BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G41960.1
Length=4052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321881 jgi|Araly1|321881|fgenesh1_pm.C_scaffold_4001938 5360 0.0
Ahg486257 jgi|Araly1|486257|fgenesh2_kg.5__2249__AT3G58050.1 1227 0.0
> Ahg321881 jgi|Araly1|321881|fgenesh1_pm.C_scaffold_4001938
Length=3657
Score = 5360 bits (2902), Expect = 0.0
Identities = 3441/3691 (93%), Gaps = 77/3691 (2%)
Strand=Plus/Plus
Query 279 ATGAACAAATACAAGTGTAAAACGATGCCGGGTTTAACAACACA--CATGAATGAGCATT 336
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1 ATGAACAAATACAAGTGTAAAACGATGCCGGGTTTAAC-ACACATGAAT-AATGAGCATT 58
Query 337 ACTCTTCTTCTGGGTTTTGGTCTGAGGACGACGATGGACTTACCTACGATCAGTTGGACC 396
|||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 59 ACTCTTCTCCTGGGTTTTGGTCTGAGGACGAAGATGGTGTTACCTACGATCAGTTGGACG 118
Query 397 AGTTCTGGAGTGAGCTGTCGTCGAAAGCTAGGCATGAGCTTCTTAGGATTGACAAGCAGA 456
|||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 119 AGTTCTGGAGTGAGCTGTCGCCTAAAGCTAGGCAGGAGCTTCTTAGGATTGACAAGCAGG 178
Query 457 CACTGTTTGAGCAAGCTCGCAAGAACATGTGCTGTTCCAGATGCCTTGGACTGTTGCTTG 516
| || |||||||||||||| |||||| |||||||||||||||||||||| ||| ||||||
Sbjct 179 CTCTATTTGAGCAAGCTCGTAAGAACCTGTGCTGTTCCAGATGCCTTGGCCTGCTGCTTG 238
Query 517 AAGGCTTCGCCCAGATTCTTTCTGCTGGGAGGGCCGCGTACGA-AAAA-A-------G-A 566
||||||||| |||||| ||||| ||||||||||||| ||||| |||| | | |
Sbjct 239 AAGGCTTCGTGCAGATTGTTTCTACTGGGAGGGCCGCATACGATAAAAGATTTCCTTGCA 298
Query 567 A-TGAT-GGGACCCTCCAAAG-----A-TAACTGTAAATCTA-ATGGCACTAGGAAATGT 617
| || ||| |||| |||| | |||| ||||||| | ||||||||||||||||
Sbjct 299 ACAAATCAGGAGCCTCTAAAGATCAAATTAACGGTAAATC-AGTTGGCACTAGGAAATGT 357
Query 618 ACGGTTGCGTACCAGAGCCCTCCTGTTCATCGATGGGGAGGTCTCACCACAACACGC-TC 676
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 358 ACGGTTGCGTACCAGAGCCCTGCTATTCATCGATGGGGAGGTCTCACCACAACACGCGAC 417
Query 677 GGGATGTATCACTCTTCTTGACTGCTTTTTGACTGCAAAAACTTTCAAAGGGCTTCAAAA 736
|||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 418 -GGATGTCTCACACTTCTTGACTGCTTTTTGAATGCAAAAACTTTCAAAGGGCTTCAAAC 476
Query 737 TGTCTTTGAAAGTAACCGTGCTCGAGAGAGGGAACGTGAGTTGCTTTATCCTGATGCTTG 796
||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 477 TGTGTTTGAAAGTGCCCGTGCTCGAGAGAGGGAACGTGAATTGCTTTATCCTGATGCTTG 536
Query 797 TGGTGGCGGTGGTCGGGTATGGCTTAGTCAAGGGATTGCTGGTTTTGGTAAAGGTCATGG 856
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGTGGCGGAGGTCGGGTATGGCTTAGTCAAGGGATTGCTGGTTTTGGTAAAGGTCATGG 596
Query 857 AACAAGAGAAACATGTAATTTGCATACCACGAGGCTCTCTTGTGATACATTAGTGGATTT 916
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AACAAGAGAAACATGTGCTTTGCATACCACGAGGCTCTCTTGTGATACATTAGTGGATTT 656
