BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41890.1
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935043 jgi|Araly1|935043|scaffold_403031.1 3602 0.0
> Ahg935043 jgi|Araly1|935043|scaffold_403031.1
Length=2323
Score = 3602 bits (1950), Expect = 0.0
Identities = 2183/2296 (95%), Gaps = 14/2296 (1%)
Strand=Plus/Plus
Query 4 AAGATGCTTCGAGCTCTGCTTTTGTGTCTCTCTTTAGTGTTCTTCTTGGCGTTTCAGATT 63
|||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||
Sbjct 18 AAGATGTTTCGAGCTCTGCTTTTGTCTCTCTCTCTAGGGTTCTTCTTGGCGTTTCAGTTT 77
Query 64 GTTGTTTCAGAGATTCAATTAGGTTCTAAG-CTCGTTGTTGGTGAAAACACCTTGTGGGT 122
|| ||||||||||||||| | |||||| || ||||||||||||||||||| |||||||||
Sbjct 78 GTGGTTTCAGAGATTCAACTGGGTTCT-AGACTCGTTGTTGGTGAAAACAGCTTGTGGGT 136
Query 123 ATCCAACAATGGTGATTTTGCTCTAGGtttttttAATCCACCTGGTTTGCTTAATCGGTT 182
||||||||||||||||||||||||||| ||||| ||||| |||||||| | ||| |||||
Sbjct 137 ATCCAACAATGGTGATTTTGCTCTAGGGTTTTTCAATCCCCCTGGTTTACCTAACCGGTT 196
Query 183 CAGCATTGGTATCTGGTTTAACTCCAATTCAATCCCTTATGATCAACGGAAGGTCGTTTG 242
||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 197 CAGCATTGGTATCCGGTTTAACTCCAATTCAATTCCTTCTGATCAACGGAAGGTCGTTTG 256
Query 243 GGTTGCTGGAGCAGGTGTTGTCGTTTCTGATAACAGCTCTTACTTTGAGCTTACTCGTAA 302
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 257 GGTTGCTGGAGCAGATGTTGTCGTTTCTGATAACAGCTCTTACTTTGAGCTTACTCGTGA 316
Query 303 TGGAGAATTGGTTTTGTTTGATTCTTTGTTGGGTGTTCCGGTTTGGAATAGCAAGACGAA 362
|||||| |||||||||| |||||||| ||| |||| |||||||||||| |||||||||||
Sbjct 317 TGGAGAGTTGGTTTTGTGTGATTCTTCGTTAGGTGCTCCGGTTTGGAACAGCAAGACGAA 376
Query 363 CCGGTTCTCTGTATCCTCTGCTTTGCTTCGTGATGATGGTAATCTTGTGTTGTTGAAAGA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 CCGGTTCTCTGTATCCTCTGCTTTGCTTCGTGATGATGGTAATCTTGTGTTGTTGAAAGA 436
Query 423 TAGAGAAGAGATTGTTTGGCAAAGCTTTGGTACTCCAACTGATACTTTGCTTCCAAACCA 482
|||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 437 TAGAGAAGAGATCGTTTGGCAAAGCTTTGGTACTCCTACTGATACTCTGCTTCCAAACCA 496
Query 483 AAAGTTTCCAGCTTTTGAGATGTTAAGAGCTGCTAGTGAGAATTCGAGGTCTAGTTATTA 542
|||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 497 AAAGTTGCCAGCTTTTGAGATGTTAAGAGCTGCTAGT--G-ATTCGAGGTCTAGTTATTA 553
Query 543 TAGTCTTCACTTGGAGGATTCGGGGAGGTTAGAGCTGAGATGGGAGAGTAACATTACTTT 602
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 554 CAGTCTTCACTTGGAGGATTCGGGGCGGTTAGAGCTGAGATGGGAGAGTAGCATTACTTT 613
Query 603 TTGGTCAAGCGGAAACGAAGTTGTgaagaagaagaagaagaagaagaaTATTGGGGCTGT 662
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 614 CTGGTCAAGCGGAAACGAAGTTGTGAAGAAGAAGAAGAAGAAGATGAATATTGGGGCTGT 673
Query 663 TCTTACTTCCGAAGGAGCTCTGTTTCTTGAGGATCAAGATCTGATGAGACCTGTTTGGTC 722
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TCTTACTTCTGAGGGAGCTCTGTTTCTTGAGGATCAAGATCTGATGAGACCTGTTTGGTC 733
