BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43620.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483473 jgi|Araly1|483473|fgenesh2_kg.4__2533__AT2G43620.1 1581 0.0
> Ahg483473 jgi|Araly1|483473|fgenesh2_kg.4__2533__AT2G43620.1
Length=1011
Score = 1581 bits (856), Expect = 0.0
Identities = 962/1014 (95%), Gaps = 4/1014 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACCCTAAGAGCAATGTTGAAAAACGCTTTCATCCTTTTTCTCTTCACCTTAACC 60
|||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCCCAAAGAGCAGTGTTGAAAAACGCTCTCATCCTTTTTCTCTTCACCTTAACC 60
Query 61 ATCATGGCAAAAACCGTGTTTTCGCAACAGTGCGGTACAACCGGATGTGCAGCCAACT-T 119
|| ||| ||||||||| ||||||||||| |||| ||||||||||||||||||| || | |
Sbjct 61 ATTATGTCAAAAACCGCGTTTTCGCAACGGTGCAGTACAACCGGATGTGCAGCTAA-TCT 119
Query 120 ATGTTGCAGTAGATATGGATATTGTGGCACCACAGATGCCTACTGTGGTACCGGGTGCCG 179
||| ||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 120 ATGCTGCAGCAGATATGGATATTGTGGCACCACAGCCGCCTACTGCGGTACCGGGTGCCG 179
Query 180 AAGTGGACCTTGCAGCTCCTCAACCACACCTATCCCACCAACTCCTAGCGGTGGTGCAGG 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGCGGACCTTGCAGCTCCTCAACCACACCTATCCCACCAACTCCTAGCGGTGGTGCAGG 239
Query 240 CGGTCTAAACGCTGATCCTCGTGATACAATTGAAAATGTTGTCACACCAGCATTTTTTGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGGTCTAAACGCTGATCCTCGTGATACAATTGAAAATGTTGTCACACCAGCATTTTTTGA 299
Query 300 TGGTATCATGAGCAAAGTCGGAAATGGCTGTCCAGCGAAAGGGTTCTACACTCGCCAGGC 359
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 300 TGGTATCATGAGCAAAGTCGGAAATGGCTGCCCAGCCAAAGGGTTCTACACTCGCCAGGC 359
Query 360 TTTCATTGCGGCTGCCCAATCGTTCGACGCCTATAAAGGAACCGTCGCTAAGCGTGAGAT 419
|||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 360 TTTCATCGCGGCCGCCCAATCGTTTGAGGCCTATAAAGGAACCGTCGCCAAGCGTGAGAT 419
Query 420 TGCCGCTATGTTGGCTCAGTTTTCTCATGAATCTGGAAGTTTTTGCTACAAAGAAGAAAT 479
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCCGCTATGTTGGCTCAATTCTCTCATGAATCTGGAAGTTTTTGCTACAAAGAAGAAAT 479
Query 480 AGCTAGAGGGAAATACTGCTCACCGAGCACTGCGTACCCTTGTACACCGGGAAAAGACTA 539
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 480 AGCTAGAGGGAAATACTGCTCACCGAGAACTGCATACCCTTGTACACCGGGAAAAGACTA 539
Query 540 CTACGGCCGCGGTCCAATCCAAATCACATGGAACTACAATTACGGTGCAGCTGGAAAGTT 599
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 540 CTACGGTCGCGGTCCAATCCAAATCACATGGAACTACAACTACGGTGCAGCCGGAAAGTT 599
Query 600 CCTCGGACTCCCTCTCTTGACTGATCCAGACATGGTGGCTCGTAGCCCCCAAGTTGCCTT 659
||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 600 CCTTGGACTCCCTCTATTGACTGATCCAGATATGGTGGCTCGTAGCCCACAAGTTGCCTT 659
Query 660 TCAGTGTGCCATGTGGTTCTGGAACCTAAATGTTCGTCCAGTCTTGGACCAAGGCTTTGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCAGTGTGCCATGTGGTTCTGGAACCTAAATGTTCGTCCAGTCTTGGACCAAGGCTTTGG 719
Query 720 AGCCACCACTAGGAAGATCAATGGTGGTGAATGCAACGGTAGGCGTCCTGCAGCCGTGCA 779
||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct 720 AGCCACCACTAGGAAGATCAATGGTGGCGAATGCAACGGTAGACGTCCTGCCGCGGTGCA 779
Query 780 GAGCAGAGTAAACTATTACTTGGAGTTCTGCAGGACGCTTGGGATCACTCCTGGAGCAAA 839
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 780 GAGCAGAGTAAACTATTACTTGGAGTTTTGCAGGATGCTTGGGATCACTCCTGGAACAAA 839
Query 840 TCTTAGTTGCTAAAGATGTTAAAATGTGGTTCGTATGACACGGTTTCATAGTATAAGTGT 899
||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 840 TCTTAGTTGTTAAAGATGTTAAAATGTGGT-CATATGACACGGTTTCATAGTATAAGTGT 898
Query 900 GGTCGTTCACGTGTGAGTTTATAACTAAAGGTGTCGAATAAAAAAGATTATGCGGTGTAT 959
|||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 GGTCGTGCACGTGTGACTTTATAACTAAAGGTGTCGAATAAAAA-GATTATGCGGTGTAT 957
Query 960 CCTAATGTACCAATGTGTTGTTTGAATCGGTTGTCACAGAATGAAGTATATCAG 1013
|||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 958 CCTAATGTACCAATGTGTTGTTTGTATCGGTTGTCATAGAATGAAGAATATCAG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5