Query 917 TTGGTCTGCACTTGAAGAGCATAGTCGACAGTCACTTTTGAGAATGAAAGAAGAGGATTT 976
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 657 TTGGTCTGCACTTGAAGAGCAAAGTCGACAGTCACTTTTGAGGATGAAAGAAGAGGATTT 716
Query 977 TGTGGAAAGACTAACTTACAGATTCGACTGCAAGAAGTTTTGTAGAGACTGCCGAAGAAA 1036
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 717 TGTGGAAAGACTAACTTACAGATTCGACTGCAAGAAGTTTTGTAGAGACTGCAGAAGAAA 776
Query 1037 TGTCATTCGGGAGTTTAAAGAACTTAAGGAACTTAAACGAATACAGAGAGATCCAAGATG 1096
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 777 TGTTATTCGGGAGTTTAAAGAACTTAAGGAACTTAAACGAATGCAGAGAGAACCAAGATG 836
Query 1097 TACCGACTGGTTTTGTGTTGCCGATACAGCCTTTCAGTATGAGGTGGACATTGATTCTGT 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 837 TACCGACTGGTTTTGTGTTGCCGATACAGCCTTTCAGTATGAGGTGGACATTGATTCCGT 896
Query 1157 CCGAGCAGATTGGAGTCAATATTTTACAGAGAATGCTGGATATCATCATTTCGAGTGGGC 1216
||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 897 CCGAGCAAATTGGAGTCAACATTTTACAGAGAATGCTGGATATCATCAATTCGAGTGGGC 956
Query 1217 TATTGGAACAGGAGAAGGCGAATCTGATATCCTCGAGTTCAAATATGTAGGCAATGATCG 1276
||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 957 TATTGGAACTGGAGAAGGCGAATCTGATATCCGCGAGTTCAAATACGTAGGCAATGATCG 1016
Query 1277 GAGTGCCCGAGTCAATGGCCTAGACCTTCGTGGATTACATGAATGCTACATTACTCTTAG 1336
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1017 GAGTGCCCAAGTCAATGGCCTAGACCTTCGTGGATTACACGAATGCTACATTACTCTTAG 1076
Query 1337 GGCATTTaaaaaaaaTGGCCGCCCCTCAGAAATATCTGTCAAAGCCCATGCATTGAGAGG 1396
||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1077 GGCTTTTAAAAAAAATGGCCGCTCCTCGGAAATATCTGTCAAAGCCCATGCATTGAGAGG 1136
Query 1397 CCAACAGTGCGTTCACTCCAGGCTTGTGGTTGGGGATGGCTTTGTTTCAATTAAAAGAGG 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CCAACAGTGCGTTCACTCCAGGCTTGTGGTTGGGGATGGCTTTGTTTCAATTAAAAGAGG 1196
Query 1457 GGAATGCATTCGAATGTTTTTTGAGCATGCTGAAGAGGCTGAGGAAGAAGAGGATGAAGT 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGAATGCATTCGAATGTTTTTTGAGCATGCTGAAGAGGCTGAGGAAGAAGAGGATGAAGT 1256
Query 1517 CCTGATAGACAAAGATGGAAATGAACTTGATGGTGAGTGCTTGCGTCCACAAAAGCATGC 1576
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1257 CATGATAGACAAAGATGGAAATGAGCTTGATGGTGAGTGCTTGCGTCCACAAAAGCATGC 1316
Query 1577 TAAGAGTCCAGAACTTGCTCGAGAGTTTCTTCTAGATGCTGCAACGGTTATTTTCAAGGA 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TAAGAGTCCAGAACTTGCTCGAGAGTTTCTTCTAGATGCTGCAACGGTTATTTTCAAGGA 1376
Query 1637 ACAGGTTGAAAAGGCATTTAGGGATGGTACAGCCCGTCAAAATGCACACAGTATATTTGT 1696
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GCAGGTTGAAAAGGCATTTAGGGATGGTACAGCCCGTCAAAATGCACACAGTATATTTGT 1436
Query 1697 CTGCCTTTCATCGGAACTGTTAGAGCAACGTGTTCATATTGCCTGCAAAGAAATTGTTAC 1756
