BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43520.1 Length=590 Score E Sequences producing significant alignments: (Bits) Value Ahg483464 jgi|Araly1|483464|fgenesh2_kg.4__2524__AT2G43520.1 730 0.0 > Ahg483464 jgi|Araly1|483464|fgenesh2_kg.4__2524__AT2G43520.1 Length=483 Score = 730 bits (395), Expect = 0.0 Identities = 454/483 (94%), Gaps = 2/483 (0%) Strand=Plus/Plus Query 11 TCAACTCGTGACCCGTGGTTGTCATGATAATTTCTAGACCCAACGATAAAGATAAAATAG 70 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCAAGTCGTGACCCGTGGTTGTCATGATAATTTCTAGACCCAACGATAAAGATAAAATAG 60 Query 71 TAGCATCGCACCACAACAAGTGTTGAGCATGAGTCTATATATATACACATACGTTAACTC 130 || || ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 TACCACCGCACCATAACAAGTGTTGAGCATGAGTCTATATATAAACACATACGTTAACTC 120 Query 131 CAAAGTGAAACAAAGAGATTAGAAACTACGGAGAGAAAGAGAGA-AGATATATAGCCATG 189 ||||||||||||| |||||||| ||||| |||||| ||| ||| ||| | ||||||||| Sbjct 121 CAAAGTGAAACAATTAGATTAGAGACTACAGAGAGAGAGAAAGAGAGA-AGATAGCCATG 179 Query 190 GCAATGAAGTCAGTTTCTACCTTGGCCGTTTTTGCCATCCTCTTTTTGGTTATCGTTGAA 249 |||| |||||||||||||||||||||||||| || ||||||||||||||||||| ||||| Sbjct 180 GCAACGAAGTCAGTTTCTACCTTGGCCGTTTCTGTCATCCTCTTTTTGGTTATCTTTGAA 239 Query 250 ATGCCAGAGATAAAAGCGCAAGGTAGCAAGTGTCTGAAAGAATATGGCGGTAATGTGGGT 309 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 240 ATGCCAGAGATAAAAGCGCAAGATAGCAAGTGTCTGAAAGAATATGGCGGTAATGTCGGT 299 Query 310 TTCAGCTATTGTGCGCCTAGGATATTTCCGTCATTCTGTTATCGGAACTGCCGTAAGAAT 369 ||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| Sbjct 300 TTCAGTTATTGTGCGCCTCGGATATTTCCGTCGTTCTGTTATCGAAACTGCCGTAAGAAT 359 Query 370 AAGGGCGCGAAGGGAGGTAGATGCCGTTCGGGAGGGGCAGGAGCTGGTAGTATGATATGT 429 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 360 AAGGGTGCGAAGGGAGGTAGATGCCGTTCGGGAGGGGCAGGAGCTGGTGGTATGATATGT 419 Query 430 TTATGCGACTACTGCAGCGACAAACCTTAAATCAGATCGTTAAACGTTTTAACCTCAAAC 489 |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| Sbjct 420 TTATGCGACTACTGCAGCGACAAACCTTAAATCAGATCGTTAAACGCTTTGACGTCAAAC 479 Query 490 GCA 492 ||| Sbjct 480 GCA 482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21596063374 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5