BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41630.1
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934997 jgi|Araly1|934997|scaffold_402985.1 1594 0.0
> Ahg934997 jgi|Araly1|934997|scaffold_402985.1
Length=980
Score = 1594 bits (863), Expect = 0.0
Identities = 943/982 (96%), Gaps = 3/982 (0%)
Strand=Plus/Plus
Query 178 ttAGGGTTTTCATTTGGAATCATGTCGGATGCGTATTGTACGGATTGTAAAAAGGAGACG 237
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAGGGTTTTC-TTTGAAATCATGTCGGATGCGTATTGTACGGATTGTAAAAAGGAGACG 59
Query 238 GAGTTGGTTGTCGATCACTCAGCCGGAGATACCCTTTGCTCCGAGTGTGGTTTGGTTTTG 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAGTTGGTGGTCGATCACTCAGCCGGAGATACCCTTTGCTCCGAGTGTGGTTTGGTTTTG 119
Query 298 GAATCTCACTCCATTGATGAGACCTCTGAGTGGCGTACCTTCGCTAATGAATCTTCCAAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAATCTCACTCCATTGATGAGACCTCTGAGTGGCGTACCTTCGCTAATGAATCTTCCAAC 179
Query 358 AGCGATCCCAATCGTGTCGGTGGTCCAACCAACCCGCTTCTCGCTGATAGTGCTTTAACC 417
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||
Sbjct 180 AGCGATCCCAATCGTGTCGGTGGTCCAACCAATCCGCTTCTCGCCGATAGTGCTCTCACC 239
Query 418 ACTGTTATCGCTAAGCCCAATGGTTCATCTGGTGATTTCTTGTCTTCTTCTCTCGGGAGG 477
|||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 240 ACTGTTATCGCTAAGCCCAATGGTTCCTCCGGTGATTTCCTGTCTTCTTCTCTCGGGAGG 299
Query 478 TGGCAGAATCGTAACTCCAATTCCGATCGTGGTTTGATTCAAGCTTTTAAAACCATTGCT 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 TGGCAGAATCGTAACTCCAATTCCGATCGTGGTTTGATTCAAGCGTTTAAAACCATTGCT 359
Query 538 ACCATGTCTGAAAGGTTGGGACTTGTTGCAACTATCAAGGATCGGGCTAATGAGTTATAT 597
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 360 ACCATGTCTGAAAGGTTGGGACTTGTTGCGACTATCAAGGATCGGGCTAATGAGATATAT 419
Query 598 AAGAGGCTGGAGGATCAGAAGTCAAGCAGGGGAAGAAATCAGGATGCACTTTATGCAGCC 657
||||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||
Sbjct 420 AAGAGGCTGGAGGATCAAAAGACAACCAGGGGAAGAAATCAGGATGCACTCTATGCAGCC 479
Query 658 TGTCTGTACATTGCTTGTCGCCAAGAGGACAAGCCACGAACTATTAAGGAAATATGCGTT 717
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 TGCCTGTACATTGCCTGTCGCCAAGAGGACAAGCCACGAACCATTAAGGAAATATGCGTT 539
Query 718 ATTGCCAATGGGGCGACAAAGAAGGAAATTGGCCGAGCAAAAGACTACATTGTTAAGACA 777
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTGCCAATGGTGCGACAAAGAAGGAAATTGGCCGAGCAAAAGACTACATTGTTAAGACA 599
Query 778 TTGGGACTGGAGCCTGGTCAGTCTGTGGATTTAGGAACTATACACGCTGGTGATTTCATG 837
||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 600 TTGGGACTGGATCCTGGTCAGTCTGTGGAACTAGGCACAATACACGCTGGTGATTTCATG 659
Query 838 AGAAGGTTCTGCTCCAACCTTGCAATGTCTAACCATGCGGTGAAAGCTGCTCAGGAAGCT 897
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 660 AGAAGGTTCTGCTCCAACCTTGGAATGTCTAACCATGCGGTTAAAGCTGCTCAGGAAGCT 719
Query 898 GTGCAAAAATCTGAGGAATTTGATATAAGGAGGAGTCCTATATCAATAGCAGCAGTAGTC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTGCAAAAATCTGAGGAATTTGATATAAGGAGGAGTCCTATATCAATAGCAGCAGTAGTT 779
Query 958 ATCTATATCATAACCCAGCTGTCTGATGACAAGAAGACTCTCAAAGATATATCG-CATGC 1016
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 780 ATCTACATCATAACCCAGCTTTCTGATGACAAGAAGACTCTCAAAGATATATCGACA-GC 838
Query 1017 GACAGGAGTAGCAGAAGGGACAATAAGGAATTCATACAAAGACTTGTATCCACATCTGTC 1076
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 839 GACAGGAGTAGCAGAAGGGACAATAAGAAATTCATACAAAGACTTGTACCCACATCTGGC 898
Query 1077 AAAGATAGCACCAAGTTGGTATGCAAAGGAAGAGGATCTGAAAAACCTGTCAAGTCCTTG 1136
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 899 AAAGATAGCACCAAGTTGGTATGCTAAGGAAGAGGATCTTAAAAACCTGTCAAGTCCTTG 958
Query 1137 AAGTCGTTTCTTGATTCTTCTA 1158
|||| |||||||||||||||||
Sbjct 959 AAGTTGTTTCTTGATTCTTCTA 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5