BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43540.1 Length=593 Score E Sequences producing significant alignments: (Bits) Value Ahg483465 jgi|Araly1|483465|fgenesh2_kg.4__2525__AT2G43540.1 773 0.0 > Ahg483465 jgi|Araly1|483465|fgenesh2_kg.4__2525__AT2G43540.1 Length=544 Score = 773 bits (418), Expect = 0.0 Identities = 497/536 (93%), Gaps = 2/536 (0%) Strand=Plus/Plus Query 9 AGAAAAATGGGGATATCGGGTTCAAAGCGAGTTACGACGATTCTATCTAACTCGCCCGAG 68 |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct 2 AGAAAAATGGGGATATCGGGTTCAAAGCGAGTCACGGCGATTCTATCCAACTCGCCCGAG 61 Query 69 TTTGACTCGGCTTGTGACTCAGCATACGACGAATCTCTCTCTCTTGCACAGCATGCTTTC 128 ||| ||||||||||||||||||| ||||| || ||||| ||||||||||||||| ||||| Sbjct 62 TTTAACTCGGCTTGTGACTCAGCGTACGAGGAGTCTCTTTCTCTTGCACAGCATACTTTC 121 Query 129 GCCGGAGTTCGTCCTTACCAGCTCGTCTCCGCCGCCGCCCACATCCACCGGAATCTTTCC 188 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 122 GCCGGAGTTCGTCCCTACCAGCTCGTCTCCGCCGCCGCTCACATCCACCGGAATCTTTCC 181 Query 189 GCTCTTCGTTTCCCTCTAATCACCAGATGGCTCTCTTCTCCTCCGAGTCAATCCCAAGTC 248 |||| || ||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 182 TCTCTCCGGTTCCCTCTAATCACCAGATGGGTCCCTTCTCCTCCGAGTCAATCCCAAGTC 241 Query 249 GACTCAGCTCTCCGAGTCACCGTCTCTCGAGTCACGGCGGCGGATGAGGAGGAGATCCTC 308 ||||||||||||||||||||||||||||||||| | || ||||| |||||||||||||| Sbjct 242 GACTCAGCTCTCCGAGTCACCGTCTCTCGAGTCGCAGCAGCGGAGGAGGAGGAGATCCTT 301 Query 309 GGGCAAGAGGAGTTCAA-GAAATGGGCCGTCGAGGTTTTCGCGGAAGCCGTTGTGGGAAA 367 || | ||||||||||| ||| ||||||||||||||||||| |||| || | |||||||| Sbjct 302 GGACCGGAGGAGTTCAAAGAA-TGGGCCGTCGAGGTTTTCGTGGAATCCATAGTGGGAAA 360 Query 368 CGCGAGGAAGACAATAGCGAGTCGGATTCCGTTAGGAATCGTCGGAATCGGTGGGATCGG 427 |||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 361 CGCGAGGAAGACGATAGCGAGTCGGATTCCATTAGGAATCGTTGGAATCGCTGGGATCGG 420 Query 428 CGCCGTGACTCGGTCGGGTCAAAACTTGATCGGAGCTGCGATTGGTGTGTACGCGATAGG 487 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 421 CGCGGTGACTCGGTCGGGTCAAAACTTGATCGGAGCTGCGATTGGTGTGTACGCGATTGG 480 Query 488 AGTTGCTACTTCCGTTTTTCTAAGCCTCACTGATTAGAAGAAAAGATTACGTTGTT 543 |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||| Sbjct 481 AGTTGCTACTTCGGTTTTTCTAAGCCTCTCTGATTAGAATAAAAGATTACGTTGTT 536 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21710530141 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5