BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42540.2 Length=755 Score E Sequences producing significant alignments: (Bits) Value Ahg902253 jgi|Araly1|902253|Al_scaffold_0004_2903 604 2e-172 Ahg483346 jgi|Araly1|483346|fgenesh2_kg.4__2406__AT2G42530.1 440 6e-123 > Ahg902253 jgi|Araly1|902253|Al_scaffold_0004_2903 Length=420 Score = 604 bits (327), Expect = 2e-172 Identities = 391/422 (93%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 127 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCACTGGTATGGCTTCTTCTTTCCACAGCGGA 186 ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 1 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAGCGGA 60 Query 187 GCCAAGCAGAGCAGCT-TCGGCGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTCGT 245 |||||||||| | | | | || |||||||||||||||||||||||||||||||||||||| Sbjct 61 GCCAAGCAGA-CCGGTATTGGGGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTCGT 119 Query 246 TTCTCAACGCAAGAAGTCGTTGATCTACGCCGCTAAAGGTGACGGCAACATCCTCGATGA 305 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 120 TTCTCAGCGCAAGAAGTCGTTGATCTACGCCGCTAAAAGTGACGGCAACATCCTCGATGA 179 Query 306 CCTCAACGAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAGGCATT 365 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 180 CCTCAACCAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAAGCGTT 239 Query 366 AGCAGATGGTGAGAAAGCGAAAG-ACTACGTTGTTGaaaaaaaCAGTGAAACCGCAGATA 424 |||||||| |||||||| |||| |||||||||||||||||| |||||||| |||||||| Sbjct 240 GGCAGATGGCGAGAAAGC-AAAGGACTACGTTGTTGAAAAAACCAGTGAAAACGCAGATA 298 Query 425 CATTGGGTAAAGAAGCTGAGAAAGCTGCGGCGTATGTGGAGGAGAAAGGAAAAGAAGCCG 484 |||||||||||||||||||||||||| ||| ||| | ||| ||||||||||||||||| | Sbjct 299 CATTGGGTAAAGAAGCTGAGAAAGCTTCGGAGTACGCGGATGAGAAAGGAAAAGAAGCTG 358 Query 485 CAAACAAGGCGGCAGAGTTCGCGGAGGGTAAAGCAGGAGAGGCTAAGGATGCCACAAAGT 544 | |||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 359 CGAACAAGGCCGCTGAGTTCGCAGAGGGTAAAGCAGGAGACGCTAAGGATGCCACAAAGT 418 Query 545 AG 546 || Sbjct 419 AG 420 > Ahg483346 jgi|Araly1|483346|fgenesh2_kg.4__2406__AT2G42530.1 Length=530 Score = 440 bits (238), Expect = 6e-123 Identities = 367/428 (86%), Gaps = 13/428 (3%) Strand=Plus/Plus Query 124 CTCATGGCGATGTCTTTCTCAGGAGCTGTTCTCACTGGTATGGCTTCTTCTTTCCAC-A- 181 ||||||||||||||||| ||||| |||||||||| ||| |||| ||||||||||||| | Sbjct 1 CTCATGGCGATGTCTTTATCAGGTGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAAC 60 Query 182 G-CGGAGCCAAGCAGAGCAGC-TTCGGCGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGT 239 | |||||||||||||||||| || || || ||| |||| |||| ||| | | ||||||| Sbjct 61 GTAGGAGCCAAGCAGAGCAGCGTT-GGTGCCGTCGGAGTTGGCCGGAAGAGTGAGTTCGT 119 Query 240 CGTCGTTTCTCAACGCAAGAAGTCGTTGATCTACGCCGCTAAAGGTGACGGCAACATCCT 299 ||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 120 CGTCGTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAGGTGACGGCAACATCCT 179 Query 300 CGATGACCTCAACGAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGA 359 ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || Sbjct 180 CGATGACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACAAAGGA 239 Query 360 GGCATTAGCAGATGGTGAGAAAGCGAAAGACTACGTTGTTGaaaaaaaCAGTGAAACCGC 419 ||| || || |||||||||||| | ||||| ||| ||||||| |||| || |||| || Sbjct 240 GGCGTTGGCGGATGGTGAGAAAACAAAAGAGTACATTGTTGAGAAAACCATTGAAGCCA- 298 Query 420 A-GATACATTGGG--TAAAGAAGCTGAGAAAGCTGCGGCGTATGTGGA-GGAGAAAGGAA 475 | || || | | | | | |||||| |||||||| || |||||| | ||||||||||| Sbjct 299 ATGAAAC-T-GCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTG-ACGGAGAAAGGAA 355 Query 476 AAGAAGCCGCAAACAAGGCGGCAGAGTTCGCGGAGGGTAAAGCAGGAGAGGCTAAGGATG 535 |||| |||| |||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 356 AAGATGCCGGAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGGAGAGGCTAAGGATG 415 Query 536 CCACAAAG 543 |||||||| Sbjct 416 CCACAAAG 423 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829729410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5