
> Ahg887774 jgi|Araly1|887774|Al_scaffold_0085_3
Length=414
Score = 82.4 bits (44), Expect = 1e-14
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 582 GAACAAGACGAGAGGGCCCTGCAATTTCTGCGAATTCTCCAGCAGCAGATATGGAT 637
||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 GAAGAAGACGAGAGTTCCCTGCAATTTCTGCGAATTCTCCAGCAGCAGATACGGAT 115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5