BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43680.1 Length=2505 Score E Sequences producing significant alignments: (Bits) Value Ahg935279 jgi|Araly1|935279|scaffold_403267.1 2115 0.0 Ahg486435 jgi|Araly1|486435|fgenesh2_kg.5__2427__AT3G59690.1 265 1e-69 > Ahg935279 jgi|Araly1|935279|scaffold_403267.1 Length=2092 Score = 2115 bits (1145), Expect = 0.0 Identities = 1330/1417 (94%), Gaps = 22/1417 (2%) Strand=Plus/Plus Query 885 TCTTCAA-AGCCGCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 943 ||| ||| ||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 678 TCTCCAAGAGCTG-CTTCTCCAAGGGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 736 Query 944 CTCTCCAAGAGCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCAC 1003 || |||| | |||| |||| ||| ||||||||||||||||| |||||| || ||||||| Sbjct 737 TTCCCCAAAAACTGCCTCTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACCCAC 796 Query 1004 CACGCCTAGGCCTCCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCCAC 1063 |||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||| || Sbjct 797 CACGCCTAAGCCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCTAC 856 Query 1064 TACGCCTAAGCCGCCTTCTCCAAGATCAGACCCGCCAAGATTGGATGCTCCAAGACCCAC 1123 ||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||| Sbjct 857 CACGCCTAAGCCTCCTTCTCCAAGAGCAGACGCACCAAGATTGGATGCTCCAAGACCCAC 916 Query 1124 TACGCCTAAGCCCCCTTCTCCAAGATCGGTTTCTCCTAGGGCTGTGCAGCGGCGGGAGAT 1183 ||||||||||||||||||||||||| ||||||| ||||||| ||||||||| || ||| | Sbjct 917 TACGCCTAAGCCCCCTTCTCCAAGAGCGGTTTCGCCTAGGGGTGTGCAGCGACGAGAGGT 976 Query 1184 TGTTTATAGACCAGAGCCAACGCTTCCGGTCCAACATGCTTCTGCAACAAAGATTCAAGG 1243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 977 TGTTTATAGACCAGAGCCAACGCTTCCGGTCCAACATGCTTCTGCAACAAAGATTCAAGG 1036 Query 1244 AGCTTTCAGAGGTTACATGGCAAGGAAGAGTTTCAGAGCTCTCAAAGGTCTAGTCAGACT 1303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1037 AGCTTTCAGAGGTTACATGGCAAGGAAGAGTTTCAGAGCTCTCAAAGGTCTAGTCAGACT 1096 Query 1304 TCAAGGTGTGGTGAGAGGATACAGCGTGAAGCGGCAGACGATAAATGCAATGAAGTACAT 1363 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1097 TCAAGGTGTGGTGAGAGGATACAGTGTGAAGCGGCAGACGATAAATGCAATGAAGTACAT 1156 Query 1364 GCAGCAAGTGGTCCGTGTTCAATCCCAAATCCAGTCACGTCGCATCAAAATGTTGGAAAA 1423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157 GCAGCAAGTGGTCCGTGTTCAATCCCAAATCCAGTCACGTCGCATCAAAATGTTGGAAAA 1216 Query 1424 CCAAGCCCAGGTAGAGAAAGATGAAGCCAAATGGGCTGCGTCTGAAGCTGGTAATGATAA 1483 |||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||| Sbjct 1217 CCAAGCTCAGGTGGAGAAAGATGAAGCCAAATGGGGTGCATCTGAAGCTGGTAACGATAA 1276 Query 1484 TTGGGATGACAGTGTGCTGACAAAAGAGGAAAGGGATTCAAGATCACAAAGAAAGACTGA 1543 ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| Sbjct 1277 TTGGGATGACAGTGTGCTGACAAAAGAAGAAAGGGATGCAAGATCACAGAGAAAGACTGA 1336 Query 1544 CGCAATCATCAAGAGAGAAAGATCCATGGCCTATGCATATTCTCGCAAGTTGTGGAAGAA 1603 ||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 1337 CGCGATCATCAAGAGAGAAAGATCCATGGCTTATGCATATTCTCGCAAGCTGTGGAAGAA 