BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43360.1 Length=1413 Score E Sequences producing significant alignments: (Bits) Value Ahg935233 jgi|Araly1|935233|scaffold_403221.1 1847 0.0 Ahg342373 jgi|Araly1|342373|fgenesh1_pg.C_scaffold_3002136 558 3e-158 Ahg902342 jgi|Araly1|902342|Al_scaffold_0004_2992 470 2e-131 > Ahg935233 jgi|Araly1|935233|scaffold_403221.1 Length=1178 Score = 1847 bits (1000), Expect = 0.0 Identities = 1120/1178 (95%), Gaps = 8/1178 (1%) Strand=Plus/Plus Query 93 TCTGA-TTAGCAGATCAAATGATGCTTGTTCGATCTGTATTTCGATCTCAGTTGCGACCC 151 ||||| || ||||||||||||||||||||||| || || |||||||||||| || ||||| Sbjct 5 TCTGATTTTGCAGATCAAATGATGCTTGTTCGGTCGGTGTTTCGATCTCAGATGAGACCC 64 Query 152 TCTGTCTCGGGTGGTCTGCAATCTGCTTCTTGCTATTCTTCATTATCTGCTGCTTCAGCT 211 |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 65 TCTGTCTCTGGTGGTCTGCAATTTGCTTCTTGCTATTCTTC---ATCTGCTGCTTCAGCT 121 Query 212 GAAGCTGAGAGGACTATCAGAGAAGGTCCCAGAAACGATTGGAGTAGAGATGAAATCAAG 271 |||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 122 GAAGCTGAAAGGACTATCAGAGAAGGTCCCAGAAATGATTGGAGTAAAGATGAAATCAAG 181 Query 272 TCTGTTTATGATTCTCCTCTTCTTGACCTCCTCTTCCATGGAGCTCAGGTTCATAGACAT 331 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TCTGTTTATGATTCTCCTGTTCTTGACCTCCTCTTCCATGGAGCTCAGGTTCATAGACAT 241 Query 332 GTTCATAACTTCAGGGAGGTACAACAATGTACCCTCCTCTCCATAAAGACTGGTGGCTGT 391 |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 242 GTTCATAACTTCAGGGAGGTACAACAATGTACTCTCCTCTCTATAAAGACTGGTGGCTGC 301 Query 392 AGTGAAGACTGTTCATATTGTCCTCAGTCTTCGAGATATAGCACTGGAGTTAAGGCACAA 451 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 302 AGTGAAGACTGTTCATATTGTCCTCAATCCTCGAGATATAGCACTGGAGTTAAGGCCCAA 361 Query 452 AGACTCATGTCTAAGGACGCTGTCATTGATGCTGCTAAGAAGGCAAAAGAAGCTGGGAGC 511 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 362 AGACTCATGTCCAAGGACGCTGTCATTGATGCTGCAAAGAAGGCAAAAGAAGCTGGGAGC 421 Query 512 ACACGTTTTTGCATGGGTGCTGCTTGGCGAGATACAATTGGACGGAAAACCAACTTCAGC 571 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 422 ACACGTTTTTGCATGGGTGCTGCATGGCGAGATACAATTGGACGGAAAACCAACTTCAAC 481 Query 572 CAGATTCTTGAATACATCAAAGAAATAAGAGGCATGGGGATGGAAGTTTGCTGCACCTTA 631 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 CAGATTCTTGAATACATCAAAGAAATAAGAGGCATGGGGATGGAAGTTTGCTGCACCTTG 541 Query 632 GGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAGGCTGGCCTCACTGCTTATAAC 691 |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 542 GGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAAGCTGGACTCACTGCCTATAAC 601 Query 692 CACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTCATCACTACTAGAAGTTATGAC 751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 CACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTCATCACTACTAGAAGTTATGAC 661 Query 752 GATCGCCTTGAAACTCTT-AGCCATGTTCGTGATGCTGGAATCAACGTTTGTTCAGGAGG 810 || ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| Sbjct 662 GACCGCCTTGAAACTCTTGAGC-ATGTTCGTGAAGCTGGAATCAACGTTTGTTCAGGAGG 720 Query 811 AATCATAGGGCTTGGTGAGGCAGAGGAAGACAGAATAGGTTTATTACACACGCTGGCAAC 870 ||||||||||||||| |||||||||||||||||| ||||| |||||||||| || ||||| Sbjct 721 AATCATAGGGCTTGGAGAGGCAGAGGAAGACAGAGTAGGTCTATTACACACACTAGCAAC 780 Query 871 ACTTCCT-TCTCACCCTGAGAGTGTTCCCATTAATGCTCTACTTGCAGTGAAAGGCACTC 929 || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 ACCTCCTATG-CACCCTGAGAGTGTTCCCATTAATGCTCTACTTGCAGTGAAAGGCACTC 839 Query 930 CTCTTGAAGACCAGAAGCCAGTTGAGATATGGGAGATGATCAGGATGATTGGAACCGCAC 989 |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 840 CTCTCGAAGACCAGAAGCCGGTTGAGATATGGGAGATGATCAGGATGATCGGAACCGCAC 899 Query 990 GTATTGTAATGCCAAAAGCGATGGTGAGACTGTCTGCTGGTAGAGTCCGGTTCTCAATGT 1049 ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 900 GTATTGTAATGCCAAAAGCAATGGTGAGATTGTCTGCTGGTAGAGTCCGGTTCTCAATGG 959 Query 1050 CCGAACAAGCTCTCTGTTTCCTTGCTGGTGCAAACTCTATCTTCACCGGAGAGAAGCTTT 1109 |||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 960 CCGAGCAAGCCCTTTGTTTCCTTGCTGGTGCAAACTCTATCTTCACAGGAGAGAAGCTTT 1019 Query 1110 TAACCACACCAAACAATGATTTTGACGCTGACCAGCTCATGTTCAAGACATTAGGCCTCA 1169 ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1020 TAACCACACCAAACAATGATTTTGATGCCGACCAGCTCATGTTCAAGACATTAGGCCTCG 1079 Query 1170 TTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAGAAAACTGCGAGAAAGTTG 1229 |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 1080 TTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAAGCAGAAAACTGCGACAAAGTTG 