BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43430.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483453 jgi|Araly1|483453|fgenesh2_kg.4__2513__AT2G43430.1 2180 0.0
> Ahg483453 jgi|Araly1|483453|fgenesh2_kg.4__2513__AT2G43430.1
Length=1399
Score = 2180 bits (1180), Expect = 0.0
Identities = 1334/1405 (95%), Gaps = 24/1405 (2%)
Strand=Plus/Plus
Query 1 GTAAAAGCTGTCTCTTTAGCTCTGACGTTGTTTCCTGTCGAAGTCGCAGACTCGTCATCA 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAAAAGCTGTCTCTCTAGCTCTGACGTTGTTTCCTGTCGAAGTCGCAGACTCGTCATCA 60
Query 61 CAGCTCAGGCGAGTAATTCTGAGTTTCTTCTATCTACGCGCAATATCTCTCAAAGGAGGC 120
||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 61 CAGCTCAGGCGAGAAATTCTGGGTTTCTTCTATCTACGCGCAAAATCTCTCAAA-GAGGC 119
Query 121 CTCTTCAAAGGTACCACAATCATATCCTCTCG-TT-TCTATCT---G-AAGAATC--AG- 171
||||||||||||| ||||||||| |||||||| || ||||||| | ||||||| ||
Sbjct 120 CTCTTCAAAGGTAACACAATCATCTCCTCTCGTTTCTCTATCTGAAGAAAGAATCAGAGA 179
Query 172 --AG-A-GA-AGAGATATATAGAGGATGCCTGTGATCTCCAAAGCTTCATCTACCACCAC 226
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAGAAGGAGAGAGATATATAGAGGATGCCTGTGATCTCCAAAGCTTCATCTACCACCAC 239
Query 227 CAATTCATCGATTCCTTCGTGTTCTAGGATTGGAGGTCAGCTTTGTGTGTGGCCTGGTTT 286
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CAATTCATCGATTCCTTCGTGTTCTAGGATTGGAGGTCAGCTTTGCGTGTGGCCTGGTTT 299
Query 287 GAGACAACTTTGCCTCAGGAAAAGCTTATTATACGGAGTAATGTGGTTATTATCCATGCC 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGACAACTTTGCCTCAGGAAAAGCTTATTATACGGAGTAATGTGGTTATTATCCATGCC 359
Query 347 ACTGAAAACATTGCGTGGAGCTAGAAAAACTCTTAAGATTACTCACTTTTGTAGCATTTC 406
|||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 360 TCTGAAAACATTGCGTGGAGCTAGAAAGACCCTTAAAATTACCCACTTTTGTAGCATTTC 419
Query 407 CAACATGCCATCCTCATTAAAAATCGAACTGGTGCCCTGCAGTAAGGACAACTATGCTTA 466
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 CAATATGCCATCCTCATTAAAAATCGAACTGGTGCCCTGCAGTAAGGAAAACTATGCTTA 479
Query 467 TCTGTTGCACGATGAAGACACCGGAACAGTTGGAGTCGTTGATCCTTCTGAGGCTGCACC 526
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTTTGCATGATGAAGACACCGGAACAGTTGGAGTCGTTGATCCTTCTGAGGCTGCACC 539
Query 527 TGTTATAGAAGCATTGAGCAGGAAGAATTGGAATTTAACTTACATTTTGAATACTCATCA 586
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 540 TGTTATAGAGGCATTGAGCAGGAAAAATTGGAATCTAACTTACATTTTGAATACTCATCA 599
Query 587 TCATGATGATCACATTGGGGGGAATGCTGAATTGAAAGAAAGGTATGGCGCAAAGGTGAT 646
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCATGATGATCACATAGGGGGGAATGCTGAATTGAAAGAAAGGTATGGCGCAAAGGTGAT 659
Query 647 TGGATCAGCTGTAGATAAAGATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGA 706
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGATCAGCTGTGGATAAAGATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGA 719
Query 707 TAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGG 779
Query 767 CCATATTAGCTTCTACTTTCCCGGGTCAGCGACAATATTCACAGGAGACCTGATATATAG 826
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 780 CCATATTAGCTTCTACTTTCCCGGGTCAGCGACGATATTCACAGGGGACCTGATATATAG 839
Query 827 CTTATCCTGTGGTACCCTTTCAGAAGGTACCCCTGAGCAGATGCTTTCATCACTCCAAAA 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTATCCTGTGGTACCCTTTCAGAAGGTACCCCTGAGCAGATGCTTTCATCACTCCAAAA 899
Query 887 GATCGTGTCTCTACCAGACGATACAAATATATACTGCGGCCGTGAAAACACAGCAGGCAA 946
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GATCGTGTCTCTACCAGATGATACAAATATATACTGCGGCCGTGAAAACACAGCAGGCAA 959
Query 947 TCTCAAGTTTGCTCTATCCGTAGAACCAAAGAATGAAACTCTTCAGTCCTATGCAACTCG 1006
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 960 TCTCAAGTTTGCACTATCCGTAGAACCAAAGAATGAAACTCTTCAGTCATATGCAACCCG 1019
Query 1007 AGTCGCCCATCTTCGCAGCCAGGGGCTCCCATCGATTCCAACGACTGTCAAGGTTGAGAA 1066
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1020 AGTCGCCCATCTTCGCAGCCAGGGACTCCCATCGATTCCAACGACTGTTAAGGTCGAGAA 1079
Query 1067 AGCGTGTAACCCATTCCTCAGAATATCGAGCAAAGATATCCGAAAATCTTTAAGCATTCC 1126
||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGCATGTAACCCGTTCCTCAGAACATCGAGCAAAGATATCCGAAAATCTTTAAGCATTCC 1139
Query 1127 AGACTCAGCAACCGAAGCTGAAGCATTGCGTCGTATACAGAGAGCCAGAGATCGTTTCTG 1186
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1140 AGACTCAGCAACAGAAGCTGAAGCACTGCGTCGTATACAGAGAGCCAGAGATCGTTTCTG 1199
Query 1187 AAAACTTGGG-TATATTTTCTTATTTGTATAGAAAAATTTGCAAGTCAATCATCAGCTGC 1245
||| |||||| ||| ||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct 1200 AAAGCTTGGGGTATCTTT-CTTAATTGTATAGAAAAATTTGCAAGTCA-TCATCAGCTGC 1257
Query 1246 AAAGATCAATATTTTATATGTTTTGGGCTTTCTTCAGTTATC-ATTTGAAGTTGTGTATT 1304
|||||| |||| |||||||||||||| |||||||||||||| ||||||| | |||||||
Sbjct 1258 AAAGATTGATATGTTATATGTTTTGGGTTTTCTTCAGTTATCCATTTGAA-T-GTGTATT 1315
Query 1305 CAACACaaaaaa-aTCTAAATATTTAGTTTAAACTCAATTATTAAATTAT-GAGATTTTC 1362
||||||| |||| |||||||||| |||||| | ||||||||||||||||| |||||||||
Sbjct 1316 CAACACAGAAAACATCTAAATATGTAGTTTCA-CTCAATTATTAAATTATTGAGATTTTC 1374
Query 1363 AAGTGTAATGAATGCTTCAACATAC 1387
||||||||| ||||||||||||||
Sbjct 1375 AAGTGTAATTTATGCTTCAACATAC 1399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5