1396 Query 1604 CAGTCCTAAGTCTACTCAGGACAATCGTTCTT----T-----CCCTCAATGGTGGAACTG 1654 |||||| ||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 1397 CAGTCCCAAGTCTACTCAGGACAATCGTTCTTCAGGTGGGTTCCCTCAATGGTGGAACTG 1456 Query 1655 GGTGGACCGGCAGAATCCTCTTGCTAGTCCTGCACCGAGCTATAGCCAACCACAAAGAGA 1714 || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1457 GGCGGACCGGCAGCATCCTCTTGCTAGTCCTGCACCGAGCTATAGCCAACCACAGAGAGA 1516 Query 1715 TTTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCTCTGTCTCAGTCAAGCAAACAACA 1774 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1517 CTTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCGCTGTCTCAGTCAAGCAAACAACA 1576 Query 1775 CCATATCAGGCTTGACAACCACTTTGACACTTCAACACCCAGATCGTCAAGATCCACTTT 1834 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 1577 CCATATCAGGCTTGACAACCACTTTGACACTTCCACACCCAGATCGTCGAGATCTACTTT 1636 Query 1835 TCACACTCCCTCCAGACCCATCCACACAGGGACATCAAGATACTCAAGAGGAAGACTAAG 1894 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1637 TCACACTCCATCCAGACCCATCCACACAGGGACATCAAGATACTCGAGAGGAAGACTAAG 1696 Query 1895 AGGTCAAGATTCTCCTTTCAAGGATGATGATAGCCTCACAAGCTGCCCTCCATTCCCTAG 1954 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1697 AGGTCAAGATTCTCCTTTCAAGGATGATGACAGCCTCACAAGCTGCCCTCCATTCCCGAG 1756 Query 1955 CTACATGGCTCCAACAGTCTCTGCCAAAG-CAAAAGTTAGACCAAACAGCAATCCAAAGG 2013 |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 1757 CTACATGGCTCCAACAGTCTCTGC-AAAGGCAAAAGTTAGACCAAACAGCAATCCAAAGG 1815 Query 2014 AGAGAGTGATGGGTACACCAGTCAGCGAGAAGAGGAGAATGTCGTATCCCCCCACGCAA- 2072 ||||||||||||||||||| || |||||||||||||||||||||| ||| |||| |||| Sbjct 1816 AGAGAGTGATGGGTACACCGGTAAGCGAGAAGAGGAGAATGTCGTTTCCTCCCATGCAAC 1875 Query 2073 --G------ATACGTTTAGATGGAACAAAGGGTCATTGGTCATGAGCAACAGCAGCAGCC 2124 | ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1876 AAGGTCTTGATACGTTTAGATGGAACAAAGGGTCATTGCTCATGAGCAACAGCAGCAGCC 1935 Query 2125 ACAGAGGTCCTGGTTCACCTGGAGGTGTGGTTCTTGAGAAGCACAAGACACTTAAATCAG 2184 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1936 ACAGAGGTCCTGGGTCACCTGGAGGTGTGGTTCTTGAGAAGCACAAGACACTTAAGTCAG 1995 Query 2185 TAGGAAATTTGAGCATTGGTTCCACTGCCTCCATGGCAACAACAGTTGGGAGAAAGGAat 2244 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1996 TAGGAAATTTGAGTATTGGTTCCACTGCCTCGATGGCAACAACAGTTGGGAGAAAGGAAT 2055 Query 2245 ttaacagatttgtgtgatttcttttgatttgaacatt 2281 ||||||||||||||||||||||||||||||||||||| Sbjct 2056 TTAACAGATTTGTGTGATTTCTTTTGATTTGAACATT 2092 Score = 1014 bits (549), Expect = 0.0 Identities = 810/927 (87%), Gaps = 53/927 (6%) Strand=Plus/Plus Query 229 GTAAGGAAAGTGATGTTGGCAA-AATGGTGAAGAAAGGAAGTTGGTTTTCTGCTATCAAA 287 ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1 GTAAGGAAAGTAATGTTGG-AATAATGGTGAAGAAAGGAAGTTGGTTTTCTGCTATCAAA 59 Query 288 AGGGTTTTTACTCCACATTCCAAAGAGAAGCTAGCCAATCAGGAACCagagagaaagagt 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AGGGTTTTTACTCCACATTCCAAAGAGAAGCTAGCCAATCAGGAACCAGAGAGAAAGAGT 119 Query 348 ggcaaagaaaagaagaagaaagGTTTTGGGAAGCTAAGGCATGGCGAGACCAATTCATTT 