||||||||||||| |||| |||||| |||||||||||||||||||||| |||||||| ||
Sbjct 1437 CTGCCTTTCATCGAAACTATTAGAGAAACGTGTTCATATTGCCTGCAAGGAAATTGTCAC 1496
Query 1757 CTTGgagaagcagaacaaacttctcgaggaagaagagaaagaaaagcgtgaagaagagga 1816
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1497 CTTGGAGAAGCAGAACAAACTTCTTGAGGAAGAAGAGAAAGAAAAGCGTGAAGAAGAGGA 1556
Query 1817 gcgaaaagaaaggaaacgaattaaagaaagggagaaaaaacttcgtagaaaggagagatt 1876
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1557 GCGAAAAGAAAGGAAAAGAAATAAAGAAAAGGAGAAAAAACTTCGTAGAAAGGAGAGATT 1616
Query 1877 gaaggaaaaagaacgcgaaaaagagcagaagaaTCCAAAATTTAGTGATAAAGCAATACT 1936
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GAAGGAAAAAGAACGAGAAAAAGAGCAGAAGAATCCAAAATTTAGTGATAAAGCAATACT 1676
Query 1937 GCCAATTATGTCAAGGGAAGAAGAAGGCTCTCGAAATCTTGATGAGGACACTAACAATAC 1996
||||| ||||||||||||||||||| |||||| ||||||||||||||| | |||||||||
Sbjct 1677 GCCAAATATGTCAAGGGAAGAAGAATGCTCTCCAAATCTTGATGAGGAAAATAACAATAC 1736
Query 1997 CATAAGATGCGAGGAGTCCGGAATTGAAAATGGAGATGTAGATTTGTCTTCACCTGGTTC 2056
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1737 CATAAGATGCGAGGAGTCCGGAATTGAAAATGGAAATGTAGATTTGTCTTCACCTGGTTC 1796
Query 2057 TCCTGATGATCAAGATGAAGAGTGTTTGGATGGTTGCATTTCTCCAAGAGTTGAAACCCA 2116
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1797 TCCTGATGATCAAGATGAAGAGTGTTTGGATGGTTGCGCTTCTCCAAGAGCTGAAACCCA 1856
Query 2117 CTCTTGTGATAGCACTGATAAGGAGATTATAGATCATGAAGATGAAAACGGCTGCTTTAC 2176
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1857 CTCTTGTGATAGCACTGATAGGGAGATTATAGATCATGAAGATGAAAACGGCTGCTTTAC 1916
Query 2177 AC--------C-AAGACCTGCTCATAAGACGGCGAGATTATGGAAAGAGGTTCAGACTGA 2227
|| | ||||||||||||| |||| || |||||||||||||||| |||||||||
Sbjct 1917 ACATGAAAATCCAAGACCTGCTCATCAGACAGCAAGATTATGGAAAGAGGCTCAGACTGA 1976
Query 2228 TCATTCTTTGAGGTTGTCAGAAAAACGCAGATTTACAGAGAAAACTTCTTTTGTCAGTAG 2287
|||| ||||||| | ||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1977 TCATGCTTTGAGATGGTCAGAAAAACGCAGATTTACAGAGAATGCTTCTTCTGTCAGTAG 2036
Query 2288 TTCTGAGGCAGGATACTGTAATGATAGATTAGAAATGTCTTCGGGACACTTCAATGGCTC 2347
| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct 2037 TGCTGAGGCAGGATACTGTAATGATAGATTAGAAATGCCTTCACGACACTTCAATGGGTC 2096
Query 2348 AGATAAAAATGTGAGAGTGAAAGCTTCGAAAGCTGGTGGTAGCCCAAATAGCAGTAGGTC 2407
|||||||||| ||||||||||||||| |||| |||||||||||||| |||||| ||||||
Sbjct 2097 AGATAAAAATTTGAGAGTGAAAGCTTTGAAAACTGGTGGTAGCCCAGATAGCATTAGGTC 2156
Query 2408 TCATGAGGAGTTTCAGTGTTCAGATGGCAGGACTGGTGAGAGGTATGATTACCATTCTTG 2467
|||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||
Sbjct 2157 TCATGAGGAGTTTCAGTGTTCAGACGACAGGACTGGGGAGAGGTATGATCACCATTCTTG 2216
