BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42770.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483374 jgi|Araly1|483374|fgenesh2_kg.4__2434__AT2G42770.1 1483 0.0
> Ahg483374 jgi|Araly1|483374|fgenesh2_kg.4__2434__AT2G42770.1
Length=1093
Score = 1483 bits (803), Expect = 0.0
Identities = 1029/1129 (91%), Gaps = 51/1129 (5%)
Strand=Plus/Plus
Query 1 AAATGGACAGGACTCATTTGCGATTTTTAAGATTTAGGCAAAACTCTTCTCTGTTTCGAC 60
|||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||
Sbjct 1 AAATGGACAGGACTCATTTGCGGTTTTAAAGATTTAGGC-AAA-----CTCTGTTTCGAA 54
Query 61 G--CAAAAGGAAGCA-TTTTTAATGGACGCATTGGGTGGTTGCGGCGGCGCTGGTGGTTT 117
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 GAAAAAAAGGAAGCATTTTTTAATGGACGCATTGGGTGGTTGCGGCGGCGCTGGTGGTTT 114
Query 118 CTGGGGATGGAATGGCTTCGATCAACGGAGAAAGAAGAAGTCTTCCGGTGATAGAGGTAA 177
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 115 CTGGGGATGGAATGGCTTCGAACAACGGAGAAAGAAGAAGTCTTCCGGCGATAGAGGTAA 174
Query 178 GAAACGTAATTCTGGATCGTCGGATTCCGTCGATGTGAGCAGAGACGCCGGCGGTTATCG 237
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GAAAAGGAATTCTGGATCGTCGGATTCCGTCGATGTGAGCAGAGACGCCGGCGGTTATCG 234
Query 238 GTTTCCTTTGAAGCAAGCTGTGACGGCCGGAGCACTCACTTTCACCGGTGACACGATTGC 297
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 235 GTTTCCTTTGAAGCAAGCTGTGACAGCCGGCGCACTCACTTTCACCGGTGACACGATTGC 294
Query 298 TCAGCTATCAGGGAGATGGAAAAAGAGAACCGCTCTTAAACAATCATCTTCTGAGCTTGA 357
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCAGCTATCTGGGAGGTGGAAAAAGAGAACCGCTCTTAAACAATCATCTTCTGAGCTTGA 354
Query 358 CGAGGGGGAATTGTGGAACATTTTCTCAGAACATGACTGGATTCGTGCGCTGCGGATGAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CGAGGGGGAATTGTGGAACATTTTCTCAGAACATGACTGGATTCGTGCGCTGCGGATGAG 414
Query 418 TTCTTACGGGTTTCTCTTGTATGGTCCTGGTTCTTATGCGTGGTACCAATTCCTTGATCA 477
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 415 CTCTTACGGGTTTCTTTTGTATGGCCCTGGTTCTTATGCGTGGTACCAATTCCTTGATCA 474
Query 478 TTCTTTGCCTAAACCAACTGCGACAAATCTAGTGCTTAAGGTTCTGCTTAACCAAGTAAT 537
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 475 TTCTTTGCCTAAACCAACCGCCACAAATCTAGTGCTTAAGGTTCTGCTTAACCAAGTGAT 534
Query 538 CCTTGGTCCATCTGTGATTGCTGTTATATTTGCTTGGAACAACTTGTGGCTGGGAAAGCT 597
||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 535 CCTCGGTCCTTCTGTGATCGCTGTTATATTTGCTTGGAACAACTTATGGCTGGGAAAACT 594
Query 598 CTCTGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGGATTTCG 657
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 CTCTGAGCTCGGAAACAAGTATCAGAAAGATGCTCTTCCAACGCTTCTTTATGGATTTCG 654
Query 658 CTTCTGGGTTCCCGTTAGCATACTTAACTTTTGGGTAGTCCCGCTTCAAGCTCGAGTAGC 717
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 655 CTTTTGGGTTCCCGTTAGCATCCTTAACTTTTGGGTAGTCCCGCTTCAAGCTCGTGTAGC 714
Query 718 GTTCATGTCCATGGGTTCTGTGTTTTGGAACTTCTACTTATCTTCAACTATGAGCAAGTA 777
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 715 GTTCATGTCCATGGGTTCTGTGTTTTGGAACTTCTACTTATCTTCAACAATGAGCAAGTA 774
Query 778 GTTACATTTATATTTGTATTCTTCAGCCTCGCTGAGTGATAATATATCATTCTGAAAGGT 837
||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 775 GTTACATATATATTTGTATTCTTCAGCCTCACAGAGTGATAATATATCATTCTGAAAGTT 834
Query 838 TTCAAATACAAAATTAC-TG-TT-TA-CCAAGAGACTATGGAAGGCTCTTCTCATCCTCA 893
||||| ||||||| || | || || |||| | |||||||||||||||| || ||||
Sbjct 835 TTCAA-TACAAAAGTAAGTACTTATAGCCAATA---TATGGAAGGCTCTTCTGATTCTCA 890
Query 894 CTCCTTCC-TTTC-TTTG-AGTATCGCACAACTAATGTGTTACTCTGATCAAACTCATGG 950
||||||| ||| |||| | || |||| | |||||||||||||||||||||||||||||
Sbjct 891 CTCCTTCAGTTTTATTTGCA-TAGCGCA-A-CTAATGTGTTACTCTGATCAAACTCATGG 947
Query 951 AA-AA--CTATCTCCTCTAAAAACTTTAGT-TTGAGTGTTTTTCTTGAGTTCAACTACTT 1006
|| || ||||||||||||||||||| ||| || | | |||| ||||||| |||||||||
Sbjct 948 AACAAAACTATCTCCTCTAAAAACTTAAGTGTTTA-T-TTTT-CTTGAGT-CAACTACTT 1003
Query 1007 GTGGGTGTTG-GGATTATTAGTTTCGAGAAGTTACTGTATAATTTTTGAATTTTTATCAT 1065
| |||||||| |||| ||||||| | | ||| ||||| | | | | | ||
Sbjct 1004 GCGGGTGTTGTGGAT-ATTAGTT-C-A----TTA--GTATACTGT---A-T----A--AT 1044
Query 1066 TTTAACTCTCAGTAACAAATTACTTTAAACTTTTGAATCTTATGACTTA 1114
||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1045 TTTAACTCTCAGTAACAGATTACTTTAAACTTTTGAATCTTATAACTTA 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5