BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42975.1

Length=731
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321975 jgi|Araly1|321975|fgenesh1_pm.C_scaffold_4002032           837    0.0  


> Ahg321975 jgi|Araly1|321975|fgenesh1_pm.C_scaffold_4002032
Length=564

 Score =  837 bits (453),  Expect = 0.0
 Identities = 533/570 (94%), Gaps = 12/570 (2%)
 Strand=Plus/Plus

Query  52   ATGGCCTTGAACTTCTTCTCCACTTCTCTTCACCCAATTTCAAACCCATCTTCTTCCTCT  111
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCCTTGAACTTCTTCTCCGCTTCTCTTCACCCAATTTCAAACCCATCTTCTTCCTCT  60

Query  112  CGATCCAAACAGAG-C--CATCATCTCCTTCTGCAACTCTCTTCTCCTCCAGCAACACGT  168
            |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  61   CGATCCAAACAGAGACATCATCATCTCCTTCTGCAACTCTCTTCTCCTCCAGCAACACGC  120

Query  169  GTCCGCTCCGAGCGAAGTGAAATCGGCGTCACTGACGacaacaacaacaacaacGATAct  228
            ||||| || ||||| || |||||||||||||||   ||||||||| |   |  |  | ||
Sbjct  121  GTCCGTTCTGAGCGGAGCGAAATCGGCGTCACT---GACAACAACGA-TTCTTC--TTCT  174

Query  229  tcttcgtcttctttctccggttcttcgtcttc-t--tcATCAGTACGCACACAACTAGAT  285
            ||||| |||||||||||||||||||| ||||| |  ||||||||||||||||||||||||
Sbjct  175  TCTTCTTCTTCTTTCTCCGGTTCTTCTTCTTCTTCGTCATCAGTACGCACACAACTAGAT  234

Query  286  CTCCTTGAGCAGCTAACTTCAACAAGTGATGGGTACTTAAGTGATGGTGGTGGCTCAAGA  345
            |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  235  CTCCTTGAACAGCTAACTTCAACAAGTGATGGGTACTTGAGTGATGGTGGTGGCTCGAGA  294

Query  346  GGACTCACTATTCGTGACCAATTGGCTGGACTTGTTGGTGACAGAGACGATGATTTCAGC  405
            |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  |
Sbjct  295  GGACTCACAATTCGTGACCAATTGGCTGGACTTGTTGGTGACAGAGACGACGATTTCTCC  354

Query  406  ATTCCCTTAGGCAAGAACTTAAAGAAAGTGAGTCCTAAATTCTTAACGATATCTCAGAAA  465
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  355  ATTCCCTTAGGCAAAAACTTAAAGAAAGTGAGTCCTAAATTCTTAACCATATCTCAGAAA  414

Query  466  AGGAACATTAAGAGACAAAGCTACCTTAATGAGGTCTCTCAGAGGAATGATTCTGTTTTC  525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  AGGAACATTAAGAGACAAAGCTACCTTAATGAGGTCTCTCAGAGGAATGATTCTGTTTTC  474

Query  526  TTTGCTACTATTGGCGCCTTTGTAATCCTTCCTCCTTTGGTCATTCTAGCTATTGCTATC  585
            ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  475  TTTGCTACTATCGGCGCCTTTGTAATCCTTCCGCCTTTGGTCATTCTAGCTATTGCTATC  534

Query  586  TTAACTGGCTATGTTCAACTCTTCCCTTAA  615
            ||||||||||||||||||||||||||||||
Sbjct  535  TTAACTGGCTATGTTCAACTCTTCCCTTAA  564



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26914779402


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5