BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43590.1 Length=1074 Score E Sequences producing significant alignments: (Bits) Value Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1 1692 0.0 Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1 651 0.0 Ahg935267 jgi|Araly1|935267|scaffold_403255.1 387 1e-106 Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1 359 3e-98 > Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1 Length=1031 Score = 1692 bits (916), Expect = 0.0 Identities = 995/1033 (96%), Gaps = 5/1033 (0%) Strand=Plus/Plus Query 1 CAAACAATAACACAAAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTC 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CAAACAATTACACAAAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTC 60 Query 61 TTAGGTTTCTTTTCTGAAACTGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGT 120 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTAGGTTTCTATTCTGAAACCGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGT 120 Query 121 TGCAGTCAGTTCGGTTACTGTGGTACCGACGATGCATACTGCGGTGTTGGATGCCGATCA 180 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 121 TGCAGTCAGTTCGGTTACTGTGGTACCGACGATGCATACTGCGGTGCTGGATGCCGATCA 180 Query 181 GGTCCTTGTAGAGGTAGTGGAACCCCGACCGGAGGGTCGGTCGGTAGCATTGTGACACAA 240 |||||||||||||| |||||||||||||| || || |||||||||||||||||||||||| Sbjct 181 GGTCCTTGTAGAGGCAGTGGAACCCCGACTGGTGGATCGGTCGGTAGCATTGTGACACAA 240 Query 241 GGTTTCTTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGATTCTAC 300 |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct 241 GGTTTCTTTAACAACATCATCAACCAAGCTGGTAATGGTTGCGCCGGGAAAAGATTCTAC 300 Query 301 ACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTGTTACC 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 ACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCCGTTACC 360 Query 361 AGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTAC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTAC 420 Query 421 ATAGAAGAGATTAACGGAGCAACACGTAACTACTGCCAGAGCAGCAACACACAATACCCA 480 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 421 ATAGAAGAAATTAACGGAGCATCACGTAACTACTGCCAGAGCAGCAACACACAATACCCA 480 Query 481 TGTGCACCGGGAAAAGGCTACTTCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGTGCACCGGGCAAAGGCTACTTCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540 Query 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTCGGT 600 Query 601 AGCAACCCAACTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCG 660 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 601 AGCAACCCAACTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAACACCGTAAGGCCG 660 Query 661 GTTCTGAACCAAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGT 720 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 661 GTTCTGAACCAAGGGTTTGGAGCCACCATTAGAGCCATCAATGGAATGGAATGTAACGGT 720 Query 721 GGTAATTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GGTAATTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTT 780 Query 781 GGTGTGGACCCTGGTCCTAACCTTAGTTGCTAAAAAAC-CTTTGAACCCAAACACGGACA 839 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 781 GGTGTGGACCCTGGTCCTAACCTTAGTTGCTAAAAAAAACTTTGAACCCAAACACGCACA 840 Query 840 -TATGTGACGTGGCATGTAATAAGTGAGA-TATACTAAAATTTCACACGTATGTACTTTA 897 | |||||||||||| || ||||| || | || | | |||||||||||||||||||||| Sbjct 841 CT-TGTGACGTGGCACGTGATAAG-GATAATAAATTTTAATTTCACACGTATGTACTTTA 898 Query 898 TGTCGGGTCTCGGTGTTCCCTGCGTCACAAGCAAAAAATTGTTGTAATAAACTTGTGAAA 957 ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 899 TGTCGGGTCTCAGTGTTCCCTGCGTCACAAGCAAAAAATGGTTGTAATAAACTTGTGAAA 958 Query 958 GTGATTTTCTTTTCTTATGTGACTTCTTATGAAAGAGAATTTTAAGATTGATAGATGTTT 1017 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 