Query 2468 CAGTTGCAAACCCATTAATGGTTACCGGGAAAAGGTAGAGTCTAATAC-ATCTGCAACCA 2526
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 2217 CAGTTGCAAACCCATTAATGGTTACCGGGAAAATGTAGAGTCTAAT-CTATCTGCAACCA 2275
Query 2527 GAGGCATGCGAGAACCGAAATCAGTATTCAAATCTGACTCTGATCTGGATGTCTCCAAGC 2586
|||||||||||||||| ||||||| | | ||||||||||||||||||||||
Sbjct 2276 GAGGCATGCGAGAACCCAAATCAG-A---------G--TCTGATCTGGATGTCTCCAAGC 2323
Query 2587 TTAACCGAGCCAATAGGTATACTCAATCAGGCTATAGACGAGAGATAAGAAGCAAAATGA 2646
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 2324 TTAACCGAGCCAATAGGTATAATCAATCAGGCTATAGACGAGAGATAAGAAGTAAAATGA 2383
Query 2647 ATAATAGTCGAAACGCTTGTAAGATGGATCCAGTAAATGTGAGAAAGGTCTTGGACTCTG 2706
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 2384 ATAACAGTCGAAACGCTTGTAAGATGGATCCAGTAAATGCGAGAAAGGTCTTGGACTCCG 2443
Query 2707 TGGAGCCGAAGCATTCACGAAACAGCTCAACCTCTGACGTATTATCACTTACA-----A- 2760
|||||| ||||||| ||||||||||||||| ||||||||||| |||||||||| |
Sbjct 2444 TGGAGCTGAAGCATCCACGAAACAGCTCAAACTCTGACGTATCATCACTTACATGTTCAA 2503
Query 2761 CATACAAAGCAGAAGAGATTAAAGATGTAAGTCCCACTGTGAAGCCAGCTGGCACACCGT 2820
||||||| |||||||||||| ||||||||||||||| ||||||| ||||| |||||| ||
Sbjct 2504 CATACAAGGCAGAAGAGATTGAAGATGTAAGTCCCATTGTGAAGTCAGCTTGCACACTGT 2563
Query 2821 CTCTATGCAAGGCTACAGATAAGTTGGGAAATGGGAGTTTTAATAATTCGACGGAGGTAG 2880
|||||||||||||||||||||||||||| ||||||| | |||||||||| || |||||||
Sbjct 2564 CTCTATGCAAGGCTACAGATAAGTTGGGTAATGGGAATCTTAATAATTCAACCGAGGTAG 2623
Query 2881 ACAAGAAGATGGAAGTTCACATAACACTGAAGAATGATTACCTGTACTCGAAAGATCCTA 2940
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2624 ACAAGA---TGGAAGTTCACATAACACTGAAGAATGATTACCTGTACTCGAAAGATCCTA 2680
Query 2941 TGATGAGTAGAAGTTCTAGTTC---AAACAATGGAAACATCGAATCCTCCTCGATGTCTG 2997
|||||||||||| ||| | ||| |||||| |||||||| |||||||||||| ||||||
Sbjct 2681 TGATGAGTAGAACTTCCACTTCTTCAAACAACGGAAACATTGAATCCTCCTCGTTGTCTG 2740
Query 2998 ATTCCGAAGTTGCCAGTCAGCAATCTGAAGGAAGAGAGAATCTAGTGGATACTCAGAACG 3057
||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 2741 ATTCCGAAGATGCCAGTCAGCAATCTGAAGGAAGAGAGAATCTAGTGGATA-T--G--C- 2794
Query 3058 ATATGCCCGACTGTCACGAGAAGATGGTAGAGAAAGTGACAGAGATGAGTATGGATGAAA 3117
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2795 -----CC-GACTGTCACGAGAAGATGGTAGAGAAAGTGACAGAGATGAGTATGGATGAAA 2848
Query 3118 GAGATGTTTTAAAGATTAAGAATATATCTAACCTTCCAGCAGACAACGGGGAAAGTAAAT 3177
|||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2849 GAGATGTTTTAAGGATTAAGAATATGTCTAACCTTCCAGCTGACAACGGGGAAAGTAAAT 2908
Query 3178 TATCAGGAACTCCTTTTATGGTTCCTAGCCAAAACATGGAAAATATGGTACCAGGTCTTA 3237
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 2909 TATCAGGAACTCCTTTTGTGGTTCCTAGCCAAAACATGGAAAATATGGTACCTGGTGTTA 2968