407 | |||||||||| |||||| || |||||||||||||||||||| ||||||||||||||| Sbjct 120 GTAAAAGAAAAGAGGAAGAAGGGGTTTGGGAAGCTAAGGCATGGAGAGACCAATTCATTT 179 Query 408 CTTCCCATCTTCAGAGAGCCTAGTAGTATCGAAAAGATCTTGGGCGAGGCTGAGAGAGAT 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTTCCCATCTTCAGAGAGCCTAGTAGTATCGAAAAGATCTTGGGCGAGGCTGAGAGAGAT 239 Query 468 CACAATCTTGTCTTCAGGCCTCCTACTCCTGATCGACCAAATCCATATTCAGCCTCTCCT 527 ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 240 CACAATCTTGTTTTCAGGCCTCCTACTCCTGATCGATCAAATCCATTTTCAGCCTCTCCT 299 Query 528 CCTCCGAGGCCTGCTTCTCCTCGGGTTGCTTC-CC-CAAGACCAACTTCTCCAAGAGTTG 585 ||| ||| | |||| || |||||| || | | | |||| || | | | Sbjct 300 CCT------CCT-C--CTCCAAGGCCTGCTTCTCCTCGGGTTC--CTTC-CCCA-A---G 343 Query 586 CCTCACCACGAGTCCCTTCTCCAAGAGCTGAAGT-TCCAAGAACC-CTTTCACCAAAGCC 643 |||| | |||||||||||| || | ||| || || | ||| |||||||| Sbjct 344 ----ACCA--A----CTTCTCCAAGAGTTG-CCTCACCACGAGCCGC-TTCTCCAAAGCC 391 Query 644 TCCTTCTCCAAGAGCTGAAGTTCCAAGATCCCTTTCACCAAAGCCTCCTTCTCCAAGAGC 703 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 392 TCCTTCTCCAAGAGCTGAAGTTCCAAGATCCCTTTCGCCAAAGCCTCCTTCTCCAAGAGC 451 Query 704 TGACCTTCCAAGATCACTTTCGCCAAAGCCCTTTGATCGATCGAAGCCATCATCAGCCTC 763 ||||||||||||||||||||||||||| | | ||||||||||||||||||| Sbjct 452 TGACCTTCCAAGATCACTTTCGCCAAA-------G--C---CGAAGCCATCATCAGCCTC 499 Query 764 TGCTAATGCCCCTCCTACTCTTAGGCCTGCTTCTACTCGAGTTCCTTCTCAGAGAATTAC 823 ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 TGCCAATG---CTCCTCCTCTTAGGCCTGCTTCTACTCGAGTTCCTTCTCAGAGAATTAC 556 Query 824 ACCTCACAGTGTTCCTTCTCCAAGACCAAGTTCACCAAGAGGTGCCTCCCCACAAGCCAT 883 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 557 CCCTCCCAGTGTTCCTTCTCCAAGACCAAGTTCACCAAGAGGTGCATCCCCACAAGCCGT 616 Query 884 CTCTTCAAAGCCGCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTCC 943 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 617 CTCTTCAAAGCCGCCTTCTCCAAGAGCTGAGCCACCAACATTGGACACTCCAAGACCTCC 676 Query 944 CTCTCCAAGAGCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCAC 1003 ||||||||||||||||||| ||| ||||| ||||||| |||||| || || |||| | Sbjct 677 TTCTCCAAGAGCTGCTTCTCCAAGGGCAGAGCCACCAACATTGGACACTCCAAGACCT-C 735 Query 1004 CA-CGCCTAGGCCT-CCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCC 1061 | | || | || ||| ||||| |||||| |||||||||| ||||||||| ||||| Sbjct 736 CTTCCCCAAAAACTGCCT-CTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACCC 794 Query 1062 ACTACGCCTAAGCCGCCTTCTCCAAGATCAGACCCGCCAAGATTGGATGCTCCAAGACCC 1121 || ||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||| Sbjct 795 ACCACGCCTAAGCCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCT 854 Query 1122 ACTACGCCTAAGCCCCCTTCTCCAAGA 1148 || ||||||||||| |||||||||||| Sbjct 855 ACCACGCCTAAGCCTCCTTCTCCAAGA 881 Score = 217 bits (117), Expect = 4e-55 Identities = 170/195 (87%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 896 GCCTTCTCCAAGAGCAGAGCCACCAACATTGGACACTCCAAGACCTC-CCTCTCC-AAGA 953 ||| |||||||| ||||| ||||||| ||| || |||||||||| | || | || ||| Sbjct 