BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43330.1
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322009 jgi|Araly1|322009|fgenesh1_pm.C_scaffold_4002066 2145 0.0
> Ahg322009 jgi|Araly1|322009|fgenesh1_pm.C_scaffold_4002066
Length=1566
Score = 2145 bits (1161), Expect = 0.0
Identities = 1263/1313 (96%), Gaps = 4/1313 (0%)
Strand=Plus/Plus
Query 501 GAAACTATTGTAAGTATGGCTTTAGTTGGTGCCATGATTGGTGCTGCAGCTGGAGGTTGG 560
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 256 GAAACTATTGTAAGTATGGCTTTAGTTGGTGCGATGATTGGTGCTGCAGCAGGAGGTTGG 315
Query 561 ATCAATGACTACTACGGTCGTAAAAAGGCGACTCTT-TTTGCAGATGTTGTCTTTGCAGC 619
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 316 ATCAATGACTACTACGGTCGTAAAAAGGCGACT-TTGTTTGCTGATGTTGTCTTTGCAGC 374
Query 620 TGGAGCTATCGTTATGGCTGCTGCTCCTGATCCGTATGTTTTGATATCGGGTCGTCTCTT 679
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TGGAGCAATCGTTATGGCTGCTGCTCCTGATCCGTATGTTTTGATATCGGGTCGTCTCTT 434
Query 680 GGTCGGTTTAGGAGTTGGTGTTGCTTCTGTGACTGCTCCGGTTTATATAGCGGAAGCATC 739
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 435 GGTCGGTTTAGGAGTTGGTGTTGCTTCTGTGACTGCGCCGGTTTATATAGCGGAAGCATC 494
Query 740 TCCATCGGAAGTTAGAGGTGGACTTGTGAGCACCAACGTATTGATGATCACTGGTGGACA 799
||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 495 CCCATCAGAAGTGAGAGGTGGACTTGTGAGCACCAATGTATTGATGATCACCGGTGGACA 554
Query 800 GTTTCTTTCATATCTCGTTAATTCTGCTTTCACACAGGTTCCAGGAACATGGAGATGGAT 859
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 GTTTCTTTCATACCTCGTTAATTCTGCTTTCACACAGGTTCCAGGAACATGGAGATGGAT 614
Query 860 GCTTGGTGTTTCAGGCGTTCCCGCTGTGATTCAGTTCATCCTCATGCTTTTCATGCCAGA 919
||||||||||||||||||||| ||||| || || ||| |||| |||||||||||||||||
Sbjct 615 GCTTGGTGTTTCAGGCGTTCCTGCTGTTATCCAATTCGTCCTAATGCTTTTCATGCCAGA 674
Query 920 ATCCCCTCGATGGCTTTTCATGAAAAATCGTAAAGCGGAAGCCATCCAAGTGCTCGCCAG 979
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 675 ATCCCCTCGATGGCTTTTCATGAAGAATCGTAAAGCGGAAGCCATCCAAGTGCTCGCCAG 734
Query 980 AACCTATGACATCTCGCGGTTAGAAGACGAGATTGATCATCTTTCAGCGGCTGAAGAGGA 1039
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 735 AACCTATGACATCTCGCGGTTGGAAGACGAGATCGATCATCTTTCAGCGGCTGAAGAGGA 794
Query 1040 AGAAAAACAAAGGAAGCGCACTGTTGGCTACTTGGATGTTTTCAGATCCAAAGAATTGAG 1099
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGAAAAACAAAGGAAACGCACTGTTGGCTACTTGGATGTTTTCAGATCCAAAGAATTGAG 854
Query 1100 ACTTGCATTTCTT-GCCGGAGCAGGACTTCAGGCGTTTCAGCAGTTCACTGGTATCAATA 1158
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 ACTTGCATTT-TTGGCCGGAGCAGGACTTCAGGCGTTTCAGCAGTTCACTGGTATCAATA 913
Query 1159 CAGTTATGTACTACAGCCCTACGATAGTCCAAATGGCTGGATTTCACTCAAACCAGCTCG 1218
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 914 CTGTTATGTACTACAGCCCTACGATAGTCCAAATGGCTGGATTTCACTCAAACCAGCTTG 973
Query 1219 CTTTGTTCCTGTCTCTCATTGTTGCTGCCATGAATGCTGCTGGAACAGTCGTGGGGATTT 1278
|| | ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 974 CTCTATTCCTCTCTCTCATCGTTGCTGCCATGAACGCTGCTGGAACAGTCGTGGGGATTT 1033
Query 1279 ACTTCATCGATCATTGTGGAAGGAAAAAGCTAGCTCTCTCAAGTTTATTTGGCGTCATTA 1338
||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 1034 ACTTCATCGATCATTGTGGAAGGAAAAAGCTTGCTCTCTCAAGCTTATTCGGTGTCATTA 1093
Query 1339 TATCACTCTTAATCCTCTCAGTCTCGTTTTTCAAACAATCTGAGACATCATCTGATGGAG 1398
|||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1094 TATCTCTCCTAATCCTCTCAGTCTCGTTTTTCAAACAATCTGATACATCATCTGATGGAG 1153
Query 1399 GGCTCTATGGTTGGCTCGCTGTGCTTGGCTTAGCTCTATACATTGTTTTCTTTGCACCGG 1458
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1154 GGCTCTACGGTTGGCTCGCTGTGCTTGGCTTAGCTCTATACATTGCTTTCTTTGCACCGG 1213
Query 1459 GAATGGGACCAGTCCCATGGACGGTGAACTCAGAGATATACCCTCAACAATACCGAGGCA 1518
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1214 GAATGGGACCGGTCCCTTGGACGGTGAACTCAGAGATATACCCTCAACAGTACCGAGGCA 1273
Query 1519 TATGCGGAGGCATGTCAGCTACAGTTAACTGGATCAGCAATTTGATTGTGGCACAAACAT 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TATGCGGAGGCATGTCAGCTACAGTTAACTGGATCAGCAATTTGATTGTGGCACAAACAT 1333
Query 1579 TCTTGACAATCGCGGAAGCTGCTGGAACAGGAATGACTTTCTTGATTTTGGCGGGAATTG 1638
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1334 TCTTGACAATCGCGGAAGCTGCTGGAACAGGAATGACTTTCTTGATTTTGGCGGGAATAG 1393
Query 1639 CGGTTCTTGCTGTAATCTTTGTGATTGTGTTTGTCCCTGAGACTCAAGGGCTAACGTTTT 1698
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1394 CGGTTCTTGCGGTAATCTTTGTGATTGTGTTTGTCCCTGAGACACAAGGGCTAACATTTT 1453
Query 1699 CGGAAGTTGAACAGATTTGGAAAGAAAGAGCTTATGGAAATATCAGTGGCTGGGGCAGTA 1758
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1454 CGGAAGTTGAACAGATTTGGAAAGAAAGAGCTTATGGAAATATCAGCGGTTGGGGCAGTA 1513
Query 1759 GCAGTGATAGCAACAACATGGAAGGGTTACTCGAGCAGGGATCTCAATCTTAA 1811
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 GCAGTGATAGCAACAACATGGAAGGGTTACTCGAGCAGGGATCTCAATCTTAA 1566
Score = 387 bits (209), Expect = 2e-106
Identities = 222/228 (97%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 282 ATGACATTGACGATCCCAAACGCACCTGGGAGCTCCGGGTACTTGGATATGTTCCCAGAG 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACATTGACGATCCCAAACGCACCTGGGAGCTCCGGGTACTTGGATATGTTCCCAGAG 60
Query 342 AGAAGGATGTCGTATTTTGGGAATTCTTACATTCTGGGTTTGACTGTCACTGCCGGAATC 401
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AGAAGGATGTCGTATTTTGGGAATTCTTACATTCTGGGTTTGACTGTAACTGCCGGAATC 120
Query 402 GGTGGCCTTCTGTTCGGTTATGATACAGGTGTAATTTCCGGTGCCCTTTTGTACATTAAG 461
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTGGCCTTCTCTTTGGTTATGATACAGGTGTAATTTCCGGTGCCCTTTTGTACATTAAG 180
Query 462 GATGATTTCGAAGTTGTTAAGCAGAGCAGTTTCTTACAGG-AAACTAT 508
|||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 181 GATGATTTCGAAGTTGTTAAACAGAGCAGTTTCTTACAGGTAAATTAT 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76713753430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5