BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43140.2
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483415 jgi|Araly1|483415|fgenesh2_kg.4__2475__AT2G43140.1 1221 0.0
> Ahg483415 jgi|Araly1|483415|fgenesh2_kg.4__2475__AT2G43140.1
Length=934
Score = 1221 bits (661), Expect = 0.0
Identities = 850/936 (91%), Gaps = 34/936 (4%)
Strand=Plus/Plus
Query 8 CATCAGATTAGCTTTTGTAGGGTTTTTCTTTTCCGGTTTCATGTACCCTCCTAATTCCTC 67
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CATCAGATTAACTTTTGTAGGGTTTTTCTTTTCCGATTTCATGTACCCTCCTAATTCCTC 60
Query 68 TAAGTCCACCGCT-CATGACGGCGGCGGCGATGCCGACACCAATCAATATGACTCAGCCG 126
||||||||||||| || || ||||||||| ||| ||| ||||||||||||||||||||
Sbjct 61 TAAGTCCACCGCTCCA-GA---CGGCGGCGACGCCTACAGCAATCAATATGACTCAGCCG 116
Query 127 CTGGAGCTACCCGTGATTTCTCCTCTCTTGGCCCTCAAACCCACCA-TCATCCGCCACCG 185
| ||||| |||||||||||||||||||||| |||||||| |||||| || | | || |||
Sbjct 117 CCGGAGCCACCCGTGATTTCTCCTCTCTTGCCCCTCAAAGCCACCATTC-TTCACCGCCG 175
Query 186 CAGCGGCAGCAGCAGC-ATCAGCAGAATCC-CAACCTCGTCGGCCATTATTTACCGGGCG 243
|||||||||||||| | ||| | || || | | ||||||||||||| ||| | ||||
Sbjct 176 CAGCGGCAGCAGCA-CAATC--C-CAA-CCTCCTCGTCGTCGGCCATTACTTATCTGGCG 230
Query 244 AGCCATCTTCCATCGGATTCGATTCCAACGCTTCTTCTTCGTCTTCTTTGTTCCGACACA 303
| |||||||||||||||||||||| | || | ||||||| |||||||||||||||||||
Sbjct 231 AACCATCTTCCATCGGATTCGATT-C--CGGTGCTTCTTCTTCTTCTTTGTTCCGACACA 287
Query 304 GAAGCTCTCCGGCTGGATTCTACGACCAACATCTTCCCACTGAT-CC--C--AAC-GGTT 357
||||||||||||| |||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 288 GAAGCTCTCCGGCCGGATTCTACGACCAACATCTTCCCACTGATCCCAACGGAACAGGTT 347
Query 358 TTTCTCTAGGACGGCCAAACGGAGGCT--A----CGGCGGAGGAGGAGAGCA-AGGGCCG 410
|||||||||||| ||||||| |||| | | |||||||||||||||| | || ||||
Sbjct 348 TTTCTCTAGGACAGCCAAACAGAGGTTACAGCGGCGGCGGAGGAGGAGAG-AGAGCGCCG 406
Query 411 TCGAGGTTGAAGTCGGAGCTGAGATTCTCTAGTGGGAGTAGTAGCCATCAAGAACATAAT 470
|||||||||||||||||||||||||||||| | || |||||||| ||||||||||||||
Sbjct 407 TCGAGGTTGAAGTCGGAGCTGAGATTCTCTGGCGGCAGTAGTAGTCATCAAGAACATAAG 466
Query 471 TCTCTACCGCGAATCTCGGAGGTTGAAGCGGCTGCAGCGGCTAGAAACGGTGTCGCATCA 530
|||||||||||||| ||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 467 TCTCTACCGCGAATTTCGGAGGCTGAAGCGGCTGCGGCGGCTATAAACGGTGTCGCATCG 526
Query 531 AGTAGTATGAGTTTTGG-AA--ATAATCGTACTAACAATTGGGACAACTCGTCTTCTCAT 587
||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||
Sbjct 527 AGTAGTATGAGTTTTGGAAACCATAATCATAATAACAATTGGGACAACTCGTCTTCTCAT 586
Query 588 ATCAGTTTCACCATTGATCAACCCGGAAAACGGTCCAAGAACTCCGACTTTTTCACCTTA 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 587 ATCAGTTTCACCATTGATCAACCCGGAAAACGGTCCAAGAACTCCGACTTTTTCACGTTA 646
Query 648 GAAACTCAGTATAGCATGCCGCAAACAACTCTGGAAATGGCGACAATGGAGAACTTGATG 707
|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 647 GAAACTCAGTTTAGCATGCCGCAAACATCTCTGGAAATGGCGAGAATGGAGAACTTGATG 706
Query 708 AACATCCCAGAGGACTCGGTGCCTTGTAGGGCTAGAGCCAAGCGCGGCTTCGCGACTCAC 767
|||||||||||||||||||| ||||||| |||||| || |||||||||||||||||||||
Sbjct 707 AACATCCCAGAGGACTCGGTTCCTTGTAAGGCTAGGGCTAAGCGCGGCTTCGCGACTCAC 766
Query 768 CCACGCAGCATTGCTGAAAGGGAGAGAAGAACGAGGATAAGCGGGAAGCTGAAGAAGCTA 827
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 767 CCACGCAGCATCGCTGAAAGGGAGAGAAGAACGAGAATAAGCGGGAAGCTGAAGAAGCTA 826
Query 828 CAAGAACTTGTGCCTAATATGGACAAGCAAACGAGCTACGCAGATATGTTGGATTTGGCT 887
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 827 CAAGAACTTGTGCCTAATATGGATAAGCAAACGAGCTACGCAGATATGTTGGATTTGGCT 886
Query 888 GTTGAGCATATCAAAGGTCTTCAGCACCAAGTAGAG 923
||||||||||||||||||||||| ||||||||||||
Sbjct 887 GTTGAGCATATCAAAGGTCTTCAACACCAAGTAGAG 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5