BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42620.1
Length=2329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935148 jgi|Araly1|935148|scaffold_403136.1 3291 0.0
Ahg922450 jgi|Araly1|922450|scaffold_103731.1 457 2e-127
Ahg944174 jgi|Araly1|944174|scaffold_700403.1 335 1e-90
Ahg946057 jgi|Araly1|946057|scaffold_702286.1 329 5e-89
> Ahg935148 jgi|Araly1|935148|scaffold_403136.1
Length=2125
Score = 3291 bits (1782), Expect = 0.0
Identities = 2017/2131 (95%), Gaps = 14/2131 (1%)
Strand=Plus/Plus
Query 11 TTGTAGATTTGCCGCTTCTCATGG---CTT---CCACTACTCTCTCCGACCTCCCTGACG 64
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1 TTGTAGATTTGCCGCTTCTCATGGCTTCTTCCACCACTACTCTCTCCGACCTCCCTGACG 60
Query 65 TCATCTTATCCACCATTTCCTCTCTCGTATCCGATTCCCGAGctcgcaactctctctccc 124
|||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 61 TCATCTTATCCACCATTTTCTCTCTCGTCTCCGATTCTCGAGCTCGCAACTCTCTCTCCC 120
Query 125 tcgtctctcacaaattcctcgctctcgaacgatccactcgctctcacctcacTATCCGTG 184
||||||| |||||||||||||| |||||| ||||||||||||||| |||||| ||||||
Sbjct 121 TCGTCTCCCACAAATTCCTCGCCCTCGAAAGATCCACTCGCTCTCTCCTCACCCTCCGTG 180
Query 185 GCAACGCTCGTGATCTCTCCCTCGTCCCCGACTGTTTCCGATCAATCTCACATCTCGATC 244
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GCAACGCTCGTGATCTCTCTCTCGTCCCCGGCTGTTTCCGATCAATCTCACATCTCGATC 240
Query 245 TCTCTTTCCTCTCCCCATGGGGTCACACTCTTCTCGCTTCTCTCCCAATCGATCACCAGA 304
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 TCTCTTTCCTCTCTCCATGGGGTCACACTCTTCTCGCTTCTCTCCCTATCGATCACCAGA 300
Query 305 ACCTTCTCGCTCTCCGTCTCAAATTCTGTTTCCCTTTCGTCGAGTCTCTAAACGTCTACA 364
||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||
Sbjct 301 ACCTTCTCGCTCTCCGTCTCAAAATCTGTTTCCCTTCCGTCGTCTCTCTCAACGTCTACT 360
Query 365 CACGATCTCCGAGCTCTCTCGAGCTTCTACTTCCTCAATGGCCGAGAATTCGCCACATCA 424
| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 361 CTCGATCTCCGAGCTCTCTCGAGCTTTTACTTCCTCAATGGCCGAGAATTCGTCACATCA 420
Query 425 AGCTCCTCCGATGGCATCAACGAGCTTCTCAGATCCCTACCGGTGGCGATTTTGTTCCTA 484
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 421 AGCTCCTCCGATGGCATCAACGAGCTTCTCAGATCCCTATAGGTGGTGATTTTGCTCCTA 480
Query 485 TTTTTGAACACTGTGGTGGTTTCCTTGAGTCTTTAGATCTCTCCAACTTCTATCACTGGA 544
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 TTTTTGAACACTGTGGTGGTTTCCTTGAGTCTTTAGATCTCTCTGCCTTCTATCACTGGA 540
Query 545 CTGAAGACTTACCTCCTGTGCTTCTCCGCTATGCTGACGTGGCGGCGAGGCTTACACGGT 604
||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 541 CTGAAGATTTACCTCCGGTTCTTCTCCGGTATGCTGACGTGGCGGCGAGGCTTACACGGT 600
Query 605 TAGATCTCTTGACGGCGTCGTTCACCGAGGGATACAAATCAAGCGAAATCGTTAGTATCA 664
| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 601 TGGATCTCTTGACGGCGTCTTTCACCGAAGGATACAAATCAAGCGAAATCGTCAGTATCA 660
Query 665 CCAAATCTTGCCCTAATTTGAA-GACTTTTCGTGTAGCTTGTACGTTTGATCCGAGATAC 723
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 661 CTAAATCTTGCCCTAATTTGAAGGA-TTTTCGTGTAGCTTGTACGTTTGATCCGAGATAC 719
