BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42975.1 Length=731 Score E Sequences producing significant alignments: (Bits) Value Ahg321975 jgi|Araly1|321975|fgenesh1_pm.C_scaffold_4002032 837 0.0 > Ahg321975 jgi|Araly1|321975|fgenesh1_pm.C_scaffold_4002032 Length=564 Score = 837 bits (453), Expect = 0.0 Identities = 533/570 (94%), Gaps = 12/570 (2%) Strand=Plus/Plus Query 52 ATGGCCTTGAACTTCTTCTCCACTTCTCTTCACCCAATTTCAAACCCATCTTCTTCCTCT 111 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCCTTGAACTTCTTCTCCGCTTCTCTTCACCCAATTTCAAACCCATCTTCTTCCTCT 60 Query 112 CGATCCAAACAGAG-C--CATCATCTCCTTCTGCAACTCTCTTCTCCTCCAGCAACACGT 168 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGATCCAAACAGAGACATCATCATCTCCTTCTGCAACTCTCTTCTCCTCCAGCAACACGC 120 Query 169 GTCCGCTCCGAGCGAAGTGAAATCGGCGTCACTGACGacaacaacaacaacaacGATAct 228 ||||| || ||||| || ||||||||||||||| ||||||||| | | | | || Sbjct 121 GTCCGTTCTGAGCGGAGCGAAATCGGCGTCACT---GACAACAACGA-TTCTTC--TTCT 174 Query 229 tcttcgtcttctttctccggttcttcgtcttc-t--tcATCAGTACGCACACAACTAGAT 285 ||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||| Sbjct 175 TCTTCTTCTTCTTTCTCCGGTTCTTCTTCTTCTTCGTCATCAGTACGCACACAACTAGAT 234 Query 286 CTCCTTGAGCAGCTAACTTCAACAAGTGATGGGTACTTAAGTGATGGTGGTGGCTCAAGA 345 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 235 CTCCTTGAACAGCTAACTTCAACAAGTGATGGGTACTTGAGTGATGGTGGTGGCTCGAGA 294 Query 346 GGACTCACTATTCGTGACCAATTGGCTGGACTTGTTGGTGACAGAGACGATGATTTCAGC 405 |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 295 GGACTCACAATTCGTGACCAATTGGCTGGACTTGTTGGTGACAGAGACGACGATTTCTCC 354 Query 406 ATTCCCTTAGGCAAGAACTTAAAGAAAGTGAGTCCTAAATTCTTAACGATATCTCAGAAA 465 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 355 ATTCCCTTAGGCAAAAACTTAAAGAAAGTGAGTCCTAAATTCTTAACCATATCTCAGAAA 414 Query 466 AGGAACATTAAGAGACAAAGCTACCTTAATGAGGTCTCTCAGAGGAATGATTCTGTTTTC 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 AGGAACATTAAGAGACAAAGCTACCTTAATGAGGTCTCTCAGAGGAATGATTCTGTTTTC 474 Query 526 TTTGCTACTATTGGCGCCTTTGTAATCCTTCCTCCTTTGGTCATTCTAGCTATTGCTATC 585 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 475 TTTGCTACTATCGGCGCCTTTGTAATCCTTCCGCCTTTGGTCATTCTAGCTATTGCTATC 534 Query 586 TTAACTGGCTATGTTCAACTCTTCCCTTAA 615 |||||||||||||||||||||||||||||| Sbjct 535 TTAACTGGCTATGTTCAACTCTTCCCTTAA 564 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26914779402 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5