959 GTGATTTTCTTTTCTTATGTGACTTCTTATGGAAGTGAATTTTAAGATTGATAGATGTTT 1018 Query 1018 GAGTTTGACACTT 1030 ||||||||||||| Sbjct 1019 GAGTTTGACACTT 1031 > Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1 Length=863 Score = 651 bits (352), Expect = 0.0 Identities = 671/821 (82%), Gaps = 37/821 (5%) Strand=Plus/Plus Query 15 AAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTCTTAGGTTTCTTTTC 74 ||| |||||| |||||||||||| |||| || |||| |||| ||||||| |||||| || Sbjct 5 AAAGATGGCTCTCACAAAAATCTTCTTAATCGTTCTCCTCTCCCTCTTATGTTTCTACTC 64 Query 75 TGAAACTGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGTTGCAGTCAGTTCGG 134 |||||| ||||| |||||||||||| |||||| |||||||| ||||||||||||||||| Sbjct 65 TGAAACCGTCAAATCTCAAAACTGCAATTGCGCCCCAAACCTATGTTGCAGTCAGTTCGG 124 Query 135 TTACTGTGGTACCGACGATGC--A-TACTGCGG-TGTTGGATGCCGATCAGGTCCTTGTA 190 ||| || || ||| || ||| | ||||| || | | | |||| |||||||||||||| Sbjct 125 TTATTGCGGCACC-AC--TGCAGATTACTGTGGTTCTACG-TGCCAATCAGGTCCTTGTA 180 Query 191 GAGGT-AGTGGAACCCCGACCGGAG--GG-TCGGTCGGTAGCATTGTGACACAAGGTTTC 246 || || ||||| |||| ||||| | || | ||| |||||||||||||||||| |||| Sbjct 181 GA-GTCGGTGGACCCCCAACCGGTGCTGGTTTGGTTGGTAGCATTGTGACACAAAATTTC 239 Query 247 TTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGATTCTACACCCGT 306 |||||||| |||||||||||||| |||||||| ||||| || |||| ||| |||||||| Sbjct 240 TTTAACAACATTATCAACCAAGCCGGTAATGGCTGCGCAGGAAAAATATTTTACACCCGC 299 Query 307 GACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTGTTACCAGACGT 366 ||||||||| | |||||| | ||||||||||||| |||||| ||| | || || || ||| Sbjct 300 GACTCTTTCATAAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTCACTAGGCGT 359 Query 367 GAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTACATAGAA 426 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct 360 GAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAA 419 Query 427 GAGATTAACGGAGCAACACGTAAC-TACTGCCAGAGCAGCAACA-CA--CAATACCCATG 482 ||||| |||||||| ||||| | | ||| || ||| |||| || ||||| ||||| Sbjct 420 GAGATAAACGGAGCGTCACGTGTCATG-TGC--GACCAG-AACAACAGGCAATATCCATG 475 Query 483 TGCACCGGGAAA-AGGCTACT-TCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540 ||||||||| || || |||| | |||||||||||| ||| |||||||||||||| |||| Sbjct 476 TGCACCGGGCAAGAG-CTACCAT-GGTCGTGGTCCGCTCCTACTATCATGGAACTTCAAC 533 Query 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGT 600 || ||||| || || || ||||| || || ||||| |||||||||||||| || ||| || Sbjct 534 TATGGAGCATGCGGCCAGAGTCTTGGCCTCGACCTCCTACGCCAGCCCGAGCTGGTGAGT 593 Query 601 AGCAACCCAA-CTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCC 659 || |||||| | || ||||||||| ||| | |||||||||||||||| || || ||||| Sbjct 594 AGTAACCCAGTC-GTGGCTTTCAGGGCGGCTCTGTGGTTTTGGATGAAGAGTGTGAGGCC 652 Query 660 GGT-TCTGAACCAAGGG-TTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAAC 717 || | ||||||| ||| |||||||||||| | ||||| | | || | || ||| | Sbjct 653 TGTGT-TGAACCA-GGGATTTGGAGCCACCGTAAGAGCCGTCAGCGGTTTCGACTGTGAT 710 Query 718 GGT-GGTAA-TTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGAC 775 ||| || || || |||| || || |||||||||||||||||||||||||||||||| | Sbjct 711 GGTAGG-AACTTA-GGTGGGGTGAATGCAAGGATTGGATACTATAGAGACTATTGTGGGC 768 Query 776 AGCTTGGTGTGGACCCTGGT-CCTAACCTTAGTTGCTAAAA 815 |||||||||| |||||||| || ||| | | ||||||||| Sbjct 769 AGCTTGGTGTAGACCCTGGCGCC-AACATCACTTGCTAAAA 808 > Ahg935267 jgi|Araly1|935267|scaffold_403255.1 Length=720 Score = 387 bits (209), Expect = 1e-106 Identities = 344/407 (85%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 373 GCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTACATAGAAGAGATT 432 |||| |||||||||||||||||| |||||||||| || ||||||| ||||||| ||| | Sbjct 316 GCTAGCATGTTTGCTCATTTCACCCACGAGACCGAACGTTTCTGCAACATAGAGGAGGTA 