1139 Query 1230 CTTCCGCTTCTCACTAATATCATTATCCACtttttttt 1267 |||||||||||||||||||||||||||||||||||||| Sbjct 1140 CTTCCGCTTCTCACTAATATCATTATCCACTTTTTTTT 1177 > Ahg342373 jgi|Araly1|342373|fgenesh1_pg.C_scaffold_3002136 Length=405 Score = 558 bits (302), Expect = 3e-158 Identities = 337/354 (95%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 605 ATGGGGATGGAAGTTTGCTGCACCTTAGGCATGATTGAGAAACAACAAGCACTAGAGCTA 664 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGGATGGAAGTTTGCTGCACCTTGGGCATGATTGAGAAACAACAAGCACTAGAGCTA 60 Query 665 AAGAAGGCTGGCCTCACTGCTTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCA 724 ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGAAAGCTGGACTCACTGCCTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCA 120 Query 725 AACGTCATCACTACTAGAAGTTATGACGATCGCCTTGAAACTCTT-AGCCATGTTCGTGA 783 ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| Sbjct 121 AACGTCATCACTACTAGAAGTTATGACGAACGCCTTGAAACTCTTGAGC-ATGTTCGTGA 179 Query 784 TGCTGGAATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGTGAGGCAGAGGAAGACAG 843 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 180 AGCTGGAATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGAGAGGCTGAGGAAGACAG 239 Query 844 AATAGGTTTATTACACACGCTGGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAA 903 | |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 240 AGTAGGTTTACTACACACACTAGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAA 299 Query 904 TGCTCTACTTGCAGTGAAAGGCACTCCTCTTGAAGACCAGAAGCCAGTTGAGAT 957 ||||||||||||||||||||||||| |||| |||||||||||||| |||||||| Sbjct 300 TGCTCTACTTGCAGTGAAAGGCACTTCTCTCGAAGACCAGAAGCCGGTTGAGAT 353 > Ahg902342 jgi|Araly1|902342|Al_scaffold_0004_2992 Length=660 Score = 470 bits (254), Expect = 2e-131 Identities = 303/326 (93%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 973 GATGA-TTGGAACCGCACGTATTGTAATGCCAAAAGCGATGGTGAGACTGTCTGCTGGTA 1031 ||||| |||||||||||| ||||||||||||||| || ||||||||| | |||||||||| Sbjct 324 GATGATTTGGAACCGCACTTATTGTAATGCCAAAGGCAATGGTGAGATTATCTGCTGGTA 383 Query 1032 GAGTCCGGTTCTCAATGTCCGAACAAGCTCTCTGTTTCCTTGCTGGTGCAAACTCTATCT 1091 ||||||||||||||||| | || || || || |||||||||||||||||||||||||||| Sbjct 384 GAGTCCGGTTCTCAATGGCGGAGCAGGCCCTGTGTTTCCTTGCTGGTGCAAACTCTATCT 443 Query 1092 TCACCGGAGAGAAGCTTTTAACCACACCAAACAATGATTTTGACGCTGACCAGCTCATGT 1151 |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| Sbjct 444 TCACCGGAGAGAAGCTTTTAACCACACCAA-CAATGTTTTTGATTCTGACCAGCTCATGT 502 Query 1152 TCAAGACATTAGGCCTCATTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAG 1211 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 CCAAGACATTAGGCATCATTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAG 562 Query 1212 AAAA-CTGCGAGAAAGTTGCTTCCGCTTCTCACTAATATCATTATCCACttttttttttt 1270 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 563 AAAAACTGCGAGAAAGTTGCTTCCGCTTCTCACTAATATCATTATCCACTTTTTTTT--- 619 Query 1271 GTTTGGAGTCGGGACACTATAGAGCA 1296 ||||||||||||||||||||| |||| Sbjct 620 GTTTGGAGTCGGGACACTATAAAGCA 645 Score = 449 bits (243), Expect = 2e-125 Identities = 285/306 (93%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 611 ATGGAAGTTTGCTGCACCTTAGGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAG 670 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAAGTTTGCTGCACCTTGGGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAA 60 Query 671 GCTGGCCTCACTGCTTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTC 730 ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCTGGATTCACTGCCTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTC 120 Query 731 ATCACTACTAGAAGTTATGACGATCGCCTTGAAACTCTTAGCCATGTTCGTGATGCTGGA 790 ||||||||||||||||||||| | ||| ||||||||||| | ||||||||||| |||||| Sbjct 121 ATCACTACTAGAAGTTATGACAACCGCTTTGAAACTCTTGGGCATGTTCGTGAAGCTGGA 180 Query 791 ATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGTGAGGCAGAGGAAGACAGAATAGGT 850 ||||| || |||||||| ||||||||||||||||| |||||||||||||||||| ||||| Sbjct 181 ATCAATGTCTGTTCAGGTGGAATCATAGGGCTTGGAGAGGCAGAGGAAGACAGAGTAGGT 240 Query 851 TTATTACACACGCTGGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAATGCTCTA 910 ||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 241 TTATTACACACACTAGCAACACCTCCTGCTCACCCTGAGAGTGTTCCCATTAATGCTCTG 300 Query 911 CTTGCA 916 |||||| Sbjct 301 CTTGCA 306 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52831169815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5