BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42590.3 Length=1332 Score E Sequences producing significant alignments: (Bits) Value Ahg483355 jgi|Araly1|483355|fgenesh2_kg.4__2415__AT2G42590.2 1432 0.0 > Ahg483355 jgi|Araly1|483355|fgenesh2_kg.4__2415__AT2G42590.2 Length=1152 Score = 1432 bits (775), Expect = 0.0 Identities = 913/977 (93%), Gaps = 19/977 (2%) Strand=Plus/Plus Query 19 AACCCGCGTTAATTACGCTTGTGTCCCTACGCGCGTCTCAAAGATCTCTCTCT-TCTCTG 77 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1 AACCCGCGTTAATTACGCTTGTGTCCCTACGCGCGTCTCAAAGATCTCTCTCTGTGTCTG 60 Query 78 GAGaaaaaataaaacaaaaGAACAGCGTTCGCCGAGAGATATACATACTCGGATCAGTCG 137 ||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 61 GAG-AAAAA-AAAACAAAAGAAGAGCGTTCGTCGAGAGATATACATACTCGGATCAGTCG 118 Query 138 TCAAAAGCTTTGGAA--TTT-GATACTTTTGATTTTTCGAGAATCTTG-AAAATCAGTCA 193 |||||| | | || ||| || | ||||| | | | ||||||| ||||||||||| Sbjct 119 TCAAAA-C-TCAAAAGCTTTGGA-A--TTTGA---TACTA-AATCTTGAAAAATCAGTCA 169 Query 194 TGGGTTCTGGAAAAGAGCGTGACACTTTCGTCTACCTCGCTAAGCTCTCTGAGCAAGCTG 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 TGGGTTCTGGAAAAGAGCGTGACACTTTCGTCTACCTCGCTAAGCTCTCTGAGCAAGCTG 229 Query 254 AGCGTTATGAAGAAATGGTGGAATCAATGAAAAGTGTTGCGAAATTGAATGTTGATCTGA 313 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 230 AGCGCTATGAAGAAATGGTGGAATCAATGAAAAATGTTGCGAAATTGAATGTTGATCTGA 289 Query 314 CGGTGGAAGAGAGGAACTTACTCTCTGTGGGTTACAAGAACGTGATTGGTTCAAGGAGAG 373 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 290 CGGTGGAAGAGAGGAATTTGCTCTCTGTGGGATACAAGAACGTGATTGGTTCAAGGAGAG 349 Query 374 CTTCGTGGAGGATCTTCTCGTCGATTGAACA-AAAGGAAGCAGTGAAAGGGAATGATGTT 432 |||| |||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||| Sbjct 350 CTTCCTGGAGGATATTCTCGTCGATCGAACAGAAAG-AAGCAGTGAAAGGGAATGATGTT 408 Query 433 AATGTAAAGAGGATCAAAGAGTATATGGAGAAGGTTGAGTTAGAGCTTTCTAACATATGC 492 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 409 AATGTAAAGAGGATCAAAGAGTATATGGAGAAGGTTGAGTTGGAGCTTTCAAACATATGC 468 Query 493 ATTGATATTATGTCTGTCTTAGATGAGCATCTCATTCCTTCGGCTTCCGAGGGTGAATCT 552 |||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||| Sbjct 469 ATTGATATAATGTCTGTGTTAGATGAGCATCTGATTCCATCGGCTTCCGAGGGTGAATCA 528 Query 553 ACTGTCTTCTTCAACAAGATGAAAGGTGACTATTACCGCTATCTTGCTGAGTTCAAATCA 612 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 529 ACTGTCTTCTTCAACAAGATGAAAGGTGACTATTACCGCTATCTTGCGGAGTTCAAATCA 588 Query 613 GGGAACGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAGATTGCTACTACT 672 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 GGGAATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAGATTGCTACTACT 648 Query 673 GCTGCTGAGGCTAAGCTCCCTCCAACACACCCTATCAGATTGGGTTTGGCTTTGAATTTC 732 |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| | Sbjct 649 GCTGCTGAGGCTAAACTCCCTCCTACACATCCTATCAGATTGGGTTTGGCTTTGAATTAC 708 Query 733 TCTGTCTTCTACTACGAGATCATGAACGCACCTGAAAGGGCATGTCACCTTGCTAAGCAG 792 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 709 TCTGTCTTCTACTATGAGATCATGAACGCACCTGAAAGGGCATGTCACCTTGCGAAGCAG 768 Query 793 GCGTTCGATGAAGCTATCTCAGAGCTTGACACTCTGAACGAGGAATCCTACAAAGATAGC 852 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 769 GCGTTCGATGAAGCTATCTCAGAGCTTGACACTCTGAATGAGGAATCCTACAAAGACAGC 828 Query 853 ACCTTAATAATGCAACTCCTTAGGGACAATCTGACCTTGTGGACTTCTGACATCTCAGAA 912 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 829 ACCTTAATTATGCAACTCCTCAGGGACAATCTGACCTTGTGGACTTCTGACATCCCAGAA 888 Query 913 GAAGGAGGAGACGATGCTCATAAGACGAATGGTTCTGCCAAACCTGGTGCTGGTGGAGAC 972 ||||||| ||| ||||| |||||||| ||||||||| ||||| ||||||| |||||||| Sbjct 889 GAAGGAGCAGATGATGCCCATAAGACAAATGGTTCTTCCAAAGCTGGTGCAGGTGGAGAT 948 Query 973 GATGCAGAGGTAA-GTA 988 ||||| ||||||| ||| Sbjct 949 GATGCTGAGGTAAAGTA 965 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49826652519 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5