Query 724 TTTGAATTCGTCGGAGACGAGACTCTCTCCGCCGTAGCTACCAGTTCCCCTAAGTTAACG 783
||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||
Sbjct 720 TTTGAATTCGTCGGAGATGAGACTCTCTCCGCTGTAGCTACCAATTGCCCTAAGTTAACG 779
Query 784 CTTCTACACATGGTGGACACAGCTTCGTTGGCGAATCCTAGAGCTATTCCAGGTACGGAA 843
| ||| || ||||| ||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 780 CCTCTCCATATGGTAGACACAGCTTCGTTGGCGAATCCTAGAGCAATTCCAGGTATGGAA 839
Query 844 GCTGGAGATTCAGCTGTCACGGCGGGGACGCTAATTGAAGTTTTCTCAGGTTTACCGAAT 903
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 840 GCTGGAGATTCAGCGGTCACGGCAGGGACGCTAATTGAGGTTTTCTCAGGTTTACCGAAT 899
Query 904 CTAGAGGAGCTGGTTCTTGACGTAGGAAAGGATGTGAAGCATAGTGGTGTAGCTTTAGAG 963
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 900 CTAGAGGAGCTGGTTCTTGATGTAGGGAAGGATGTGAAGCATAGTGGTGTAGCTTTAGAG 959
Query 964 GCATTGAATTCTAAATGCAAGAAGTTAAGAGTATTGAAGCTAGGACAGTTCCAAGGTGTT 1023
|||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 960 GCATTGAATTCTAAATGCAAGAAGCTACGAGCCTTGAAGCTAGGACAGTTCCAAGGTGTT 1019
Query 1024 TGCTCTGCTACAGAATGGAGGAGGCTCGACGGTGTGGCTTTATGTGGAGGATTGCAGTCG 1083
|||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 1020 TGCTCTGCTACAGAGTGGAGGAGGTTCGACGGCGTGGCTTTATGTGGAGGACTGCAGTCG 1079
Query 1084 TTGTCGATTAAGAATTCCGGCGATTTGACTGATATGGGTTTGGTGGCTATAGGGAGAGGA 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTGTCGATTAAGAATTCCGGCGATTTGACTGATATGGGTTTGGTGGCTATAGGGAGAGGA 1139
Query 1144 TGTTGTAAGTTGACTACGTTTGAGATTCAAGGGTGTGAGAATGTAACAGTGGATGGACTA 1203
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 TGTTGTAAGTTGACTAAGTTTGAGATTCAAGGGTGTGAGAATGTAACAGTGAATGGACTA 1199
Query 1204 AGAACAATGGTTAGTCTTCGGAGTAAGACTTTGACTGATGTGAGAATCTCTTGCTGCAAG 1263
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1200 AGAACAATGGTTAGTCTTCGGAGAAAAACTTTGACTGATGTGAGAATCTCTTGCTGCAAG 1259
Query 1264 AATCTTGACACAGCTGCTTCTTTAAAGGCAATTGAGCCGATTTGTGATCGGATCAAGAGA 1323
|||||||| || | |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1260 AATCTTGATGCAACCGCTTCTTTAAAGGCGGTTGAGCCGATTTGTGATCGGATCAAGAAA 1319
Query 1324 CTGCATATAGACTGTGTGTGGTCTGGTTCAGAGGACGAGGAGGTAGAAGGAAGAGTGGAA 1383
|||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 1320 CTGCATATAGACTGTGTGTGGTCTGGTTCAGA-G--GAGGAGGTAGAAGAAAGAGTGGAA 1376
Query 1384 ACTAGTGAGGCTGACCACGAA-GAGGAGGATGATGGTTACGAGAGGAGCCAGAAGAGGTG 1442
||||| ||| || ||||| || || || ||||||| || ||||||||| | |||||||||
Sbjct 1377 ACTAGCGAGACTAACCAC-AAGGATGATGATGATGATTGCGAGAGGAGTCTGAAGAGGTG 1435
Query 1443 CAAGTATTCATTCGAGGAAGAACACTGCTCAACTAGTGATGTGAATGGATTCTGTTCTGA 1502
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1436 CAAGTATTCATTGGAGGAAGAACACTGCTCAACTAGTGATGGGAATGGATTCTGTTCTGA 1495
Query 1503 AGATAGAGTATGGGAGAAACTGGAGTATCTATCTTTATGGATCAATGTTGGAGAATTTTT 1562