Query 3238 ATACTGGTTCCTACCTGTCCCAGCCACAAAACATGATACTCCCCCAGATGCTTAACCAGA 3297
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2969 ATACTGGTTCCTACCTATCCCAGCCACAAAACATGATGTTCCCCCAGATGCTTAACCAGA 3028
Query 3298 GTATACCATTGCCAGTCTTCCAGGCTCCTTCAACAATGGGTTACTATCATCAAGCTCCAG 3357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3029 GTATACCATTGCCAGTCTTCCAGACTCCTTCAACAATGGGTTACTATCATCAAGCTCCAG 3088
Query 3358 TCTCTTGGTCTTCAGCTTCAACCAACGGATTAATGCAATTCCCTCATCCTAACCACTATG 3417
||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||
Sbjct 3089 TCTCTTGGTCTTCAGCTCCAGCCAACGGATTAATGCAATTCCCTCATCCTAACCATTATG 3148
Query 3418 TATACACTGGTCCCCTTGGATACAGTCTGAATGGAGAGTCTCCTTTATGCATGCAGTACG 3477
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3149 TATACACTGGTCCTCTTGGATACAGTCTGAATGGAGAGTCTCCTTTATGCGTGCAGTACG 3208
Query 3478 GGACCCCATTGAACCATTCAGCAGCTCCTTTCTTCAATTCCGGGCCAGTTCCAATTTTCC 3537
|||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 3209 GGACCCCATTGAGCCATTCAGCAGCCCCTTTCTTCAATTCCGGGCCAGTTCCAGTTTTCC 3268
Query 3538 ATCCGTTTGCTGAAACCAACACAATGAACACTGTTGACCAAGCTCAACCTCTTGAGCCAT 3597
|||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 3269 ATCCGTATGCTGAAACCACCACAATGAACACTGTTGACCAAGCTCAAGCTCTTGAGCCAT 3328
Query 3598 TGGAACACAGTTTTTTGAAGGAAGCAAATGAGAGGAGATTTAA-CGAAATGCCTTTAATG 3656
|||||||||||||| ||||||||||||||||||||| | |||| |||||||||| ||||
Sbjct 3329 TGGAACACAGTTTTCTGAAGGAAGCAAATGAGAGGA-AGTTAAACGAAATGCCTCCAATG 3387
Query 3657 GAAACTCCAAGGAAAAGATGTCCACAA-ACTGATAGTGATGAGAACTTCTCCTTGTTCCA 3715
||||||||||||| | || ||| |||| | ||||||||||||||||||||||||||||||
Sbjct 3388 GAAACTCCAAGGAGAGGAGGTCTACAACA-TGATAGTGATGAGAACTTCTCCTTGTTCCA 3446
Query 3716 CTTTGGTGGCCCGGTTGCTCTGTCCACAGGAAGTAAAGCGAATCCTGCTCGATCCAAAGA 3775
||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 3447 CTTTGGTGGCCCGGTTGCTCTGTCCACAGGAAGTAAATCGAATCCTGCTCGTTCGAAAGA 3506
Query 3776 TGGGATTTTGGAGGATTTCTCGTTGCAGTTCTCAGGAGATCATGTTTTTGGTGATCCAAC 3835
||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 3507 TGGGATTTTGGGGGATTTCTCGTTGCAATTCTCAGGAGATCATGTTTTTAGTGATCCAAC 3566
Query 3836 CGGCAATAGCAAGAAGGAGAAAGAGAACACAGTTGGTGAAGAGTACAACTTGTTTGCGAC 3895
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3567 CGGCAATAGCAAGAAGGAGAAGGAGAACACAGTTGGTGAAGAGTACAACTTGTTTGCGAA 3626
Query 3896 AAGTAACAGTTTGAGGTTTTCTATCTTCTAA 3926
|||||||||||||||||||||||||||||||
Sbjct 3627 AAGTAACAGTTTGAGGTTTTCTATCTTCTAA 3657
> Ahg486257 jgi|Araly1|486257|fgenesh2_kg.5__2249__AT3G58050.1
Length=3762
Score = 1227 bits (664), Expect = 0.0
Identities = 1361/1688 (81%), Gaps = 86/1688 (5%)
Strand=Plus/Plus
