BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41870.1 Length=1495 Score E Sequences producing significant alignments: (Bits) Value Ahg483270 jgi|Araly1|483270|fgenesh2_kg.4__2330__AT2G41870.1 1223 0.0 Ahg486202 jgi|Araly1|486202|fgenesh2_kg.5__2194__AT3G57540.1 396 3e-109 > Ahg483270 jgi|Araly1|483270|fgenesh2_kg.4__2330__AT2G41870.1 Length=1374 Score = 1223 bits (662), Expect = 0.0 Identities = 877/978 (90%), Gaps = 25/978 (3%) Strand=Plus/Plus Query 394 TTCCTAAACCCTATTTCTCAGATTATGCTGACTCTTTACCATCAAGAAAGGTCACCGGAC 453 ||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 354 TTCTTAAACCCTAATTCTCAGATTATGCTGACTCTTTACGATCATGAAAGGTCACCGGAC 413 Query 454 GCCACAAGTAATGATC--G-CGATGAGACGCCAGAGACTGTGGTTAGAGA-AGTCCACGC 509 ||||||||||| | | | ||||||||| | ||||||||||| ||||| | ||||||| Sbjct 414 GCCACAAGTAACCACCAGGATGATGAGACGACGGAGACTGTGGTGAGAGACA-TCCACGC 472 Query 510 GCTAACTCCAGCGCCGGAGGATAATTCCCGGACGATGACGGCGACG-C--TACCTCCACC 566 | |||||||||| ||||||||||||||||||||||||||||||||| | | |||||||| Sbjct 473 GGTAACTCCAGCTCCGGAGGATAATTCCCGGACGATGACGGCGACGACGTTGCCTCCACC 532 Query 567 GCCTGCTTTCCGAGGCTATTTTTCTCCTCCAAGGTCAGCGACGACGATGAGCGAAGGA-- 624 ||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||| Sbjct 533 GCCTGCTTTCCGAGGCTATTTTTCTCCTCCACGGTCAACAACGACCATGAGCGAAGGAGC 592 Query 625 ----------GAGAACTTCACAACTATAAGCAGAGAGTTCAACGCTCTAGTCATCGCCGG 674 || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 593 TTCTTCCGGCGAAAACTTCACAACAATAAGCAGAGAGTTCAACGCTCTAGTCATCGCCGG 652 Query 675 ATCCTCCATGGAGAACAACGAACTAATGACTCGTGACGTCACGCAGCGTGAAGATGAGAG 734 ||||||||||| ||||| |||| || | ||||||||||||| |||||||||||||| || Sbjct 653 CTCCTCCATGGAAAACAATGAACCAACGGCTCGTGACGTCACACAGCGTGAAGATGAAAG 712 Query 735 ACAAGACGAGTTGATGAGAATCCACGAGGACACGGATCATGAAGAGGAAACGAATCCTTT 794 |||| |||| ||| |||| |||| |||||| | |||||| ||||| || ||||| ||||| Sbjct 713 ACAACACGACTTGTTGAGGATCCTCGAGGAGAGGGATCAAGAAGACGAGACGAACCCTTT 772 Query 795 AGCAATCGTGCCGGATCAGTATCCTGGTTCGGGTTTGGATCCTGGAAGTGATAATGGGCC 854 |||||||| ||||| |||||||| |||||||||||||||||||||||||| | |||||| Sbjct 773 GGCAATCGTTCCGGACCAGTATCCGGGTTCGGGTTTGGATCCTGGAAGTGAGATTGGGCC 832 Query 855 GGGTCAGAGTCGGGTTGGG-TCGACGGTGCAAAGAGTTAAGAGGGAAGAGGTGGAAGCGA 913 ||||||| |||| |||||| | ||||||||||| ||| |||||||||||||| || |||| Sbjct 833 GGGTCAGGGTCGAGTTGGGAT-GACGGTGCAAATAGTGAAGAGGGAAGAGGTTGAGGCGA 891 Query 914 AGATAACGGCGTGGCAGACGGCAAAACTGGCTAAGATTAATAACAGGTTTAAGAGGGAAG 973 |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| Sbjct 892 AGATAACGGCGTGGCAGACGGCAAAATTGGCAAAGATCAATAACAGGTTTAAGAGGGAAG 951 Query 974 ACGCCGTTATTAACGGTTGGTTTAATGAACAAGTTAACAAGGCCAACTCTTGGATGAAGA 1033 || ||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| Sbjct 952 ACACCGTTATTAACGGTTGGGTTAATGAACAAGTCCACAAGGCCAATTCTTGGATGAAGA 1011 Query 1034 AAATTGAGAGGAAGCTAGAGGAGAGAAAAGCAAAAGCGATGGAGAAAACGCAAAACAATG 1093 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1012 AAATTGAGAGGAAGCTAGAGGAGAAAAAAGCAAAAGCAATGGAGAAAACGCAAAACAATG 1071 Query 1094 TGGCGAAAGCGCAGAGGAAAGCGGAGGAGAGAAGAGCGACGGCAGAGGCAAAGAGAGGGA 1153 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 1072 TGGCGAAAGCGCAGAGGAAAGCGGAAGAGAGAAAAGCGACGGCAGAGGCAAAGAGAGGGA 1131 Query 1154 CAGAGGTTGCAAAAGTAGTTGAAGTTGCTAATCTCATGAGAGCCCTTGGACGTCCTCCTG 1213 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1132 CAGAGGTTGCAAAAGTAGTTGAAGTTGCTAATCTCATGAGAGCCGTTGGACGTCCTCCTG 1191 Query 1214 CCAAACGCTCCTTCTTCTCTTTCTCCTAATTTTTAGTTATATCAAACCATTAAATTAAAC 1273 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1192 CCAAACGCTCCTTCTTCTCTTTCTCCTAGTTTTTAGTTATATCAAACCATTAAACTAAAC 1251 Query 1274 