BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41680.1 Length=1811 Score E Sequences producing significant alignments: (Bits) Value Ahg902143 jgi|Araly1|902143|Al_scaffold_0004_2793 2649 0.0 > Ahg902143 jgi|Araly1|902143|Al_scaffold_0004_2793 Length=1596 Score = 2649 bits (1434), Expect = 0.0 Identities = 1545/1598 (97%), Gaps = 10/1598 (1%) Strand=Plus/Plus Query 28 ATGGCTGCGTCTCCCAAGATAGGCATCGGTATTGCctccgtctcatcgcctcaccgtgtc 87 ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||| Sbjct 1 ATGGCTGCGTCTCCCAAGATAGGCATCGGAATTGCCTCCGTCTCCTCGTCTCACCGCGTC 60 Query 88 tccgccgcctcatccgctctttctcctcc-tcctcatctcTTCT-T-TC-TCACTACTAC 143 ||||||||||||||||||||||||||||| | ||||||||||| | || ||||||||| Sbjct 61 TCCGCCGCCTCATCCGCTCTTTCTCCTCCGT-ATCATCTCTTCTCTCTCAGCACTACTAC 119 Query 144 TACTAC--C-ACACGTCACGGCGGCTCCTAT-CTCCTCCGTCAACCAACCCGAACTCGCT 199 |||||| | ||||||||||||||||||| | || ||||||||||||||||||||||||| Sbjct 120 TACTACTACTACACGTCACGGCGGCTCCT-TCCTTCTCCGTCAACCAACCCGAACTCGCT 178 Query 200 CTTCTGATTCCCTCCGCCTCAGAGTCTCCGCCACCGCCAATTCTCCGTCTTCTTCTTCTT 259 |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 179 CTTCCGATTCCCTCCGCCTCAGAGTCTCCGCCACCGCCAATTCGACGTCTTCTTCTTCAG 238 Query 260 CAGGAGGCGAGATTATCGAGAATGTAGTGATTATAGGCTCCGGTCCCGCCGGTTATACGG 319 || |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 239 GAGCAGGCGAGATTATCGAGAATGTAGTGATTATAGGCTCAGGTCCGGCCGGTTATACGG 298 Query 320 CGGCGATATATGCAGCGCGCGCCAATTTGAAGCCGGTGGTTTTTGAAGGGTATCAGATGG 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CGGCGATATATGCAGCGCGCGCCAATTTGAAGCCGGTGGTTTTTGAAGGGTATCAGATGG 358 Query 380 GCGGAGTTCCCGGTGGACAGTTGATGACAACTACTGAAGTTGAGAATTTTCCGGGATTCC 439 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 359 GCGGAGTTCCCGGTGGACAGTTGATGACAACCACTGAAGTTGAGAATTTTCCAGGATTCC 418 Query 440 CAGACGGTATCACGGGTCCCGATTTAATGGAGAAAATGAGAAAGCAAGCAGAGAGGTGGG 499 |||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| |||| Sbjct 419 CAGACGGTATTACGGGGCCGGATTTAATGGAGAAAATGAGAAAGCAAGCTGAGAGATGGG 478 Query 500 GAGCAGAGTTGTATCCAGAAGATGTTGAATCTCTTAGTGTCACAACTGCTCCTTTTACTG 559 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 479 GAGCAGAGTTGTATCCAGAAGATGTTGAATCTCTTAATGTCACAACTGCTCCTTTTACTG 538 Query 560 TGCAAACTAGTGAACGTAAGGTCAAGTGCCATAGTATTATATATGCCACTGGCGCTACAG 619 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 539 TGCAAACTAGTGAACGTAAGGTCAAGTGCCATAGTATTATATATGCCACTGGAGCTACAG 598 Query 620 CAAGGAGGTTAAGGTTACCTCGAGAGGAAGAATTCTGGAGTAGGGGGATAAGTGCTTGTG 679 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 599 CAAGGAGGTTAAGGTTACCTCGAGAGGAAGAGTTCTGGAGTAGGGGGATAAGTGCTTGTG 658 Query 680 CTATCTGTGATGGAGCTTCGCCTTTATTTAAGGGGCAAGTACTTGCCGTGGTTGGAGGAG 739 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 659 CAATCTGTGATGGAGCTTCTCCTTTATTTAAGGGGCAAGTACTTGCCGTGGTTGGAGGAG 718 Query 740 GAGATACGGCTACAGAGGAAGCCTTGTATCTCACGAAATATGCCCGTCATGTTCATTTGC 799 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 