Query 998 ATTCGACTGCAAGAAG-TTTTGTAGAGACTGCCGAAGAAATGTCATTCGGGAGTTTAAAG 1056
||||||| ||||| || ||||||||||||||| || ||||||| ||||| ||||| ||||
Sbjct 810 ATTCGACAGCAAG-AGATTTTGTAGAGACTGCAGACGAAATGTTATTCGTGAGTTCAAAG 868
Query 1057 AACTTAAGGAACTTAAACGAATACAGAGAGATCCAAGATGTACCGAC-TGGTTTTGTGTT 1115
| ||||||||||| |||||||| | |||||| || |||||||| || ||||||||||||
Sbjct 869 AGCTTAAGGAACTGAAACGAATGCGGAGAGAACCTCGATGTACC-ACATGGTTTTGTGTT 927
Query 1116 GCCGATACAGCCTTTCAGTATGAGGTGGACATTGATTCTGTCCGAGCAGATTGGAGTCAA 1175
|||||||||||||| || |||||||| ||||||||| || |||||| ||| | ||
Sbjct 928 GCCGATACAGCCTTCCAATATGAGGTATCCATTGATTCGGTGAAAGCAGACTGGCGGGAA 987
Query 1176 TA-TTTTACAGAGAATGCTGG-A--TATCATCATTTCGAGTGGGCTATTGGAACAGGAGA 1231
| |||| | ||||||||||| | || |||||||| |||||||| |||||||| |||||
Sbjct 988 -ACTTTTTCTGAGAATGCTGGAATGTACCATCATTTTGAGTGGGCAATTGGAACCGGAGA 1046
Query 1232 AGGCGAATCTGATATCCTCGAG-TTCAAATATGTAGGCAATG-ATCGGAGTGCCCGAGTC 1289
||| ||| |||||||||| || || ||| |||| ||| ||| || |||| | | ||||
Sbjct 1047 AGGAAAATGTGATATCCTCAAGTTTGAAA-ATGTTGGC-ATGAATGGGAGAGTTCAAGTC 1104
Query 1290 AATGGCCTAGACCTTCGTGGATTACATGAATGCTACATTACTCTTAGGGCATT-Taaaaa 1348
|||||||||||||||||||| ||| || ||| |||||||| ||||| || || ||||
Sbjct 1105 AATGGCCTAGACCTTCGTGGTTTAAATTCATGTTACATTACCCTTAGAGC-TTATAAATT 1163
Query 1349 aaaTGGCCGCCCCTCAGAAATATCTGTCAAAGCCCATGCATTGAGAGGCCAACAGTGCGT 1408
| |||||||| || || |||| ||||||||||||||||| | ||| ||| | || ||
Sbjct 1164 AGATGGCCGCTGGTCTGAGGTATCCGTCAAAGCCCATGCATTAAAAGGTCAAAACTGTGT 1223
Query 1409 TCACTCCAGGCTTGTGGTTGGGGATGGCTTTGTTTCAATTAAA-AGAGGGGAATGCATTC 1467
||| ||| || || |||||||||||||||||||||| |||| ||||| ||| |||| |
Sbjct 1224 GCACGGCAGACTAGTAGTTGGGGATGGCTTTGTTTCAA-TAAAGAGAGGTGAAAGCATCC 1282
Query 1468 GAATG-TTTTTTGAGCATGCTGAAGAGGCTGAGGAAGAAGAGGATGAAGTCCTGATAGAC 1526
||| | ||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 1283 GAA-GATTTTTTGAGCATGCTGAAGAGGCTGAGGAAGAAGAGGATGAAGACATGATGGAC 1341
Query 1527 AAAGATGGAAATGAACTTGATGGTGAGTGCTTGCGTCCACAAAAGCATGCTAAGAGTCCA 1586
|||||||| ||||| |||||||| || |||| ||||||||||||||||| || ||||||
Sbjct 1342 AAAGATGGGAATGAGCTTGATGGGGAATGCTCCCGTCCACAAAAGCATGCAAAAAGTCCA 1401
Query 1587 GAACTTGCTCGAGAGTTTCTTCTAGATGCTGCAACGGTTATTTTCAAGGAACAGGTTGAA 1646
|||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 1402 GAACTTGCTCGAGAGTTTCTTCTAGATGCTGCGACAGTTATTTTTAAAGAACAGGTTGAA 1461
Query 1647 AAGGCATTTAGGGATGGTACAGCCCGTCAAAATGCACACAGTATATTTGTCTGCCTTTCA 1706
|| ||||| ||||| || || || || ||||||||||||||||| ||||| || ||| ||
Sbjct 1462 AAAGCATTCAGGGAAGGAACCGCTCGGCAAAATGCACACAGTATCTTTGTATGTCTTACA 1521
Query 1707 TCGGAACTGTTAGAGCAACGTGTTCATATTGCCTGCAAAGAAATTGTTACCTTGgagaag 1766
| | |||| ||||| |||||||| ||| |||||||||| |||||| | |||||||||||
