BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42500.1 Length=1565 Score E Sequences producing significant alignments: (Bits) Value Ahg935133 jgi|Araly1|935133|scaffold_403121.1 1905 0.0 Ahg486299 jgi|Araly1|486299|fgenesh2_kg.5__2291__AT3G58500.1 1371 0.0 > Ahg935133 jgi|Araly1|935133|scaffold_403121.1 Length=1100 Score = 1905 bits (1031), Expect = 0.0 Identities = 1078/1100 (98%), Gaps = 5/1100 (0%) Strand=Plus/Plus Query 81 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGACTTCCCCTAATTTGGAAACCTAG 140 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGGCTTCCCCTAATTTGGAAACCTAG 60 Query 141 TCCTGTTTCCTGATCTGTTTTCCGGATCGGAC-----GAGAGACGAATTAACGAAAATGG 195 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 61 TCCTGTTTCCTGATCTGTTTTCCGGATCGGACGAGAGGAGAGACGAAGTAACGAAAATGG 120 Query 196 GCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCAGATCTCGCAGCTCA 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 121 GCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCAGATCTCGCAGCTTA 180 Query 256 TGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGAGAAAGCCAAGGAGA 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGAGAAAGCCAAGGAGA 240 Query 316 TCTTAATGGATGAAAGCAATGTTCAGCCTGTGAAAAGCCCTGTGACAATCTGCGGTGATA 375 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCTTAATGGATGAAAGCAACGTTCAGCCTGTGAAAAGCCCTGTGACAATCTGCGGTGATA 300 Query 376 TTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATAGGGGGAATGTGCCCTGATA 435 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 301 TTCATGGACAGTTCCATGATCTTGCTGAGCTTTTCCGTATAGGGGGAATGTGCCCTGATA 360 Query 436 CCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTA 495 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 361 CCAATTATCTGTTTATGGGAGACTATGTGGACCGCGGTTATTATTCTGTTGAAACTGTTA 420 Query 496 CGCTGTTAGTCGCCTTAAAGATGCGATATCCTCAGCGAATCACTATTCTTAGAGGAAACC 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CGCTGTTAGTCGCCTTAAAGATGCGATATCCTCAGCGAATCACTATTCTTAGAGGAAACC 480 Query 556 ATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTACGAAAGTACG 615 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 481 ATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTGCGAAAGTACG 540 Query 616 GCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATTTTCCTCTGACAGCCT 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATTTTCCTCTGACAGCCT 600 Query 676 TGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCATCTATCGAGACCCTTG 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCATCTATCGAGACCCTTG 660 Query 736 ACAACATAAGGAATTTTGATCGAGTTCAAGAAGTGCCCCATGAAGGGCCGATGTGTGACT 795 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 661 ACAACATAAGGAATTTTGATCGAGTTCAAGAAGTTCCCCATGAAGGGCCAATGTGTGACT 720 Query 796 TATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTCCTCGGGGTGCCGGAT 855 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 721 TATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTCCTCGAGGTGCCGGAT 780 Query 856 ATACATTTGGTCAGGATATATCTGAACAATTCAATCACACAAACAACTTAAAGCTGATCG 915 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 781 ATACGTTTGGTCAGGATATATCCGAACAATTCAATCACACAAACAACTTAAAGCTGATCG 840 Query 916 CCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACGAGCAAAAAGTGGTTA 975 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACGAGCAAAAAGTGGTTA 900 Query 976 CTATTTTCAGTGCACCAAACTATTGTTACCGTTGTGGGAACATGGCCTCGATTCTTGAGG 1035 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 901 CTATTTTCAGTGCACCAAACTATTGTTATCGTTGTGGGAACATGGCCTCGATTCTTGAGG 960 Query 1036 TCGACGACTGCAGGAACCACACCTTCATCCAGTTTGAACCAGCACCGAGGAGAGGAGAAC 1095 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 961 TCGACGACTGCAGGAACCACACCTTCATTCAGTTTGAACCAGCACCGAGGAGAGGAGAAC 1020 Query 1096 CAGACGTCACCCGAAGGACTCCAGACTATTTCCTGTGATCACTGGACACAGACTCATCTC 1155 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1021 CAGATGTCACCCGAAGGACTCCAGACTATTTTCTGTGATCACTGGACACAGACTCATCTC 1080 Query 1156 AATCAGCAGCTGCAGGCACC 1175 |||||||||||||||||||| Sbjct 1081 AATCAGCAGCTGCAGGCACC 1100 > Ahg486299 jgi|Araly1|486299|fgenesh2_kg.5__2291__AT3G58500.1 Length=1359 Score = 1371 bits (742), Expect = 0.0 Identities = 973/1082 (90%), Gaps = 26/1082 (2%) Strand=Plus/Plus Query 73 AAAAAGGCGAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGACTTCCCCTAATTTGG 132 ||||| |||||||||||||||| ||||||||||||||||||||| || |||||||| ||| Sbjct 1 AAAAA-GCGAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGG 59 Query 133 AAACCTAG-TCCT-GTTTCCTGATCTGTTTTCCGGAT-CG----G-ACG--AG-AGACGA 181 ||||| | |||| || | ||||||||||| |||||| || | | | || |||||| Sbjct 60 TAACCT-GTTCCTCGTCT-CTGATCTGTTTCCCGGATCCGACTAGAAGGAAAGAAGACGA 117 Query 182 ------ATTAAC-GAAA-ATGGGCGCGAATTCTATTCCGACGGACGCAACCATTGATCTT 233 | || | ||| |||||||||||||| |||||||||| |||||| | ||||| Sbjct 118 CGTCGCACTACCAAAAAGATGGGCGCGAATTCGCTTCCGACGGATGCAACCCTCGATCTA 177 Query 234 GATGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCA 293 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 178 GATGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCA 237 Query 294 TTATGCGAGAAAGCCAAGGAGATCTTAATGGATGAAAGCAATGTTCAGCCTGTGAAAAGC 353 ||||| |||||||| ||||||||||| |||||||||||||| |||||||| || |||||| Sbjct 238 TTATGTGAGAAAGCTAAGGAGATCTTGATGGATGAAAGCAACGTTCAGCCGGTTAAAAGC 297 Query 354 CCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGT 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 CCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGT 357 Query 414 ATAGGGGGAATGTGCCCTGATACCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGT 473 |||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 358 ATAGGGGGAAAGTGCCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGA 417 Query 474 TATTATTCTGTTGAAACTGTTACGCTGTTAGTCGCCTT-AAAGATGCGATATCCTCAGCG 532 ||||||||||| ||||||||||||||||| || | ||| |||| | || ||||| ||||| Sbjct 418 TATTATTCTGTCGAAACTGTTACGCTGTTGGTTGGCTTGAAAG-TACGGTATCCACAGCG 476 Query 533 AATCACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTA 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 AATCACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTA 536 Query 593 TGATGAATGTCTACGAAAGTACGGCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTT 652 |||||||||||| |||||||| ||||| |||||||||||||| || |||||||||||||| Sbjct 537 TGATGAATGTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTT 596 Query 653 CGACTATTTTCCTCTGACAGCCTTGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATT 712 ||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct 597 TGACTATTTTCCACTGACAGCCTTGGTGGAGTCAGAAATATTCTGCCTTCACGGTGGATT 656 Query 713 ATCTCCATCTATCGAGACCCTTGACAACATAAGGAATTTTGATCGAGTTCAAGAAGTGCC 772 ||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 657 ATCACCATCAATCGAGACCCTTGACAACATTAGGAACTTTGATCGAGTTCAAGAAGTTCC 716 Query 773 CCATGAAGGGCCGATGTGTGACTTATTATGGTCTGACCCCGATGACCGATGTGGTTGGGG 832 ||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||| Sbjct 717 GCATGAAGGGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGTTGGGG 776 Query 833 CATCTCTCCTCGGGGTGCCGGATATACATTTGGTCAGGATATATCTGAACAATTCAATCA 892 ||||||||||| |||||||||||||||||||||||||| || || |||||||||||||| Sbjct 777 AATCTCTCCTCGTGGTGCCGGATATACATTTGGTCAGGACATTTCCGAACAATTCAATCA 836 Query 893 CACAAACAACTTAAAGCTGATCGCCCGAGCTCACCAG-TTGGTTATGGATGGATACAACT 951 ||| |||||||||||||||||||||||||| || ||| ||| |||||||||||| ||||| Sbjct 837 CACTAACAACTTAAAGCTGATCGCCCGAGCGCATCAGCTTG-TTATGGATGGATTCAACT 895 Query 952 GGGCTCACGAGCAAAAAGTGGTTACTATTTTCAGTGCACCAAACTATTGTTACCGTTGTG 1011 |||| ||||||||||| ||||||||||| |||||||||||||||||||| || || |||| Sbjct 896 GGGCCCACGAGCAAAAGGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTG 955 Query 1012 GGAACATGGCCTCGATTCTTGAGGTCGACGACTGCAGGAACCACACCTTCATCCAGTTTG 1071 | ||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 956 GAAACATGGCCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTG 1015 Query 1072 AACCAGCACCGAGGAGAGGAGAACCAGACGTCACCCGAAGGACTCCAGACTATTTCCTGT 1131 |||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||| | Sbjct 1016 AACCAGCACCGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTAT 1075 Query 1132 GA 1133 || Sbjct 1076 GA 1077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58620887055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5