375 Query 433 AAC-GGAGCAAC-ACGTAACTACTGCCA-GAGCAGCAACA-CACAATACCCATGTGCACC 488 ||| ||| | | | || |||| ||| | ||| | ||||| | | ||||||||||||||| Sbjct 376 AACGGGA-CGTCGA-GTGACTATTGCGACGAG-AACAACAGC-CTATACCCATGTGCACC 431 Query 489 GGGAAAAG-GCTACT-TCGGTCGTGGTCCGATCCAACTATCATGGAACTACAACTACGG- 545 ||| ||| |||||| | |||||||| ||||||||| |||||||||||||||||||||| Sbjct 432 GGG-CAAGAGCTACTAT-GGTCGTGGCCCGATCCAATTATCATGGAACTACAACTACGGC 489 Query 546 AGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGTAGCAA 605 | | |||||||| ||||||||||| ||||||||||||||||| ||||| || ||||||| Sbjct 490 A-CTTGTGGTCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCGGAACTAGTTAGTAGCAA 548 Query 606 CCCAACTGTAGCTTT-CAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTTC 664 | ||||||| ||||| || |||||| |||||||||||||||||||||||||||||||| | Sbjct 549 CTCAACTGTGGCTTTCCA-GACGGGGTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTAC 607 Query 665 TGAACCAAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGTGGTA 724 ||||| |||| |||||||||||||||||||| || |||| ||||| ||||| ||||| | Sbjct 608 TGAACAAAGGATTTGGAGCCACCATTAGAGCCATCAATGCTATGGAGTGTAATGGTGGGA 667 Query 725 ATTCCGGTGCAGTCAACGCAAGGATT-GGATACTATAGAGACTATTG 770 ||| ||||| ||||| |||||| || || ||||| | ||||||||| Sbjct 668 ATTTGGGTGCGGTCAATGCAAGGGTTAGG-TACTACACAGACTATTG 713 > Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1 Length=785 Score = 359 bits (194), Expect = 3e-98 Identities = 242/266 (91%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 551 GTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGTAGCAACCCAA 610 ||||||| || |||||||| ||||||||| ||||||| || ||||||||||||||||||| Sbjct 395 GTGGTCAGAGCCTCGGTCTCGACCTTCTAAGCCAGCCTGAGCTTGTGGGTAGCAACCCAA 454 Query 611 CTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTTCTGAACC 670 |||||||||||| || |||||||| ||||||||| ||||||||||||||||| ||||||| Sbjct 455 CTGTAGCTTTCACGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTACTGAACC 514 Query 671 AAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGTGGTAATTCCG 730 |||| ||||||||||| || ||||| || ||||| ||||||||||||||||| ||||| | Sbjct 515 AAGGATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAG 574 Query 731 GTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTTGGTGTGGACC 790 |||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||| | Sbjct 575 GTGCTGTCAACGCAAGGATTGGGTACTATAGAGACTATTGTAGACAACTTGGTGTGGATC 634 Query 791 CTGGTCCTAACCTTAGTTGCTAAAAA 816 |||||||||||||||||||||||||| Sbjct 635 CTGGTCCTAACCTTAGTTGCTAAAAA 660 Score = 285 bits (154), Expect = 5e-76 Identities = 221/253 (87%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 180 AGGTCCTTGTAGAGGTAG-TGGAACCCCGA-C-C-GGAGGGTCGGTCGGTAGCATTGTGA 235 ||||||||||| |||| | ||||||| | | | | || || || ||| |||||||||||| Sbjct 60 AGGTCCTTGTATAGGT-GTTGGAACCACTAGCTCTGGTGGATCAGTCAGTAGCATTGTGA 118 Query 236 CACAAGGTTTCTTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGAT 295 ||||||||||||||||||| |||||||||||||| |||||||| ||| || | ||||||| Sbjct 119 CACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGAT 178 Query 296 TCTACACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTG 355 | |||||||| ||||||||| || |||| ||||||| ||| ||||||||||| | ||| | Sbjct 179 TATACACCCGCGACTCTTTCATTGACGCTGCTAATAGTTTTCCCAACTTTGCTAGTTCCG 238 Query 356 TTACCAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCT 415 |||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||| Sbjct 239 TTACTAGACGTGAAATTGCTACCATGTTTGCTCATGTCACTCACGAGACCGGCCACTTCT 298 Query 416 GCTACATAGAAGA 428 ||||||||||||| Sbjct 299 GCTACATAGAAGA 311 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39990939933 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5