Sbjct 1522 TTGAAACTATTAGAACAACGTGTACATGTTGCCTGCAAGGAAATTATCACCTTGGAGAAA 1581
Query 1767 cagaacaaacttctcgaggaagaagagaaagaaaagcgtgaagaagaggagcgaaaaga- 1825
||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1582 CAGGTGAAACTTCTTGAGGAAGAAGAGAAGGAAAAGCGTGAAGAAGAGGAGCGGAAAGAG 1641
Query 1826 aaggaaacgaatt-aaagaaagggagaaaaaacttcgtagaaaggagagattgaaggaaa 1884
||| ||| || | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1642 AAGAAAA-GA-TCCAAAGAAAGGGAGAAAAAACTTCGCAGAAAGGAGAGATTGAAGGAAA 1699
Query 1885 aagaacgcgaaaaagagcagaagaaTCCAAAATTTAGTGATAAAG-CAATACTGCC-AAT 1942
||||| | || ||| |||| || || ||| ||| ||||||| || | |||| |||
Sbjct 1700 AAGAAAAAGGCAAGGAGAAGAAAAACCCTGAATCTAGCGATAAAGACA-TGCTGCTGAAT 1758
Query 1943 T-ATGTCAAGGGAAGAAGAAGGCTCT-CGAAATCTTGATGAGGACACTAACAATACCATA 2000
| | ||||||||||||||| ||| | || |||||||| | || || |||||||||
Sbjct 1759 TCAC--CAAGGGAAGAAGAAGA-TCTTCCCAACCTTGATGATAAGACAAATAATACCATA 1815
Query 2001 AGA-TGCGAGGAGTCCGGAATTGAAAATGGAGATGTAGATTTGTCTTCACCTGGTTCTCC 2059
| | ||||||||||| | |||||||| || |||| |||||||||| |||||||||||||
Sbjct 1816 A-ACTGCGAGGAGTCAGAAATTGAAACGGGGGATGCAGATTTGTCTCCACCTGGTTCTCC 1874
Query 2060 TGATGATCAAGATGAAGA--GTGTTTGGATGGTTGCATTTCTCCAAGAGTTGAAACCCAC 2117
||||| |||||| |||| |||||||||||||||| ||||||||||| |||| ||||
Sbjct 1875 TGATGTTCAAGA--AAGACAGTGTTTGGATGGTTGCCCTTCTCCAAGAGCGGAAAACCAC 1932
Query 2118 T-CTTGTGATAGCACTGATAAGGAGA-TT-ATAGATCATGAAGATGAAAACGGCTGCTTT 2174
| || |||| ||| |||| | | ||| || | ||||| ||||| ||| ||||| | ||||
Sbjct 1933 TACT-GTGACAGCCCTGACA-G-AGAATTTACAGATCTTGAAGGTGAGAACGGGTACTTT 1989
Query 2175 ACA------C--CAAGAC-CTGCTCATAAGACGGCGAGATTAT-GGAAAGAGGTTCAGAC 2224
||| | ||| | ||| ||| ||| || |||| || ||||||| || ||| |
Sbjct 1990 ACAAATGATCATCAAAAAACTGTTCACCAGAATGCAAGAT-ATTGGAAAGAAGTGCAGTC 2048
Query 2225 TGATCATTCTTTGAGGTTGTCAGAAAAACGCAGAT-TTACAGAGAAAACTTCTTTTGTCA 2283
|||| || ||||||||| |||||| |||||||||| || | || || |||| ||||||
Sbjct 2049 TGATAATGCTTTGAGGTGGTCAGATAAACGCAGATATT-CGGATAATGCTTCGTTTGTCG 2107
Query 2284 GTAGTTCTGAGGCAGGATACTGTAATGATAGATTAGAAATGTCTTC--GGGACACTTCAA 2341
|||| || |||||| ||||| ||||||||||||||||| || |||| ||| | || ||
Sbjct 2108 GTAGGTCAGAGGCAAGATACCGTAATGATAGATTAGAAGTGCCTTCAAGGGG-ATTT-AA 2165
Query 2342 TGGCTCAGATAAAAATGTGA-GAGTGAAAGCTTCGAAAG-CTGGTGGTAGCCCAAATAGC 2399
||| ||| | ||| | || | |||| ||| |||| |||| ||||||| || ||| ||
Sbjct 2166 TGGGTCAAACAAACA-GTTAAGAGTTAAACCTTC-AAAGACTGGTGG---CCTGAATGGC 2220
Query 2400 AGT-AGGTCTCATGAGGAGTTTCAGTGTT-CAGATGGCAGGA-CTGGTGAGAGGTATGA- 2455
| | | |||||||||| ||||||| |||| | || ||||| | | |||||||| |||
Sbjct 2221 A-TCAAGTCTCATGAGAAGTTTCAATGTTGC-GACAACAGGATCAG-TGAGAGGTTTGAC 2277
