BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43030.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483405 jgi|Araly1|483405|fgenesh2_kg.4__2465__AT2G43030.1 1519 0.0
> Ahg483405 jgi|Araly1|483405|fgenesh2_kg.4__2465__AT2G43030.1
Length=1001
Score = 1519 bits (822), Expect = 0.0
Identities = 967/1031 (94%), Gaps = 34/1031 (3%)
Strand=Plus/Plus
Query 1 AAGAGTGTGGCACAGAGCTTTATCCTCTCTCAGAGTTTCTTCTCCTCTGTGAATCTCCGA 60
||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 1 AAGAGTGTGGCACAGAGCTTTAT-C-CTCTCAGAGTTTCTTCTCCTCTGTGAATCCCCGA 58
Query 61 CAATGGCGATAGCTATGGCGGTTGTTTCTTTCCCATCTCTGCTCAACAAAACAACCTTAT 120
|||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 59 CAATGGCGATGGCTATGGCGGTTGTTTCATTCCCATCTCTACTCAACAAATCAACCTTAT 118
Query 121 CCTCTTCACTCTTCACTCCC-ACTTTCCTCCCGGCGAAATCCTCTTCACTTCTCATCAAA 179
|||||||||||||||| ||| || |||||||| |||||||||||||| |||||||||||
Sbjct 119 CCTCTTCACTCTTCAC-CCCAACCTTCCTCCCAGCGAAATCCTCTTCCCTTCTCATCAAT 177
Query 180 TCATCACCAAAAACCAGATTCGTGGTTTCATCATCCATGGAAGCTGGAATCGGAGTAATG 239
|| || || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 TCTTCCCCCAAAACCAGATTCGTGGTTTCAGCATCCATGGAAGCTGGAATCGGAGTAATG 237
Query 240 GGGTCAAAACTCGGGATGATGAGTTTCTTCGAAGAAGACGGCACAGTAGTTCCAGTAACA 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GGTTCAAAACTCGGGATGATGAGTTTCTTCGAAGAAGACGGCACAGTAGTTCCAGTAACA 297
Query 300 GTCGTCGGATTCCGCGAAGGTAACATCGTAACCCAAATCAAAACCCTAGCCACAGACGGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 GTCGTCGGATTCCGCGAAGGTAACATCGTAACCCAAATCAAAACCCTAGCCACCGACGGT 357
Query 360 TACGACGCGGTTCAAATCGGTTACCGTCGTGTACGCGACAAAAAGCTAACTAAACCGGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 358 TACGACGCGGTTCAAATCGGTTACCGTCGTGTACGCGACAAAAAGCTAAGTAAACCGGAA 417
Query 420 ACCGGTCATCTCCAAAAAGCCGGTACAATCCCAATGAGACATCTCCAAGAGTTCAGATTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACCGGTCATCTCCAAAAAGCCGGTACAATCCCAATGAGACATCTCCAAGAGTTCAGATTA 477
Query 480 ACAAACATCGAAGGATTCGAACCGAACCAGAAGCTTGTGTTCGATGAGATATTCAAAGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACAAACATCGAAGGATTCGAACCGAACCAGAAGCTTGTGTTCGATGAGATATTCAAAGAA 537
Query 540 GGTGATCTCGTTGATGTAGCTGGAACCACAATTGGTAAAGGGTTTCAAGGAGGAATCAAA 599
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 538 GGTGATCTCGTTGATGTAGCTGGAACTACGATTGGTAAAGGGTTTCAAGGAGGAATCAAA 597
Query 600 AGGCATCATTTCAAGAGAGGTCAGATGACTCATGGTTCCAAGAGTCATCGAGCTTTGGGT 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGACATCATTTCAAGAGAGGTCAGATGACTCATGGTTCCAAGAGTCATCGAGCTTTGGGT 657
Query 660 TCGATTGGTGCTGGTACTACTCCGGGAAGAGTTTATAAAGGGAAGAAGATGCCTGGAAGA 719
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 TCGATTGGTGCTGGTACTACTCCGGGAAGAGTTTACAAAGGGAAGAAGATGCCTGGAAGA 717
Query 720 ATGGGAGGGACGAGGACAAAGATTAGGAAGCTTAAGATTGTTAAAGTTGATAAGGAGCTT 779
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATGGGAGGGACGAGGACCAAGATTAGGAAGCTTAAGATTGTTAAAGTTGATAAGGAGCTT 777
Query 780 AATGTTGTCATGATCAAAGGTGCTTTGCCTGGTAAGCCTGGGAATCTTCTTCGTATTACT 839
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 AATGTTGTCATGATCAAAGGTGCTTTACCTGGTAAGCCTGGGAATCTTCTTCGTATTACT 837
Query 840 CCCGCTAAAATCGTCGGAGTTAACATTCCCAAGAACTAGTAGAGAAGAGACTCTGTTTTG 899
|| |||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 838 CCAGCTAAAATCGTCGGAGTTAACATTCCCAAGAACTAGTAGA-AAAAGACTC------- 889
Query 900 TTTTGTAATGTTGACTTGTGTTTATCCATTCCTTGAAAATTTGTATCGAATTGCTAAATC 959
||| | |||| || || || | | || |||||||||||||||||||||||
Sbjct 890 ---TGT--T-TTGA-TT-TG--TA---A-T-GTT---AATTTGTATCGAATTGCTAAATC 931
Query 960 ACAGTTTCTTTCTTAGAATTGGAGTTTTTGTATAAGTCGGAAGT-A-T-TTCTATGCTAA 1016
|||||||| | |||||||||||||||||||| ||||||||| | | | ||||||| |||
Sbjct 932 ACAGTTTC-GTATTAGAATTGGAGTTTTTGTAAAAGTCGGAAATCACTATTCTATGTTAA 990
Query 1017 TGTTCTTGAAT 1027
|||||||||||
Sbjct 991 TGTTCTTGAAT 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5