BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42040.1 Length=1225 Score E Sequences producing significant alignments: (Bits) Value Ahg483290 jgi|Araly1|483290|fgenesh2_kg.4__2350__AT2G42040.1 1522 0.0 > Ahg483290 jgi|Araly1|483290|fgenesh2_kg.4__2350__AT2G42040.1 Length=1143 Score = 1522 bits (824), Expect = 0.0 Identities = 1039/1134 (92%), Gaps = 49/1134 (4%) Strand=Plus/Plus Query 47 aaaaagagCTCACAACAAGAACAC-A-A-CA-CCACAAAGCCTTCCCCTTTAtttttt-t 101 |||||||||||||||||||||||| | | || ||||||||||||| |||||||||||| Sbjct 21 AAAAAGAGCTCACAACAAGAACACAACACCACCCACAAAGCCTTCTCCTTTATTTTTTCC 80 Query 102 C----CCGTGTAACC-aaaa-aaatcaaaaaGATTACTCTCTCTTTAATATCTGGGTTTA 155 | |||||||||| |||| ||| |||||||||| ||||| |||||||||||||||| Sbjct 81 CAAGTCCGTGTAACCAAAAACAAAAAAAAAAGATTA--CTCTC-TTAATATCTGGGTTTA 137 Query 156 TACTACAGTCCTTCTTTGGTGcaaagatcccaaaaaatcaaaatcgaaagagagaataa- 214 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || Sbjct 138 TACTACAGTCCTTCTTTGGTGCAAAGATCCCAAAAAA-CAAAATCGAAAGACAGAA-AAG 195 Query 215 atcaa-aaggaagaatcTTTATCTGCT-T-TCTCTCGATGAGGATCCGGAAACGACAAGT 271 | || ||||||||||| || |||||| | |||| ||||||||||||||||||||||||| Sbjct 196 A-AAAGAAGGAAGAATC-TT-TCTGCTATATCTCCCGATGAGGATCCGGAAACGACAAGT 252 Query 272 GCCTCTTCCT-TTATCGTCTCTATTACCAGTTCCTCTATCAGATCTCTACTTTAACCGCT 330 |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 GCCTCTTCCTCTT-GCGTCTCTATTACCAGTTCCTCTATCAGATCTCTACTTTAACCGCT 311 Query 331 CACCGACGGCCACCGCGAGATACTTTCGCGGTGGTTATAAAGACGGCGGTGATGATTTTG 390 ||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||| Sbjct 312 CACCGACGGCCACCGCGAGATACTTTCGCGGTGGTTATAGAGACGGAGGTGAAGGTTTTG 371 Query 391 GTTCTCTTCAGCTTTCGCTTCCGCCGCCGTCGCAGATTTCTGATCGGCTTATTCAAAGAG 450 ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| Sbjct 372 GTTCTCTTCAGCTTTCGCTTCCGCCGCCGTCTCCGATTTCTGATCGGCTGATTCAAAGAG 431 Query 451 ATTTGATAAAGAAGAAGGAGGAGGTCAAGGCTTTGGATG---AT-G--ATAATGGTGATG 504 ||||||| ||||||| |||||||| |||||||||||| || | | ||||||||| Sbjct 432 ATTTGAT---GAAGAAGAAGGAGGTCGAGGCTTTGGATGATAATGGTCGTGATGGTGATG 488 Query 505 TAGACGTCAAGAGTCGTACTGATGCATCGGGCAGCAAGAATGTTAATCCCCGAGGAGAAT 564 ||||||| | ||||||||||||||| |||||||||||||||| ||||| ||||||||| | Sbjct 489 TAGACGTGATGAGTCGTACTGATGCTTCGGGCAGCAAGAATGCTAATCTCCGAGGAGAGT 548 Query 565 CCGTCTCTTCAATACAAGTTGTCGAGAAGAATGAAAAGGTTGTGTCTTTGAGGAAGAGAA 624 ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 549 CCGACTCTTCAACACAAGTTGTCGAGAAGAATGAAAAGGTTGCATCTTTGAGGAAGAGAA 608 Query 625 GAGGCTTTATCAACTTTGAGGATTACGAAGATGAGGAAGATGAAGAAGCTAGTGGCGGTG 684 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 GAGGCTTTATAAACTTTGAGGATTACGAAGATGAGGAAGATGAAGAAGCTAGTGGCGGTG 668 Query 685 GAGGCCGTATTAATAAAGGGAAAAAGAAAGCGAAAAAGAGCGGTGGTGGGTTAGAGGAAG 744 |||| || |||||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 669 GAGG-CG--GTAATAAAGGGAAAAAGAAAGGGAAAAAGAACGGTGGTGCGTTAGAGGAAG 725 Query 745 GATCACGGTGCAGCCGTGTTAACGGTAGAGGATGGAGATGTTGTCAGCAAACGCTTGTTG 804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 726 GATCACGGTGCAGCCGTGTTAACGGTAGAGGATGGAGATGTTGTCAGCAAACGCTTGTTG 785 Query 805 GTTATTCTCTTTGTGAGCATCATCTCGGTAAAGGAAGGGTAAGGAGCATGAACAAGAGTG 864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 786 GTTATTCTCTTTGTGAGCATCATCTCGGTAAAGGAAGGGTAAGGAGCATGAACAAGAGTG 845 Query 865 GTGGTGGTCGTGGCGGCGAGAAAAAGGCGGTGGTGGTGGAAGTGAAGAAGAAGAGAGTAA 924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 846 GTGGTGGTCGTGGCGGCGAGAAAAAGGCGGTGGTGGTGGAAGTGAAGAAGAAGAGAGTGA 905 Query 925 AGCTTGGCATGGTAAAGGCACGTTCAATAAGTAGTTTGCTTGGACAAACCAGCACTAGTG 984 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 906 AGCTTGGGATGGTAAAGGCACGTTCGATAAGTAGTTTGCTTGGACAAACCAGCACTAGTG 965 Query 985 GTGGTACTAGTGGTGATGTTGATCAGGGTGAGATAAGTGCACCTGCTGATCAGTTCGCTG 1044 |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 966 GTGGTA---GTGGTGATGTTGA---GGGTGAGATAAGTGCACCTGCTGATCAGTTTGCTG 1019 Query 1045 CATGTGATAAGTAGGTCTGTTGATCAGCATTTGCATGTATATGGATATGTGTATGTTTAT 1104 ||||||||| ||| ||||||||| ||||||||||||||||||| ||||| || | Sbjct 1020 CATGTGATAGGTAAGTCTGTTGACCAGCATTTGCATGTATATGTTTATGTACAT-T---- 1074 Query 1105 GTACATGATGATAATGGGCATAGCTCTATGTATTGGGTGTGTGAACATGTCTAT 1158 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1075 GTACATGATGATAATGGACATAGCTCTATGTATTGGGTGTGTGAACATGT-TAT 1127 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45747500400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5