BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43570.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902367 jgi|Araly1|902367|Al_scaffold_0004_3017 1308 0.0
Ahg346169 jgi|Araly1|346169|fgenesh1_pg.C_scaffold_4002511 632 1e-180
> Ahg902367 jgi|Araly1|902367|Al_scaffold_0004_3017
Length=843
Score = 1308 bits (708), Expect = 0.0
Identities = 795/836 (95%), Gaps = 10/836 (1%)
Strand=Plus/Plus
Query 32 GCTAAACCCACATCACGAAATGACCGATTTGC-CCTTTTCTTCATAACCCTAATT-TTCC 89
|||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||
Sbjct 13 GCTAAACCCACATCACGAAATGACCGATTTGCTCCTTTTC-TCACAACCCT-ATTGTTCC 70
Query 90 TGATCCTAACCGTTTCCAAACCGGTCGCCTCTCAAAACTGTGGCTGCGCCTCTGACTTCT 149
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 71 TAATCCTAACCGTTTCCAAACCGGTCGCCTCTCAGAACTGTGGCTGCGCCTCTGACTTCT 130
Query 150 GTTGCAGCAAATATGGCTACTGTGGTACGACCGATGAGTTCTGCGGCGAGGGCTGCCAGG 209
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 131 GTTGCAGTAAATATGGCTACTGTGGTACGACCGATGAGTTCTGCGGCGACGGCTGCCAGG 190
Query 210 CAGGACCTTGCCGGAGCAGTGG-AGGCGGTGGAGATCCTGCTGTTTCACTAGAAGGAACG 268
|||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||
Sbjct 191 CAGGACCTTGCCGGAGTGGTGGCA-GCGGTGGAGATCCTGCTGTTTCACTTGAAGGAACG 249
Query 269 GTGACACCTGACTTCTTTAACTCTATACTAAACCAAAGAGGTGATTGTCCTGGCAAAGGA 328
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 250 GTGACACCTGACTTCTTTAACTCTATACTAAACCAAAGAGGTGATTGTCCAGGTAAAGGA 309
Query 329 TTCTACACTCACGACACCTTCATGGCCGCAGCTAATTCTTACCCTAGCTTCGGTGCTTCC 388
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 310 TTCTACACTCACGACACCTTCATCGCCGCAGCTAATTCTTACCCTAGCTTCGGTGCTTCC 369
Query 389 ATCTCCAAACGCGAAATCGCGGCGTTTTTCGCTCACGTAGCCCAAGAAACAGGGTTCATG 448
|||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 370 ATCTCCAAACGCGAAATCGCTGCCTTTTTCGCTCACGTAGCCCAAGAAACAGAGTTCATG 429
Query 449 TGTTACATTGAGGAAATTGATGGACCAGCCAAGGCCGCATCCGGAGAGTACTGCGACACA 508
|| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 430 TGCTACATTGAGGAAATTGGTGGACCAGCAAAGGCCGCAGCCGGAGAGTACTGCGACACA 489
Query 509 GA-GAAACCAGAGTTCCCATGTGCACAAGGAAAGGGCTACTATGGCCGTGGTGCAATCCA 567
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 490 -ACTAAACCAGAGTTCCCATGTGCACAAGGAAAGGGCTACTATGGTCGTGGTGCAATCCA 548
Query 568 GCTCTCTTGGAACTACAACTACGGTCTCTGTGGCAAAG-CCTTGGACGAGAACTTATTGG 626
|||||| |||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct 549 GCTCTCGTGGAACTACAACTACGGTCTCTGTGGCAGAGACC-TGAACGAGAACTTATTGG 607
Query 627 CTTCACCAGAGAAAGTTGCTCAAGACCAGGTTCTTGCCTTCAAGACCGCTTTCTGGTTCT 686
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 608 CTTCACCAGAGAAAGTGGCTCAAGACCAAGTTCTTGCCTTCAAGACCGCTTTCTGGTTCT 667
Query 687 GGACCACTAATGTTCGCACGAGTTTTAAATCGGGCTTTGGCGCAACAATCAGGGCAGTGA 746
||||||||||||||||| ||||||||||||||||||||||||| || ||||| || ||||
Sbjct 668 GGACCACTAATGTTCGCGCGAGTTTTAAATCGGGCTTTGGCGCGACCATCAGAGCTGTGA 727
Query 747 ATAGTAGGGAGTGTAGCGGAGGAGATTCTACAGCCAAAGCCGCCAACAGGATTAAGTATT 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 ATAGTAGGGAGTGTAGCGGAGGAGATTCTACAGCCAAAGCCGCCAACAGGATTAAGTATT 787
Query 807 TCCAAGACTATTGTGGCAAGCTTGGAGTTGCACCTGGAGATAACCTCACTTGTTAA 862
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 788 TCCAAGACTATTGTGGCAAGCTTGGAGTTGCACCGGGAGATAACCTCACTTGTTAA 843
