BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43550.1 Length=595 Score E Sequences producing significant alignments: (Bits) Value Ahg935260 jgi|Araly1|935260|scaffold_403248.1 449 8e-126 > Ahg935260 jgi|Araly1|935260|scaffold_403248.1 Length=361 Score = 449 bits (243), Expect = 8e-126 Identities = 293/317 (92%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 28 CAATGTCCGAATACATCTCCAAAGTAAGCAATAAGCAAAGGAAAATGAAGTTTGTTTCCG 87 ||||||||| ||||||||||||||| |||||||||||||||||||||||| | ||||| Sbjct 32 CAATGTCCG-ATACATCTCCAAAGTGGGCAATAAGCAAAGGAAAATGAAGTCTATTTCCA 90 Query 88 TCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGAGGCCCCGGAGAAGATAGAAG 147 ||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 91 TCTTCCTTGTGCTGTTTCTCTTCTTCCTCGTCGTTCTTGAGGCGCCGGAGAAGATAGAAG 150 Query 148 CCAAAGACGACAAGTTCATATGTGTGGTTGAGTATGGAGGAGACGTGGGTCCAACGTTCT 207 |||| | |||||||||||||||||||||||||| || |||||||||||||| ||||||| Sbjct 151 -CAAA-A-GACAAGTTCATATGTGTGGTTGAGTACGGCGGAGACGTGGGTCCCACGTTCT 207 Query 208 GTAACCCTAAATTCTTCCCCACGTTGTGCCGTCAAAACTGCCGGAGCTTCAAAGGTGCCA 267 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 208 GTAACCCTAAGTTCTTCCCCACGTTGTGCCGTCAAAACTGCCGGAGCTTCAAAGGTGCAA 267 Query 268 AAGGCGGTAAATGCGTGAAGCAACCCAAACACAAACATATCAAGTGCTTCTGCGACTACT 327 ||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||| Sbjct 268 AAGGCGGTATATGCGTGAAGCAACCGAAACACAAACCTATCAAATGCTTCTGCGACTACT 327 Query 328 GTAAAGACGACTAGACT 344 | ||||| ||||||||| Sbjct 328 GCAAAGATGACTAGACT 344 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21786841319 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5