Query 2456 TTACCATTCTTGCAGTTGCAAACCCATTAATGGTTACCGGG-AAAAGGTAGAGTCTAATA 2514
||| ||||||||||||||||||| | || || ||||||| |||| |||| |||| |
Sbjct 2278 TTAA-ATTCTTGCAGTTGCAAACCGAGTAGTGAATACCGGGCAAAAT-TAGAACCTAACA 2335
Query 2515 -CATCTGCAACCAGAGGCATGCGAGAACCGAAATCAGTATTCAAATCTGACTCTGATC-T 2572
| ||||| |||||| ||||||||||||| ||| |||||| ||| |||||||||| || |
Sbjct 2336 TC-TCTGCTACCAGAAGCATGCGAGAACCAAAAACAGTATCCAATTCTGACTCTGCTCCT 2394
Query 2573 GGATGTCTCCAAGC---T-TAACCGAGCCAATAGGTATACTCAATCAGGCTATAGACGAG 2628
| ||| |||||||| | | ||||| ||| |||||||||||||||| | ||| || |
Sbjct 2395 G-ATGCCTCCAAGCCAGTGTT-CCGAGGCAACAGGTATACTCAATCAGACCATACTCGTG 2452
Query 2629 AGATAAGA 2636
|| |||||
Sbjct 2453 AGTTAAGA 2460
Score = 291 bits (157), Expect = 4e-77
Identities = 291/355 (82%), Gaps = 12/355 (3%)
Strand=Plus/Plus
Query 640 CTGTTCATCGATGGGGAGGTCTCACCACAACAC--GCTCGGGATGTA-TCACTCTTCTTG 696
||||||||| ||||||||||||| |||| |||| | | ||| | | |||| |||||||
Sbjct 362 CTGTTCATCCATGGGGAGGTCTCGCCACGACACGTGAT-GGG-T-CACTCACGCTTCTTG 418
Query 697 ACTGCTTTTTG-ACTGCAAAAACTTTCAAAGGGCTTCAAAATGTCTTTGAAAGTAACCGT 755
| |||| |||| || ||||| || ||||||| ||||||||||| ||||| || || |
Sbjct 419 ATTGCTATTTGTAC-GCAAAGTCTCTCAAAGGACTTCAAAATGTGTTTGACAGCGCCCCT 477
Query 756 GCTCGAGAGAGGGAACGTGAGTTGCTTTATCCTGATGCTTGTGGTGGCGGTGGTCG-GGT 814
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 478 GCTCGAGAAAGGGAACGTGAGTTGCTTTATCCTGATGCTTGTGGTGGTGGAGGTCGAGG- 536
Query 815 ATGGCTTAGTCAAGGGATTGCTGGTTTTGGTAAAGGTCATGGAACAAGAGAAACATGTAA 874
|||| | |||||||| || ||| | | ||||| |||||||||||| |||||||| |||
Sbjct 537 ATGGATAAGTCAAGGAATGGCTAGCTATGGTAGAGGTCATGGAACTAGAGAAACGTGTGC 596
Query 875 TTTGCATACCACGAGGCTCTCTTGTGATACATTAGTGGATTTTTGGTCTGCACTT-GAAG 933
| | ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| | |
Sbjct 597 TCTACATACTGCAAGGCTTTCTTGTGATACATTGGTAGATTTCTGGTCCGCACTCAGC-G 655
Query 934 AGCATAGTCGACAGTCACTTTTGAGAATGAAAGAAGAGGATTTTGTGGAAAGACT 988
|| | | |||||| || |||||||| |||||||||||||||||| ||||||||||
Sbjct 656 AGGAAACTCGACAATCTCTTTTGAGGATGAAAGAAGAGGATTTTATGGAAAGACT 710
Score = 102 bits (55), Expect = 2e-20
Identities = 90/106 (85%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 2960 TTCAAACAATGGAAACATC-GAATCCTCCTCGATGTCTGATTCCGAAGTTGCCAGTCAGC 3018
||||||||| ||||||| | ||||||||||| | |||||||| |||| ||||||||||
Sbjct 2832 TTCAAACAACGGAAACA-CTGAATCCTCCTCCACATCTGATTCTGAAGACGCCAGTCAGC 2890
Query 3019 AATCTGAAGGAAGAGAGAATCTAGT-G--GATACTCAGAACGATAT 3061
|||||||||||||||||| | |||| | | ||| |||||||||||
Sbjct 2891 AATCTGAAGGAAGAGAGAGTATAGTTGTTGGTACACAGAACGATAT 2936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 153181731325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5