AGTACTCGTTATATATCTAGTTAGTAAACAAAGGGGC-AGTTTTATAGCTCATGTACACA 1332 | |||| || ||||| |||||||||| |||| ||| | |||||||||| || |||||| Sbjct 1252 ATTACTTATTGTATATA-AGTTAGTAAAGAAAGAGGCCA-TTTTATAGCTTATATACACA 1309 Query 1333 TAATTGAGAGTGTAGTAC 1350 || ||||||||||||||| Sbjct 1310 TAGTTGAGAGTGTAGTAC 1327 Score = 429 bits (232), Expect = 3e-119 Identities = 322/363 (89%), Gaps = 15/363 (4%) Strand=Plus/Plus Query 8 TTGTTTTGCTCTTTAGAAATTACCG--A---TTTACG-CTGAAAAAATGTGAAAAATACA 61 ||||||||| |||||||||| |||| | |||| | || ||||||||||||||| | Sbjct 1 TTGTTTTGCCCTTTAGAAATCACCGCAAGGTTTTA-GATTG-AAAAATGTGAAAAATTTA 58 Query 62 ATCGATCGCATTATCTTTATCCCTAGCTAATCATTCATGTACAAGCATGTCTCCGAAGGT 121 ||||||||||||| ||| || |||||||||||||||| ||| |||||||||||||||| Sbjct 59 GTCGATCGCATTATTTTTGTCTCTAGCTAATCATTCATAAACAGGCATGTCTCCGAAGGT 118 Query 122 TAAAAGCAGTCGCTA-TTTACCGGACCAACGTAGTTTTCTCGAAGTGGTGGTCCGTTGTC 180 ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 119 TAAAAGCAGTCGCTATTTTACCGGACCAACGTAGTTTTCACAAAGTGGTGGTCCGTTGTC 178 Query 181 ATATTTTAAATTTATCACCTTCTTGAGAATTCCACATTTTTATCCTTTTTGTCATGTAGT 240 |||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||| Sbjct 179 ATATTTTAAAATTATCACCTTCTTGAGAATTCTACATTTTAATCCTTTTTGTCGTGTAGT 238 Query 241 GTATATTTTTTCCTCT-AACCTAATTAAAATCAAAAC-AAAATCCTTTG-ACCCAATTAG 297 | ||| || ||||||| || ||||||||| || ||| |||| |||||| ||| | |||| Sbjct 239 G-ATA-TTGTTCCTCTAAATCTAATTAAAGTCGGAACTAAAA-CCTTTGAACCTATTTAG 295 Query 298 CTTCGCGATATATCAGAAGAGATCAAACTACTTTGATCAGACCATGAtcttcttcttctt 357 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 CTTCGCGAGATATCAGAAGAGATCAAACTACTTTGATCAGACCATGATCTTCTTCTTCTT 355 Query 358 ctt 360 ||| Sbjct 356 CTT 358 Score = 62.1 bits (33), Expect = 1e-08 Identities = 35/36 (97%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 1420 ATTCAACTTAATTTTGATTTTTGAATAATGCGTTTG 1455 ||||||| |||||||||||||||||||||||||||| Sbjct 1339 ATTCAACGTAATTTTGATTTTTGAATAATGCGTTTG 1374 > Ahg486202 jgi|Araly1|486202|fgenesh2_kg.5__2194__AT3G57540.1 Length=1154 Score = 396 bits (214), Expect = 3e-109 Identities = 316/366 (86%), Gaps = 4/366 (1%) Strand=Plus/Plus Query 878 CGGTGCAAAGAGTTAAGAGGGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAGACGGCAA 937 ||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||| | Sbjct 665 CGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCGAAGATAACGGCGTGGCAAACGGCGA 724 Query 938 AACTGGCTAAGATTAATAACAGGTTTAAGAGGGAAGACGCCGTTATTAACGGTTGGTTTA 997 || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct 725 AAGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGTTGGTTGA 784 Query 998 ATGAACAAGTTAACAAGGCCAACTCTTGGATGAAGAAAATTGAGAGGAAGCTAGAGGAGA 1057 |||| || ||| | || || |||||||||||||||||||| |||||||| | || || | Sbjct 785 ATGAGCAGGTTCATAAAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAATTGGAAGATA 844 Query 1058 GAAAAGCAAAAGCGATGGAGAAAACGCAAAACAATGTGGCGAAAGCGCAGAGGAAAGCGG 1117 | | |||||| |||||||||||||| |||||||| ||||| ||||| || ||||| |||| Sbjct 845 GGAGAGCAAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAAAGGAAGGCGG 904 Query 1118 AGGAGAGAAGAGCGACGGCAGA-GGCAAAGAGAGGGACAGAGGTTGCAAAAGTAG-TTGA 1175 ||||||| |||||||||||||| || ||| |||||||| |||||||| | || | |||| Sbjct 905 AGGAGAGGAGAGCGACGGCAGAAGGAAAA-AGAGGGACGGAGGTTGCGAGGGT-GCTTGA 962 Query 1176 AGTTGCTAATCTCATGAGAGCCCTTGGACGTCCTCCTGCCAAACGCTCCTTCTTCTCTTT 1235 ||| |||||||| ||||||||| | ||||| ||||| |||||||| ||||||||| |||| Sbjct 963 AGTCGCTAATCTAATGAGAGCCGTGGGACGACCTCCGGCCAAACGATCCTTCTTCACTTT 1022 Query 1236 CTCCTA 1241 |||||| Sbjct 1023 CTCCTA 1028 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55954569905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5