BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43710.2
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935283 jgi|Araly1|935283|scaffold_403271.1 2082 0.0
> Ahg935283 jgi|Araly1|935283|scaffold_403271.1
Length=1246
Score = 2082 bits (1127), Expect = 0.0
Identities = 1205/1243 (97%), Gaps = 3/1243 (0%)
Strand=Plus/Plus
Query 129 ATTCA-TCATATCCAGAAATGGCTCTAAAGTTTAACCCTTTGGTGGCATCTCAGCCTTAC 187
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 3 ATTCATTCATATCCAGAAATGGCTCTAAAGCTTAACCCTTTGGTGGCATCTCAGCCCTAC 62
Query 188 AAATTCCCTTCCTCGACTCGTCCGCCAACTCCTTCTTTCAGATCTCCCAAGTTCCTCTGC 247
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 63 AAATTCCCTTCCTCGACTCGTCCGCCAACTTCTTCTTTCAGATCTCCCAAGTTCCTCTGC 122
Query 248 CTCGCTTCTTCTTCTCCGGCTCTCAGCTCCGGCCCCAAGTCA-GTTGAGAGTTTGAAGAA 306
|||||||| |||||||| ||||||||||||||| ||||| | |||||||| ||||||||
Sbjct 123 CTCGCTTCATCTTCTCCTGCTCTCAGCTCCGGCGCCAAG-GAGGTTGAGAGCTTGAAGAA 181
Query 307 ACCATTTACGCCACCCAGGGAAGTGCATGTTCAAGTCTTGCACTCCATGCCACCTCAAAA 366
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 182 GCCATTTACACCACCTAGGGAGGTGCATGTTCAAGTCTTGCACTCCATGCCACCTCAAAA 241
Query 367 GATCGAGATCTTCAAATCTATGGAAAACTGGGCCGAGGAGAACCTTCTGATTCACCTCAA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GATCGAGATCTTCAAATCTATGGAAAACTGGGCCGAGGAGAACCTTCTGATTCACCTCAA 301
Query 427 GGATGTGGAGAAGTCTTGGCAACCCCAGGATTTCTTGCCTGACCCTGCATCAGATGGGTT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GGATGTGGAGAAGTCTTGGCAACCCCAGGATTTCTTGCCTGACCCTGCATCAGATGGGTT 361
Query 487 TGAAGATCAGGTAAGAGAGTTAAGAGAGAGGGCTAGAGAGCTCCCTGATGATTACTTTGT 546
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 362 TGAAGATCAGGTAAGAGAGTTAAGAGAGAGGGCGAGAGAGCTCCCCGATGATTACTTTGT 421
Query 547 TGTTTTGGTGGGGGACATGATCACAGAAGAAGCACTTCCGACCTATCAAACTATGTTGAA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGTTTTGGTGGGGGACATGATCACAGAAGAAGCACTTCCGACCTATCAAACTATGTTGAA 481
Query 607 CACTTTGGATGGAGTTAGGGATGAAACAGGTGCTAGTCCTACTTCATGGGCTATTTGGAC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CACTTTGGATGGAGTTAGGGATGAAACAGGTGCTAGTCCTACTTCATGGGCTATTTGGAC 541
Query 667 CAGAGCTTGGACTGCAGAAGAAAACCGACATGGCGATCTTCTGAATAAATACCTTTACTT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CAGAGCTTGGACTGCAGAAGAAAACCGACATGGCGATCTTCTGAATAAATACCTTTACTT 601
Query 727 GTCTGGTCGTGTTGACATGAGGCAGATCGAAAAGACCATTCAGTACTTGATTGGATCTGG 786
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 602 GTCTGGTCGGGTGGACATGAGGCAGATCGAAAAGACCATTCAGTACTTGATTGGATCCGG 661
Query 787 AATGGATCCGCGGACAGAGAATAACCCCTACCTTGGCTTCATCTATACGTCATTCCAAGA 846
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 662 AATGGATCCGCGGACAGAGAATAATCCCTACCTTGGCTTCATCTATACTTCATTCCAAGA 721
Query 847 AAGAGCGACATTCATCTCTCACGGAAACACAGCCCGCCAAGCCAAAGAGCACGGGGACAT 906
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 722 AAGAGCGACCTTCATCTCTCATGGAAACACAGCCCGCCAAGCCAAAGAGCATGGGGATAT 781
Query 907 CAAACTAGCCCAAATATGTGGCACAATAGCTGCAGACGAGAAGCGTCATGAAACAGCATA 966
||| |||||||||||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 782 GAAATTAGCCCAAATATGTGGGACAATAGCTGCAGACGAGAAGCGTCACGAAACTGCTTA 841
Query 967 CACCAAGATAGTTGAAAAGCTCTTTGAGATTGATCCTGATGGTACTGTCATGGCTTTTGC 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CACCAAGATAGTTGAAAAGCTCTTTGAGATTGATCCTGATGGTACTGTCATGGCTTTTGC 901
Query 1027 AGACATGATGAGAAAGAAAATCTCAATGCCTGCTCACTTGATGTATGATGGGCGCAACGA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AGACATGATGAGAAAGAAAATCTCAATGCCTGCTCACTTGATGTATGATGGGCGCAACGA 961
Query 1087 CAACCTCTTTGACAACTTCTCTTCCGTGGCTCAGAGGCTCGGTGTTTACACCGCCAAAGA 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CAACCTCTTTGACAACTTCTCTTCCGTGGCTCAGAGGCTCGGTGTTTACACCGCCAAAGA 1021
Query 1147 CTATGCAGACATTCTTGAGTTTCTGGTTGGTAGGTGGAAAATCCAGGACTTAACCGGGCT 1206
|||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1022 CTATGCCGACATTCTTGAGTTTTTGGTTGGTAGGTGGAAAATTCAGGACTTAACCGGGCT 1081
Query 1207 TTCAGGTGAAGGAAACAAAGCACAAGACTATTTATGCGGGTTGGCTCCAAGGATCAAGAG 1266
|||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 1082 TTCAGGTGAAGGAAACAAAGCACAAGACTACTTATGCGGGTTGTCTCCAAGAATCAAGAG 1141
Query 1267 ATTGGATGAGAGAGCTCAAGCAAGAGCCAAGAAAGGACCCAAGATTCCTTTCAGTTGGAT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 ATTGGATGAGAGAGCTCAAGCAAGAGCCAAGAAAGGACCCAAGATTCCTTTCAGTTGGAT 1201
Query 1327 ACACGACAGAGAAGTGCAGCTCTAAAAGGACAAAGACAAAAAC 1369
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 ACACGACAGAGAAGTGCAGCTCTAAAAGGACAAAGACAAAAAC 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5