BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43010.1 Length=1753 Score E Sequences producing significant alignments: (Bits) Value Ahg483401 jgi|Araly1|483401|fgenesh2_kg.4__2461__AT2G43010.2 2158 0.0 > Ahg483401 jgi|Araly1|483401|fgenesh2_kg.4__2461__AT2G43010.2 Length=1633 Score = 2158 bits (1168), Expect = 0.0 Identities = 1434/1553 (92%), Gaps = 56/1553 (4%) Strand=Plus/Plus Query 177 AGATCTTCTCTTTCAACTTCTGATTCGTCCAGAAGCTTTCCTAATCTGAGATCTGACATG 236 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 AGATCTTCTCCTTCAACTTCTGATTCGTCCAGAAGCTTTCCTAATCTGAGATCTGACATG 190 Query 237 GAACACCAAGGTTGGAGTTTTGAGGAGAATTATAGTTTGTCCACTAATAGAAGATCTATC 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 GAACACCAAGGTTGGAGTTTTGAGGAGAATTATAGTTTGTCCACTAATAGAAGATCTATA 250 Query 297 AGGCCACAAGATGAACTAGTGGAGTTATTATGGCGAGATGGACAAGTGGTTCTGCAGAGC 356 |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 251 AGGCCACACGATGAACTAGTGGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTGCAGAGC 310 Query 357 CAAACTCATAGAGAACAAACCCAAACCCAGAAACAAGATCATCATGAA-GAAGCCCTAAG 415 |||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||| ||| Sbjct 311 CAAACTCATAGAGAACAAACCCAAACCCAGAAACAAGAACGTCATGAAGGAA-CCCAAAG 369 Query 416 ATCCAGCACCTTTCTTGAAGATCAAGAAACTGTCTCTTGGATCCAATACCCTCCAGATGA 475 ||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 370 ATCCAACACCTTTCTTGAAGATCAAGAAACTGTGTCTTGGCTCCAATACCCTCCAGATGA 429 Query 476 AGACCCATTCGAACCCGACGACTTCTCCTCCCACTTCTTCTCAACCATGGATCCCCTCCA 535 ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 430 AGACCCATTCGAAACCGACGACTTCTCCTCCCACTTCTTCTCAACCGTCGATCCCCTCCA 489 Query 536 GAGACCAACCTCAGAGACGGTTAAGCCTAAGTCCAGTCCTGAA-CCTCCTCAAGTCATGG 594 ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| Sbjct 490 GAGACCAACCTCAGAGACGGTTAAGCCTAAGTCTGGTCCT-AACCCTCCTCAAGTCATGG 548 Query 595 TTAAGCCTAAGGCCTGTCCTGACCCTCCTCCTCAAGTCATGCCTCCTCCAAAATTTAGGT 654 |||||||||||||||||||||| | |||||||||||||||||||| || |||||||||| Sbjct 549 TTAAGCCTAAGGCCTGTCCTGA--C-CCTCCTCAAGTCATGCCTCCCCCTAAATTTAGGT 605 Query 655 TAACAAATTCATCATCGGGGATTAGGGAAACAGAAATGGAACAGTACTCGGTAACGACCG 714 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 606 TAACAAATTCGCCATCGGGAATTAGGGAAACAGAAATGGAACAGTACTCGGTAACGACAA 665 Query 715 TTGGACCTAGCCATTGCGGAAGCAACCCATCACAGAACGATCTCGATGTCTCAATGAGTC 774 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 666 TTGGACCTAGCCATTGCGGGAGCAACCCATCCCAGAACGATCTCGATGTCTCAATGAGTC 725 Query 775 ATGATCGAAGCAAAAACATAGAAGAAAAGCTTAATCCGAACGCAAGTTCCTCATCAGGTG 834 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 726 AAGATCGAAGCAAAAACATAGAAGAAAAGCTTAACCCGAACGCAAGTTCCTCATCAGGTG 785 Query 835 GCTCCTCTGGTTGCAGCTTTGGCAAAGATATCAAAGAAATGGCTAGTGGAAGATGCATCA 894 ||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||| Sbjct 786 GCTCCTCTGGTTGCAGCTTTGGCAAGGATATCAAAGAAATGACTTGTGGAAGAAGCATCA 845 Query 895 CAACCGACCGTAAGAGAAAACGTATA-AAT-CACACTGACGAATCTGTATCTCTATCAGA 952 |||| ||||||||||||||| | ||| ||| ||||||| || ||||||||||||||||| Sbjct 846 CAACAGACCGTAAGAGAAAA-G-ATATAATGGACACTGATGACTCTGTATCTCTATCAGA 903 Query 953 TGCAATCGGTAACAAGTCGAACCAACGATCAGGATCAAACCGAAGGAGTCGAGCAGCTGA 1012 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 904 TGTAATCGGTAACAAGTCGAACCAACGATCAGGATCAAACCGAAGGAGTCGAGCAGCTGA 