719 GAGATACGGCTACAGAGGAAGCCTTGTACCTTACGAAATATGCCCGTCATGTTCATTTGC 778 Query 800 TTGTTCGCAGAGATCAGTTGAGAGCTTCCAAGGCTATGCAAGATAGAGTGATCAACAATC 859 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 TTGTTCGCAGAGACCAGTTGAGAGCTTCCAAGGCTATGCAAGATAGAGTGATCAACAATC 838 Query 860 CAAACATCACAGTGCATTACAACACGGAAACCGTGGACGTATTGAGCAACACCAAGGGAC 919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CAAACATCACAGTGCATTACAACACGGAAACCGTGGACGTATTGAGCAACACCAAGGGAC 898 Query 920 AGATGTCTGGCATTCTACTCAGAAGACTTGATACGGGTGAAGAAACTGAGCTGGAGGCAA 979 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 899 AGATGTCTGGCATTCTACTCAGAAGACTTGATACGGGTGAAGAAACCGAGCTGGAGGCAA 958 Query 980 AAGGATTGTTTTATGGAATAGGGCATTCGCCAAACAGTCAGTTATTGGAAGGCCAAGTCG 1039 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 AAGGATTGTTTTATGGAATAGGGCATTCGCCAAACAGTCAGTTATTGGAAGGCCAAGTCG 1018 Query 1040 AACTCGACAGCTCCGGGTACGTCTTGGTTCGGGAAGGAACATCAAATACATCAGTTGAAG 1099 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 AACTCGACAGCTCGGGGTACGTCTTGGTTCGGGAAGGAACATCAAATACATCAGTTGAAG 1078 Query 1100 GTGTATTTGCTGCAGGAGATGTGCAGGACCACGAATGGAGACAAGCTGTAACTGCTGCTG 1159 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1079 GCGTATTTGCTGCAGGAGATGTGCAGGACCATGAATGGAGACAAGCTGTAACTGCTGCGG 1138 Query 1160 GATCAGGATGCATAGCTGCTTTGTCAGCCGAGAGATACCTCACAAGTAACAATCTTCTTG 1219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 GATCAGGATGCATAGCTGCTTTGTCAGCCGAGAGATACCTCACAAGTAACAATCTTCTTG 1198 Query 1220 TTGAATTTCACCAGCCTCAAACTGAAGAGGCCAAGAAAGAATTCACACAACGGGATGTCC 1279 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1199 TTGAATTTCACCAGCCTCAAACTGAAGAGGCCAAGAAAGAATTCACACAACGCGATGTCC 1258 Query 1280 AAGAAAAGTTTGACATCACTCTTACAAAGCACAAGGGACAGTATGCTCTTAGAAAACTAT 1339 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1259 AAGAAAAGTTTGACATCACTCTTACAAAGCATAAGGGACAGTATGCTCTTAGAAAATTAT 1318 Query 1340 ACCATGAGAGTCCAAGAGTTATATTGGTACTATACACTTCACCAACATGTGGCCCCTGTA 1399 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1319 ACCATGAGAGTCCAAGAGTTATATTGGTACTATACACTTCACCAACGTGTGGCCCCTGTA 1378 Query 1400 GGACTCTGAAGCCTATTTTGAACAAGGTGGTCGATGAGTATAACCATGATGTGCATTTTG 1459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 GGACTCTGAAGCCTATTTTGAACAAGGTGGTCGATGAGTATAACCATGATGTGCATTTTG 1438 Query 1460 TTGAGATTGACATCGAGGAAGATCAAGAAATTGCTGAAGCAGCTGGAATTATGGGAACCC 1519 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1439 TTGAGATTGACATTGAGGAAGATCAAGAAATTGCTGAAGCAGCTGGAATCATGGGAACCC 1498 Query 1520 CATGTGTGCAGTTCTTCAAGAACAAGGAAATGCTCAGGACTATATCGGGTGTGAAGATGA 1579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 CATGTGTGCAGTTCTTCAAGAACAAGGAAATGCTCAGGACTATATCGGGTGTGAAGATGA 1558 Query 1580 AGAAAGAGTACCGAGAATTCATTGAGGCCAATAAATGA 1617 ||||||||||||| |||||||||||||||||||||||| Sbjct 1559 AGAAAGAGTACCGGGAATTCATTGAGGCCAATAAATGA 1596 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67991087325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5