||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 1496 AGACAGAGTATGGGAGAAACTGGAGTATCTGTCTTTATGGATCAGTGTTGGAGAATTTCT 1555
Query 1563 GACGCCATTACCTATGACAGGACTAGATGACTGTCCGAATTTGGAAGAGATTAGGATCAA 1622
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1556 GACGCCATTACCTATGACAGGACTAGATGACTGTCCAAATTTGGAAGAGATTAGGATCAA 1615
Query 1623 GATAGAAGGAGATTGCAGAGGTAAACGCAGGCCAGCCGAGCCAGAGTTTGGGTTAAGTTG 1682
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1616 GATAGAAGGAGATTGCAGAGGTAAACGCAGGCCAGCCGAGCCAGAGTTCGGGTTAAGCTG 1675
Query 1683 TCTCGCTCTCTACCCAAAGCTCTCAAAGATGCAGTTAGATTGCGGGGACACAATCGGTTT 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1676 TCTCGCTCTCTACCCAAAGCTCTCAAAGATGCAGTTAGATTGCGGGGACACAATCGGCTT 1735
Query 1743 CGCACTGACCGCACCGCCAATGCAGATGGATTTGAGTTTATGGGAAAGATTCTTCTTGAC 1802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 CGCACTGACCGCACCTCCAATGCAGATGGATTTGAGTTTATGGGAAAGATTCTTCTTGAC 1795
Query 1803 CGGAATTGGAAGCTTGAGCTTGAGCGAGCTTGATTATTGGCCACCACAGGATAGAGATGT 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1796 CGGAATTGGAAGCTTGAGCTTGAGCGAGCTTGATTATTGGCCACCACAGGATAGAGACGT 1855
Query 1863 TAACCAGAGGAGTCTCTCGCTTCCTGGAGCAGGTCTGTTACAAGAGTGCCTGACTTTGAG 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1856 TAACCAGAGGAGTCTCTCGCTTCCTGGAGCAGGTCTGTTACAAGAGTGCCTGACTCTGAG 1915
Query 1923 GAAGCTGTTCATCCATGGAACAGCTCATGAGCATTTCATGAACTTTTTGTTGAGAATCCC 1982
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GAAGCTCTTCATCCATGGAACAGCTCATGAGCATTTCATGAACTTTTTGTTGAGAATCCC 1975
Query 1983 AAACTTAAGGGATGTACAGCTTAGAGCAGACTATTATCCGGCGCCGGAGAACGATATGAG 2042
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1976 CAACTTAAGGGATGTACAGCTAAGAGCAGATTATTATCCGGCGCCGGAGAACGATATGAG 2035
Query 2043 CACAGAGATGAGAGTTGGTTCGTGTAGCCGATTCGAGGACCAATTGAACAGCCGCAACAT 2102
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2036 CACAGAGATGAGAGTTGGTTCCTGTAGCCGATTCGAGGACCAATTGAACAGCCGCAACAT 2095
Query 2103 CATTGACTGAAACTTGAAGAGTGAGTTACCT 2133
||||||||||||||| |||||||||||||||
Sbjct 2096 CATTGACTGAAACTT-AAGAGTGAGTTACCT 2125
> Ahg922450 jgi|Araly1|922450|scaffold_103731.1
Length=349
Score = 457 bits (247), Expect = 2e-127
Identities = 300/325 (92%), Gaps = 5/325 (2%)
Strand=Plus/Minus
Query 841 GAAGCTGGAGATTCAGCTGTCACGGCGGGGACGCTAATTGAAGTTTTCTCAGGTTTACCG 900
|||| |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||
Sbjct 348 GAAGGTGGAGATTCAGCTGTCACGGCGGGGATGCTAATTGAGGTTTTCTCTGGTTTACCG 289
Query 901 AATCTAGAGGAGCTGGTTCTTGACGTA-GGAA--A-G-GATGTGAAGCATAGTGGTGTAG 955
||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct 288 AATCTAGAGGAGCTGGTTCTTGACGTAGGGAAGGATGTGATGTGAAGCATAGTGGTGTAG 229
Query 956 CTTTAGAGGCATTGAATTCTAAATGCAAGAAGTTAAGAGTATTGAAGCTAGGACAGTTCC 1015
|||||||| ||| ||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 228 CTTTAGAGACATAGAATTCTAAATCCAAGAAGCTAAGAACATTGAAGCTAGGACAGTTCC 169
Query 1016 AAGGTGTTTGCTCTGCTACAGAATGGAGGAGGCTCGACGGTGTGGCTTTATGTGGAGGAT 1075
