BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42220.1 Length=967 Score E Sequences producing significant alignments: (Bits) Value Ahg483311 jgi|Araly1|483311|fgenesh2_kg.4__2371__AT2G42220.1 1238 0.0 > Ahg483311 jgi|Araly1|483311|fgenesh2_kg.4__2371__AT2G42220.1 Length=895 Score = 1238 bits (670), Expect = 0.0 Identities = 751/789 (95%), Gaps = 9/789 (1%) Strand=Plus/Plus Query 2 GTGGTTCTTGTCCAAGTAACTATCGCATCAC----AGTGA-CGAGtt-tttttCCTAGAG 55 ||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||| Sbjct 1 GTGGTTCTTGTCCAAGTAACTATCGCATCACAGTGAGTGACCGAGTTCTTTTTCC-AGAG 59 Query 56 ACCTCTGCTGCAATGGCGGGGATCATAAGCCCTAGCCCTACGGCTCTTTATTTCACCAGT 115 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 ACCTCTGCAGCGATGGCGGGGATCATAAGCCCTAGCCCTACGGCTCTTTATTTCACCAGT 119 Query 116 AATGTCGGTGGGAGGCGACTGAAAGCAGTGAGCTGGGCGGGAAAGAGTGTCTCCGGGAAC 175 |||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||| Sbjct 120 AATGTCGGCGGGAGGCGGTTGAAAGCGGTGAGCTGGGCGGGGAAGAGTGTCTCCGGGAAC 179 Query 176 GTTATCCGCCGGAGAAGCTTGAGAATTGCTGCGG-AGCTGAAATTCGTGAATGCAGAAGA 234 | ||||||||||||| |||||| ||||| |||| || |||||||||||||||||||||| Sbjct 180 GCAATCCGCCGGAGAAACTTGAGGATTGCGGCGGAAG-TGAAATTCGTGAATGCAGAAGA 238 Query 235 AGCAAAACAGTTAATAGCTGAAGAAGGTTACTCGGTGGTGGATGTAAGAGACAAGACTCA 294 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AGCAAAGCAGTTAATAGCTGAAGAAGGTTACTCGGTGGTGGATGTAAGAGACAAGACTCA 298 Query 295 ATTCGAGAGAGCTCATATAAAATCTTGCTCCCATATTCCTCTCTTCATTTACAACGAAGA 354 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 299 GTTCGAGAGAGCTCATATCAAATCTTGCTCCCATATCCCTCTCTTCATTTACAACGAAGA 358 Query 355 CAACGATATTGGCACGATCATAAAGAGGACAGTGCACAACAATTTCTCAGGGCTCTTCTT 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CAACGATATTGGCACGATCATAAAGAGGACAGTGCACAACAATTTCTCAGGGCTCTTCTT 418 Query 415 TGGTTTACCTTTCACGAAAGTGAATCCGGAATTTCTTAAATCTGTTAGAAACGAGTTTTC 474 |||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| Sbjct 419 TGGTTTGCCTTTCACGAAAGTGAATCCGGACTTCCTTAAATCCGTTAGAAACGAGTTTTC 478 Query 475 TCAAGACAGCAAACTTTTACTTGTTTGCCAAGAAGGTCTCAGATCTGCAGCTGCAGCTAG 534 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TCAAGACCGCAAACTTTTACTTGTTTGCCAAGAAGGTCTCAGATCTGCAGCTGCAGCTAG 538 Query 535 TAGATTGGAGGAAGCAGGTTACGAAAACATTGCTTGTGTAACATCAGGGCTACAATCTGT 594 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 539 TAGATTGGAGGAAGCAGGTTACGAAAACATCGCTTGTGTAACGTCAGGGCTACAATCTGT 598 Query 595 AAAACCAGGGACATTTGAATCCGTCGGTTCCACTGAGTTGCAGAATGCAGGCAAAGCAGG 654 ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct 599 AAAACCAGGGACATTTGAATCGGTTGGTTCCACCGAGTTGCAGAATGCAGGCAAAGCAGG 658 Query 655 GCTTATCACAATTCAAGGCAAGATCTCAGCAGTCTTAGGGACAGTACTCGTCTGTGCTTA 714 ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 659 GCTTATCACAATTCAAGGCAAGATCTCAGCAGTCTTAGGAACAGTGCTCGTGTGTGCTTA 718 Query 715 TTTGTTCATACAGTTCTTCCCGGACCAAGCAGAGAAGCTCTTTCCTCCAACAAGCTAAGA 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTTGTTCATACAGTTCTTCCCGGACCAAGCAGAGAAGCTCTTTCCTCCAACAAGCTAAGA 778 Query 775 CAAGACAAA 783 ||||||||| Sbjct 779 CAAGACAAA 787 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35911787814 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5