Query 723 TGTTTTTGGGGAAGATCATAACGACACTGTGAAGTTCCGGTTTCTTAGGCTTGACCGGGA 782
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 734 TGTTTTTGGGGAAGATCATAACGACACTGTGAAGTTCCGGTTTCTCAGGCTTGACAGAGA 793
Query 783 TGGTAATCTGAGAATGTACTCGTGGAACGA-GGATTCAAGG-ATTTGGAAACCGGTTTGG 840
||||||||||||||||||||||||||| || | | || ||| ||||||||||||||||||
Sbjct 794 TGGTAATCTGAGAATGTACTCGTGGAATGATGTA-TC-AGGAATTTGGAAACCGGTTTGG 851
Query 841 CAAGCTGTTGAGAATCAGTGTCGTGTTTTCGCAACCTGTGGTTCGCAAGTTTGTTCCTTT 900
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 852 CAAGCTGTTGAGAATCAGTGTCGTGTTTTCGCGACCTGTGGATCGCAAGTTTGTTCCTTT 911
Query 901 AACAGTTCTGGATACACCGAATGCAATTGCCCTTTTAATGCTTTTGTATCGGTCTCGGAT 960
||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct 912 AACAGTTCTGGATACACCGAATGCAGTTGCCCTTTTAATGCTTTCGTATCGGCCTCGGAT 971
Query 961 CCTAAATGCTTGGTGCCTTATCAGAAGCCAGGCTGCAAATCTGGTTTCAACATGGTGAAG 1020
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 972 CCTAAATGTTTGGTGCCTTATCAGAAGCCAGGCTGCAAATCTGGTTTCGACATGGTGAAA 1031
Query 1021 TTCAAGAACTTGGAGTTGTATGGGATCTACCCGGCTAATGATTCTGTTATCTCTCAGATT 1080
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1032 TTCAAGAACTTGGAGTTGTATGGGATCTACCCGGCTAATGATTCTGTTGTTTCTCAGATT 1091
Query 1081 AGCTCCCAGAGATGCAAGAAGTTGTGTTTAGAGAATTCTGCTTGTACTGCAGTCACTTAC 1140
| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 1092 AACTCCCAGAGATGCAAGAAGTTGTGTTTAGAGGATTCTGCTTGTACTGCGGTTACTTAC 1151
Query 1141 ACGAACGATGGAGAGCCTCAATGTCGCATGAAGCTGACCCGATATATCAGCGGTTACTCT 1200
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 ACGAACGATGGGGATCCTCAATGTCGCATGAAGCTGACCCGATATATCAGCGGTTACTCT 1211
Query 1201 GACCCGTCTCTGAGTTCGATATCATATGTTAAAACATGTTTGGACCCAATTGCTGTTGAT 1260
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1212 GATCCATCTCTGAGTTCGATATCATATGTTAAAACATGTTTGGACCCGATTGCTGTCGAT 1271
Query 1261 CCAAATAATGTTTCTAAAGAGTCACCAGTGACTGTAACAAAGTCTCACAGTATCTGTATT 1320
|| | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1272 CC--A-AATGTTTCTAAAGAGTCACCAGTGCCTGTAACAAAGTCTCACAGTATCTGTCTT 1328
Query 1321 CCTTGTCTTGTCG-GTGCAACTTCCACTACACTTGTTCTGTTTCTTGGATTTCAGCTCGG 1379
||||||||||||| | |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1329 CCTTGTCTTGTCGCG-GCAACTTCCATTACACTTGTTCTGTTTCTCGGATTTCAGCTCGG 1387
Query 1380 TATCGTTGTGTACATTTACCGGAGGAAGAAGAAGCTAGCTAAGAAGAAAGCTGAACGATT 1439
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1388 TATCGTTGTGTACATTTACCAGAGGAAGAAGAAGCTAGCTAAGAAGAAAGCTGATCGATT 1447
Query 1440 CTCCAAAGCGACAAATCCGAAAGGTGTGATGATATTCTCTGTTGATGAGATTAAGGCCAT 1499
||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1448 CTCCAAAGCTACAAATCCGAAATGTTTGATGATATTCTCTGTTGATGAGATTAAGGCCAT 1507
Query 1500 GACCGATAACTTTGACAATAACATAGGACCACAGATATTCAAAGGGGTTATGCCGGAGAA 1559