||| |||||||||| ||| ||||| ||||||| ||||||| |||||| ||||||||||||
Sbjct 168 AAGATGTTTGCTCTACTATAGAATAGAGGAGGTTCGACGGCGTGGCTCTATGTGGAGGAT 109
Query 1076 TGCAGTCGTTGTCGATTAAGAATTCCGGCGATTTGACTGATATGGGTTTGGTGGCTATAG 1135
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 108 TGCAGTCGTTGTCGATTAAGAATTCCGGCGATTTGACCAATATGGGTTTGGTGGCTATAG 49
Query 1136 GGAGAGGATGTTGTAAGTTGACTAC 1160
||||||||||||||||||||| |||
Sbjct 48 GGAGAGGATGTTGTAAGTTGATTAC 24
> Ahg944174 jgi|Araly1|944174|scaffold_700403.1
Length=343
Score = 335 bits (181), Expect = 1e-90
Identities = 247/277 (89%), Gaps = 11/277 (4%)
Strand=Plus/Minus
Query 841 GAAGCTGGAGATTCAGCTGTCACGGCGGGGACGCTAATTGAAGTTTTCTCAGGTTTACCG 900
|||| |||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 342 GAAGATGGAGATTCAGCGGTCACGGCGGGGACGCTAATTGAGGTTTTCTCTGGTTTACTG 283
Query 901 AATCTAGAGGAGCTGGTTCTTGACGTA-GGAA--A-G-GATGTGAAGCATAGTGG---T- 951
||| |||| |||||||||||||||||| |||| | | || |||||||||||||| |
Sbjct 282 AATATAGAAGAGCTGGTTCTTGACGTAGGGAAGGATGTGAAGTGAAGCATAGTGGCCATG 223
Query 952 --GTAGCTTTAGAGGCATTGAATTCTAAATGCAAGAAGTTAAGAGTATTGAAGCTAGGAC 1009
||||||||| || ||| ||||||||||||||||||| |||||| |||||||||||||
Sbjct 222 GCGTAGCTTTATAGACATAGAATTCTAAATGCAAGAAGCTAAGAGCCTTGAAGCTAGGAC 163
Query 1010 AGTTCCAAGGTGTTTGCTCTGCTACAGAATGGAGGAGGCTCGACGGTGTGGCTTTATGTG 1069
|||||||||||||||||||| ||||||||| ||||||| ||||||| |||||| ||||||
Sbjct 162 AGTTCCAAGGTGTTTGCTCTACTACAGAATAGAGGAGGTTCGACGGCGTGGCTCTATGTG 103
Query 1070 GAGGATTGCAGTCGTTGTCGATTAAGAATTCCGGCGA 1106
|||||||||||||||||||||||||||||||||||||
Sbjct 102 GAGGATTGCAGTCGTTGTCGATTAAGAATTCCGGCGA 66
> Ahg946057 jgi|Araly1|946057|scaffold_702286.1
Length=343
Score = 329 bits (178), Expect = 5e-89
Identities = 246/277 (89%), Gaps = 11/277 (4%)
Strand=Plus/Minus
Query 841 GAAGCTGGAGATTCAGCTGTCACGGCGGGGACGCTAATTGAAGTTTTCTCAGGTTTACCG 900
|||| |||||||||||| |||| |||||||||||||||||| |||||||| |||||||||
Sbjct 342 GAAGGTGGAGATTCAGCGGTCATGGCGGGGACGCTAATTGAGGTTTTCTCTGGTTTACCG 283
Query 901 AATCTAGAGGAGCTGGTTCTTGACGTA-GGAA--A-G-GATGTGAAGCATAGTGG---T- 951
||| |||| |||||||||||||||||| |||| | | || |||||||||||||| |
Sbjct 282 AATATAGAAGAGCTGGTTCTTGACGTAGGGAAGGATGTGAAGTGAAGCATAGTGGCCATG 223
Query 952 --GTAGCTTTAGAGGCATTGAATTCTAAATGCAAGAAGTTAAGAGTATTGAAGCTAGGAC 1009
||||||||| || ||| ||||| ||||||||||||| ||||| ||||||||||||||
Sbjct 222 GCGTAGCTTTATAGACATAGAATTTTAAATGCAAGAAGCTAAGAACATTGAAGCTAGGAC 163
Query 1010 AGTTCCAAGGTGTTTGCTCTGCTACAGAATGGAGGAGGCTCGACGGTGTGGCTTTATGTG 1069
|||||||||||||||||||| ||||||||| ||||||| ||||||| |||||| ||||||
Sbjct 162 AGTTCCAAGGTGTTTGCTCTACTACAGAATAGAGGAGGTTCGACGGCGTGGCTCTATGTG 103
Query 1070 GAGGATTGCAGTCGTTGTCGATTAAGAATTCCGGCGA 1106
|||||||||||||||||||||||||||||||||||||
Sbjct 102 GAGGATTGCAGTCGTTGTCGATTAAGAATTCCGGCGA 66
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87721834235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5