> Ahg346169 jgi|Araly1|346169|fgenesh1_pg.C_scaffold_4002511
Length=861
Score = 632 bits (342), Expect = 1e-180
Identities = 684/839 (82%), Gaps = 64/839 (8%)
Strand=Plus/Plus
Query 65 CTTTT-CTTCATAACCCTAATTTTCCTGATCCTAACCGTTTCCAAACCGGTCGCCTCTCA 123
||||| | ||| ||| || || || ||||||| |||||||||||||| || | || ||
Sbjct 46 CTTTTGC-TCACAACTCTCCTTGTCTTGATCCTGACCGTTTCCAAACCAGTAACTTCCCA 104
Query 124 AAACTGTGGCTGCGCCTCTGACTTCTGTTGCAGCAAATATGGCTACTGTGGTAC-GACCG 182
|||||||||||| |||||||||||||| |||||| ||| || ||||||||| | ||| |
Sbjct 105 AAACTGTGGCTGTGCCTCTGACTTCTGCTGCAGCCAATGGGGTTACTGTGGT-CAGACAG 163
Query 183 ATGAGTT-CT---GC----G--G-C--GAGGG--C-TG-CCA-G--GCA--G-GACCTTG 219
|||| || || || | | | ||||| | || | | | | | | |||| |
Sbjct 164 ATGA-TTACTGCGGCGAAGGCTGCCGTGAGGGCCCTTGTCAACGTAGTAGTGAGACC-AG 221
Query 220 C--C-G-G--AGCAGTGGAGGCGGTGGAGATCCTGCTGTTTCACTAGAAGGAACGGTGAC 273
| | | | | |||||| ||||| ||||| ||||||||| || ||||||||||||||
Sbjct 222 CGGCGGCGAAAACAGTGGCGGCGGCGGAGA---TGCTGTTTCGCTTGAAGGAACGGTGAC 278
Query 274 ACCTGACTTCTTTAACTCTATACTAAACC-A--AAGAGGTGATTGTCCTGGCAAAGGATT 330
|||||| ||||||||||||||| |||||| | ||||||||||||| | || ||||||||
Sbjct 279 ACCTGAGTTCTTTAACTCTATATTAAACCAAGCAAGAGGTGATTGTGCAGGTAAAGGATT 338
Query 331 CTACACTCACGACACCTTCATGGCCGCAGCTAATTCTTACCCTAGCTTCGGTGCTTCCAT 390
|||| ||||| | |||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 339 CTACTCTCACAATGCCTTTATGGCCGCAGCTAATTCGTACCAGAGCTTCGGTGCTTCCAT 398
Query 391 CTCCAAACGCGAAATCGCGGCGTTTTTCGCTCACGT-AGCCCAAGAAACAGGGTTCATGT 449
|||||||||||| ||||| ||||| ||||||||||| | |||| ||||||| |||||||
Sbjct 399 CTCCAAACGCGAGATCGCTGCGTTCTTCGCTCACGTCA-CCCATGAAACAGAATTCATGT 457
Query 450 GTTACATTGAGGAAATTGATGGACCAGCCAAGGCCGCATCCGGAGAGTACTGCGACACAG 509
| ||||| ||||||||||||||||||||||| |||| | || | ||||| || | |
Sbjct 458 GCTACATCGAGGAAATTGATGGACCAGCCAAAGCCG-A----GA-ACTACTGTGAGA-A- 509
Query 510 AGA-AAC-CAGAGTTCCCATGTGCACAAGGAAAGGGCTACTATGGCCGTGGTGCAATCCA 567
||| ||| |||| |||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct 510 AGACAACACAGATTTCCCATGTGCACAAGGAAAGGCCTATTATGGCCGTGGTCCAATCCA 569
Query 568 GCTCTCTTGGAACTACAACTACGGTCTCTGTGGCAAAG-CCTTGGACGAGAACTTATTGG 626
||||||||||||||||||||||||||| ||||||| || ||| | |||||||||||||||
Sbjct 570 GCTCTCTTGGAACTACAACTACGGTCTTTGTGGCAGAGACCT-GAACGAGAACTTATTGG 628
Query 627 CTTCACCAGAGAAAGTTGCTCAAGA-CCAGGTTCTTGCCTTCAAGACCGCTTTCTGGTTC 685
| |||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 629 CCTCACCAGAGAAAGTGGCTCAAGATCCAG-TTCTTGCCTTCAAGACTGCTTTCTGGTTC 687
Query 686 TGGACCACTAATGTTCGCACGAGTTTTAAATC-GGGCTTTGGCGCAACAATCAGGGC-AG 743
||||||||||||||||| || ||||| || ||| |||||||| || ||||| || |
Sbjct 688 TGGACCACTAATGTTCGTGGGAAATTTAA-TCAGGGTTTTGGCGCGACGATCAGAGCTA- 745
Query 744 TGAATAGTAGGGAGTGTAGCGGAGGAGATTCTACAGCCAAAGCCGCCAACAGGATTAAGT 803
| ||| ||| ||||||||||||| ||||| || || | | |||||| |||||| |||
Sbjct 746 TAAATGGTATGGAGTGTAGCGGAAGAGATCCTGCAACT---GTCGCCAAAAGGATTGAGT 802
Query 804 ATTTCCAAGACTATTGTGGCAAGCTTGGAGTTGCACCTGGAGATAACCTCACTTGTTAA 862
||| || ||||||||||||||| ||||| || | |||||| || |||||| ||||||||
Sbjct 803 ATTACCGAGACTATTGTGGCAAACTTGGGGTCGAACCTGGCGACAACCTCTCTTGTTAA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5