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1508 GACCGATAACTTTGACCATAACATAGGACCGCAGATATTCAAAGGGGTTATGCCGGAGAA 1567
Query 1560 TGAACTTGTTGCTGTTAAAGAAGTGGAAGCAACATTAACAGAAGAAAGGAAGTTTAGGAG 1619
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1568 TGAACTTGTTGCTGTTAAAGAAGTGGAATCAACATTAACAGAAGAAAGGAAGTTTAGGAG 1627
Query 1620 CTCTGCATCCAAGATAGGAACAATGCATCACAAGAACCTAGCAAACCTTGAAGGTTATTG 1679
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1628 CTCTGCATCAAAGATAGGAACAATGCATCACAAGAACCTAGCAAAGCTTGAAGGTTATTG 1687
Query 1680 CTGCGAGCTAGGCAGGAGGTTTCTGGTTTACGAATATGCTAAGAATGGATCTATACTTGA 1739
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1688 CTGCGAGCTAGGCAGGAGGTTTCTGGTTTACGAATACGCTAAGAACGGGTCTATACTTGA 1747
Query 1740 CCATATTGTTGACCCTTTACGAAGCAAGAAACTAACTTGGAGGATAAGAACTGATACCTG 1799
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1748 CCACATTGTTGACCCTTTACGAAGCAAGAAACTAACTTGGAGAATAAGAACTGAAACCTG 1807
Query 1800 CTTAAGCGTGGCTAAAGCTCTTTGTTACCTCCACATGGAATGCAGAGAATTTGTCAGTCA 1859
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1808 CTTAAGCGTGGCTAAAGCTCTCTGTTACCTCCACACGGAATGCAGAGAATTTGTCAGTCA 1867
Query 1860 TGGGAACTTGAACTGCGGAAACATTCTGCTTGGGGAGGATTTGGAAGCTAAGTTAACAGA 1919
|||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||
Sbjct 1868 TGGGAACTTGAACTGCGGAAACATTCTGCTCGGGGAGGCTTTGGAATCTAAGTTAACAGA 1927
Query 1920 ATATGGATTCGGTTTATGTGCTGCAGATAAAGATGTTGAAGATTTTGGAAAGACGGTTTT 1979
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1928 ATACGGATTCGGTTTATGTGCTGCAGATAAAGACGTTGAAGATTTTGGAAAGACTGTTTT 1987
Query 1980 AGCTCTAATAACGGGTAGGTACGAACCAGAAGGAGTAGTGAGTGAATGGGTGTATAGAGA 2039
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1988 AGCTCTAATAACGGGTAGGTACGAACCAGATGGAGTAGTGAGTGAATGGGTGTATAGAGA 2047
Query 2040 GTGGATTGGAGGAAGGAAAGAAACCGTTGTAGACAAAGGATTAGAAGGATGCTTCGATGT 2099
|||||||| ||| ||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 2048 GTGGATTGAAGGGAGGAAAGAAACCGTTGTGGACAAAAGATTAGAAGGATGTTTCGATGT 2107
Query 2100 AGAGGAGCTTGAGCGGGTTTTGAGAATCTCATTTTGGTGTGTTCAGACGGATGAACGATT 2159
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 AGAGGAGCTCGAGCGGGTTTTGAGAATCTCATTTTGGTGTGTTCAGACGGATGAACGATT 2167
Query 2160 AAGACCATCAATGGGGGAAGTGGTGAAGGTTTTGGAAGGTACATTGTCTGTTGATCCACC 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2168 AAGACCATCAATGGGGGAAGTGGTGAAGGTTTTGGAAGGTACATTGTCTGTTGATCCACC 2227
Query 2220 ACCACCGCCTTTTGCTTGTGCAAGATCATCGCCCACTAACTCGTCAGAGTCTAGTCAATC 2279
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2228 ACCGCCGCCTTTTGCTTGTGCAAGATCATCGCCGACTAACTCGTCAGAGTCTAGTCAATC 2287
Query 2280 GTTGTACGAGCCATAA 2295
||||||||||||||||
Sbjct 2288 GTTGTACGAGCCATAA 2303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86426765905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5