750 GCC-TCTCCAAGGGCAGACCCACCAAGATTCGATGCTCCAAGACC-CACCACGCCTAAG- 806 Query 954 GCTGCTTCTCTAAGAGCAGACCCACCAAGATTGGATGCTGCACGACCCACCACGCCTAGG 1013 || |||||| |||||||||| ||||||||||||||||| || |||| |||||||||| | Sbjct 807 CCTCCTTCTCCAAGAGCAGACACACCAAGATTGGATGCTCCAAGACCTACCACGCCTAAG 866 Query 1014 CCTCCTTCTCCACTAGCAGACGCACCAAGATTGGATGCTCCACGACCCACTACGCCTAAG 1073 |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 867 CCTCCTTCTCCAAGAGCAGACGCACCAAGATTGGATGCTCCAAGACCCACTACGCCTAAG 926 Query 1074 CCGCCTTCTCCAAGA 1088 || |||||||||||| Sbjct 927 CCCCCTTCTCCAAGA 941 > Ahg486435 jgi|Araly1|486435|fgenesh2_kg.5__2427__AT3G59690.1 Length=1984 Score = 265 bits (143), Expect = 1e-69 Identities = 452/594 (76%), Gaps = 50/594 (8%) Strand=Plus/Plus Query 1716 TTCAGGCTAACACCATCAAGACTGTGCCCAAGTCCTCTGTCTCAGTCAAGCAAACAACAC 1775 ||||||||||||||| || ||| | ||||||| |||| | |||| || |||| ||| || Sbjct 1209 TTCAGGCTAACACCAACACGACCGAGCCCAAGCCCTCAGCCTCAATCTAGCAGCCAAAAC 1268 Query 1776 CATATCAGGCTTGACAACCACTTT-GACACTTCAACACCCAGA-TCGTCAAGATCCAC-T 1832 ||| ||||||| |||| || ||| |||||||| ||||||| | || |||| |||||| | Sbjct 1269 CATTTCAGGCTCAACAA-CAGTTTCGACACTTCCACACCCA-ATTCATCAAAATCCACAT 1326 Query 1833 T--TT-C-ACA-CT---CCC--TC-CAGACC-CATCCACACAG--GGA-C--ATCAAGAT 1875 | || | || || ||| || || || || ||| |||| | | | ||||||| Sbjct 1327 TCGTTACTCCATCTAGACCCATTCACACTCCGCAACCATACAGTAGCAGCGTCTCAAGAT 1386 Query 1876 ACTCAAGAGGAAGACTAAGAG---GTCAAGATTCTCCTTTCAAGGATGATGATAGCCTCA 1932 ||||| ||||| || ||||| |||||||||||||| || |||||||||||||||| Sbjct 1387 ACTCACGAGGAGGAGGAAGAGCCACACAAGATTCTCCTTTTAAAGATGATGATAGCCTCA 1446 Query 1933 CAAGCTGCCCTCCATTC-C--CT--A-GCTACATGGCTCCAACAGTCTCTGCCAAAGCAA 1986 ||||||||||||||||| | || | |||||||||||||||||||||| || ||||||| Sbjct 1447 CAAGCTGCCCTCCATTCTCAGCTCCAAGCTACATGGCTCCAACAGTCTCAGCTAAAGCAA 1506 Query 1987 AAGTTAGACCAAACAGCAATCCAAAGGAGAGAGTG-ATGGGTACACCAGTCAGCGAGAAG 2045 || | ||| ||||||| |||| |||||||||| || | | |||||| |||||| | || Sbjct 1507 AACTAAGAGCAAACAGTAATCTAAAGGAGAGAATGGACCG-TACACCGGTCAGC-ACAA- 1563 Query 2046 AGGAGAAT-GTCGTA-TCCCC-CCACGCAAGATACGTTTA-GATGGAACAAAGGGTCATT 2101 | ||||| | || | | | || | | | | |||| | | ||||||||||||||||| Sbjct 1564 ACGAGAAGAGACGGAGTTCGTTCC-CTCTTGGTTCGTTCAAG-TGGAACAAAGGGTCATT 1621 Query 2102 GGTCATGAGCAACAGCAGCAGCCACAGAGG-TCCTGGTTCA-C--CTGGAGGTG-TGGT- 2155 | ||||||||| || ||| | | ||| ||| ||| ||||| | || |||| || | Sbjct 1622 GTTCATGAGCAGCAACAGTAACAACA-AGGGTCCAGGTTCTTCTTCTTCTGGTGCTGTTG 1680 Query 2156 T-CTTGAGAAGCACAAGACACTTAAATCAGTAGGAAATTTGAGCATTGGTTCCACTGCCT 2214 | |||||||||||||| || || ||||| || ||||||||||| |||| ||| || | | Sbjct 1681 TGCTTGAGAAGCACAAAACCCTCAAATCCGTTGGAAATTTGAGTATTGATTCTACGGTTT 1740 Query 2215 CCATGGCAACAACAGTTGGGAGAAAGGAatttaacagatttgtgtgatttcttt 2268 | ||| | ||||| ||||||| | || ||||||||||||| ||||||| ||| Sbjct 1741 CGATGCCTGCAACAATTGGGAGGAGGGCTTTTAACAGATTTGCGTGATTT-TTT 1793 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94425717355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5