963 Query 1013 AGTTCATAATCTCTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTTT 1072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 964 AGTTCATAATCTCTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTCT 1023 Query 1073 GCAAGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTTTAGACGAAGCCAT 1132 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 GCAGGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTTTAGACGAAGCCAT 1083 Query 1133 AGATTATTTGAAATCACTTCAGTTACAGCTTCAAGTGATGTGGATGGGGAGTGGAATGGC 1192 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1084 AGATTATTTGAAATCACTTCAGTTACAACTTCAAGTGATGTGGATGGGGAGTGGAATGGC 1143 Query 1193 GGCGGCGGCGGCTTCGGCTCCGATGATGTTCCCCGGAGTTCAACCTCAGCAGTTCATACG 1252 |||||| | | | |||||||||||||||||||||||||| || ||||||||| Sbjct 1144 GGCGGC------T-C--C---GATGATGTTCCCCGGAGTTCAACCTCCGCCGTTCATACG 1191 Query 1253 TCAGATACAGAGCCCGGTACAGTTACCTCGATTTCCGGTTATGGATCAGTCTGCAATTCA 1312 |||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1192 TCAGATGCAGAGTCCGGTACAGTTACCTCGATTTCCGGTTATGGATCGGTCTGCAATTCA 1251 Query 1313 GAACAATCCCGGTTTAGTTTGCCAAAACCCGGTACAAAACCAGATCATCTCCGACCGGTT 1372 ||||||||||||||||||||| || |||||| ||||||||||||| |||||||||||||| Sbjct 1252 GAACAATCCCGGTTTAGTTTGTCAGAACCCGATACAAAACCAGATAATCTCCGACCGGTT 1311 Query 1373 TGCTAGATACATCGGTGGGTTCCCACACATGCAGGCCGCGACTCAGATGCAGCCGATGGA 1432 |||||| |||||||||||||||||||| |||||||||||| ||||| | | |||||| Sbjct 1312 TGCTAGGTACATCGGTGGGTTCCCACAGATGCAGGCCGCGGCTCAG---C--C-GATGGA 1365 Query 1433 GATGTTGAGATTTAGTTCACCGGCGGGACAGCAAAGTCAACAACCGTCGTCTGTGCCGAC 1492 |||||| |||||| ||| ||||||||||||||||| |||||||||| | ||| |||||| Sbjct 1366 GATGTTAAGATTTGGTTTACCGGCGGGACAGCAAATTCAACAACCG-C--CTGCGCCGAC 1422 Query 1493 GAAGACCACCGACGGTTCTCGTTTGGACCACTAGGTTGGTGAGCCActtttttacttcct 1552 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1423 GAAGATCACCGACGGTTCTCGTTTGGACCACTAGGTTGGTGAGGCACTTTTTTACTTCCT 1482 Query 1553 tatttttggtatgtttcttttt-tatatctatctttctGAACATACTTAAAACGTTCAAG 1611 |||||||||||||||| ||||| | ||||||| || ||||||||||||||||||| | Sbjct 1483 TATTTTTGGTATGTTTGTTTTTCT-TATCTAT-TTA-TGAACATACTTAAAACGTT-A-- 1536 Query 1612 GATGTATTATTATAGAGTA-AACGTGCAACTTCATTACGTTATTTTCTGTATATGTGAGT 1670 | | ||||| ||||| |||||||||||||||||||| ||||| | ||| Sbjct 1537 --T--A--------GAGTACAACGTACAACTTCATTACGTTATTTTATGTAT--G--AGT 1580 Query 1671 TTATGTATGTCAAAATGACATGATGAGATTTTTTGTAAACAACATCTTAAAAA 1723 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1581 TTATGTATGTCAAAATGACATGATGAGATTTTTTGTAAACAACATGTTAAAAA 1633 Score = 169 bits (91), Expect = 8e-41 Identities = 119/131 (91%), Gaps = 7/131 (5%) Strand=Plus/Plus Query 1 ACTTTCTGTCTGTACCCAAAAGAAGTAATGAACctctctcatcttcttcttctctgtttc 60 |||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| Sbjct 1 ACTTTCTGTCTGTACCCAAAAGAAGTAAAGAACCTCTCTTATCATCTTCTTCTCTGTTTC 60 Query 61 tttcatgttttgtgagttgttt-ctcaacaattttct-GGTCTCTT-agagtgagaggag 117 |||||||||||||||| |||| ||||||||||| || |||||||| |||||||||| | Sbjct 61 TTTCATGTTTTGTGAGA-GTTTTCTCAACAATTT-CTTGGTCTCTTTAGAGTGAGAGAA- 117 Query 118 a-gagatagag 127 | ||||||||| Sbjct 118 ACGAGATAGAG 128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65781853115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5