BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43750.1 Length=1578 Score E Sequences producing significant alignments: (Bits) Value Ahg935291 jgi|Araly1|935291|scaffold_403279.1 2250 0.0 Ahg324433 jgi|Araly1|324433|fgenesh1_pm.C_scaffold_5001977 1033 0.0 Ahg342794 jgi|Araly1|342794|fgenesh1_pg.C_scaffold_3002557 115 9e-25 > Ahg935291 jgi|Araly1|935291|scaffold_403279.1 Length=1302 Score = 2250 bits (1218), Expect = 0.0 Identities = 1275/1303 (98%), Gaps = 1/1303 (0%) Strand=Plus/Plus Query 166 tctacttctctctGTGTACAATATTCGGAAAGTGAGGAAGATACACTGAAGCAAAAGAGC 225 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTACTTC-GTCTGTGTACAATATTCGGAAAGTGAGGAAGATACACTGAAGCAAAAGAGC 59 Query 226 AAGTCATGGCGGCGACATCTTCCTCTGCTTTTCTCCTTAATCCGTTGACTTCTCGCCACC 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AAGTCATGGCGGCGACATCTTCCTCTGCTTTTCTCCTTAATCCGTTGACTTCTCGCCACC 119 Query 286 GTCCTTTCAAATACTCGCCAGAGCTCTCTTCTCTCTCCTTATCCTCTCGAAAGGCTGCTG 345 | ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 120 GACCTTTCATATACTCGCCAGAGTTCTCTTCTCTCTCCTTATCCTCTCGAAAGGCTGCTG 179 Query 346 CTTTCGATGTTTCCTCAGCTGCTTTCACGCTCAAGAGACAGAGCCGGAGTGATGTTGTGT 405 |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| Sbjct 180 CTTTCGATGTTTCCTCGGCTGCTCTCACGCTCAAGAGACAGAGCAGGAGTGATGTTGTGT 239 Query 406 GCAAGGCTGTATCTATCAAGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACG 465 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 240 GCAAGGCTGTATCTGTCAAGCCAGAAGCTGGTGTTGAAGGGCTTAATATCGCCGATAACG 299 Query 466 CCGCTCAGCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGTG 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CCGCTCAGCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGTG 359 Query 526 TTGCAAGTGTTGCTGCTAAGCTTGAGATCATGGAACCATGTTGCAGTGTCAAGGATAGGA 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTGCAAGTGTTGCTGCTAAGCTTGAGATCATGGAACCATGTTGCAGTGTCAAGGATAGGA 419 Query 586 TTGGGTACAGTATGATTACTGATGCTGAAGAGAAAGGACTTATAACACCTGGAAAGAGTG 645 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TTGGGTATAGTATGATTACTGATGCTGAAGAGAAAGGACTTATAACACCTGGAAAGAGTG 479 Query 646 TTCTTGTGGAATCTACGAGTGGGAACACAGGGATTGGCCTTGCATTCATTGCTGCTTCAA 705 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 480 TTCTTGTGGAATCTACGAGTGGAAACACAGGGATTGGCCTTGCATTCATTGCTGCTTCAA 539 Query 706 AAGGCTATAAACTTATCTTGACGATGCCTGCGTCCATGAGTTTGGAAAGGCGGGTTCTTT 765 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 540 AAGGCTATAAACTTATCTTGACGATGCCCGCATCCATGAGTTTGGAAAGGCGGGTTCTTT 599 Query 766 TGAGGGCATTTGGAGCTGAGCTTGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 825 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 600 TGAGGGCATTTGGAGCTGAGCTTGTATTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 659 Query 826 TTCAGAAGGCTGAAGAAATCTTGaaaaaaaCTCCCAATTCCTACATGCTCCAACAGTTTG 885 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 660 TTCAGAAGGCTGAAGAAATCTTGAAGAAAACTCCCAATTCCTATATGCTCCAACAGTTTG 719 Query 886 ACAACCCTGCCAATCCCAAGATTCATTATGAGACGACTGGTCCTGAGATTTGGGAAGATA 945 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 720 ACAACCCTGCCAATCCCAAGATTCATTACGAGACGACTGGTCCTGAGATCTGGGAAGATA 779 Query 946 CAAGAGGCAAAATCGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTG 1005 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CAAGAGGCAAAATTGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTG 839 Query 1006 TTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGGTTATTGGTGTCGAACCCACGG 1065 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 840 TTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGGTTATTGGTGTAGAACCCACGG 899 Query 1066 AAAGTGCTATACTTTCTGGTGGAAAACCCGGACCTCACAAGATTCAAGGAATTGGAGCTG 1125 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 900 AAAGTGCTATACTTTCTGGTGGAAAACCCGGACCTCACAAGATTCAAGGAATTGGGGCTG 959 Query 1126 GATTTGTACCCAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCGATTTCCAGTG 1185 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GATTTGTACCTAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCGATTTCCAGTG 1019 Query 1186 AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATAT 1245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATAT 1079 Query 1246 CTTCTGGAgctgctgctgctgctgcAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGA 1305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 CTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGA 1139 Query 1306 AACTCATAGCCGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCC 1365 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 AACTCATAGCTGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCC 1199 Query 1366 AGTCGATTCGAGAAGAGTGCGAGCAAATGCAGCCCGAGCTTTGATTTTCTTCTGTAATTT 1425 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 1200 AGTCGATTCGAGAAGAGTGCGAGCAAATGCAGCCTGAGCTTTGAGTTTCTTCTGTAATTT 1259 Query 1426 CGTGACCAACAAGGAACCTCTTCTTTGATTTATTGCTGATTGT 1468 ||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1260 CGTGACCAACAAGGAACCTTTTCTTCGATTTATTGCTGATTGT 1302 > Ahg324433 jgi|Araly1|324433|fgenesh1_pm.C_scaffold_5001977 Length=1314 Score = 1033 bits (559), Expect = 0.0 Identities = 845/982 (86%), Gaps = 23/982 (2%) Strand=Plus/Plus Query 433 CTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCG-CTCAGCTTATTGGGAAAACTCCG 491 |||| | ||| || ||||| ||||| ||||| | | ||||||| |||||||||||||| Sbjct 332 CTGGAGCTGATGGACTCAAGATCGCTGATAATG-TGTCTCAGCTCATTGGGAAAACTCCT 390 Query 492 ATGGTGTACTTGAACAATGTAGTC-AAGGGCTGTGTTGCAAGTGTTGCTGCTAAGCTTGA 550 ||||| |||||||| | | ||| | ||||| ||||| |||| | ||||||| || || || Sbjct 391 ATGGTCTACTTGAATAGTATAG-CAAAGGGTTGTGTAGCAAATATTGCTGCCAAACTCGA 449 Query 551 GATCATGGAACCATGTTGCAGTGTCAAGGATAGGATTGGGTACAGTATGATTACTGATGC 610 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 450 GATCATGGAGCCATGTTGCAGTGTCAAGGATAGGATTGGGTACAGTATGGTTACTGATGC 509 Query 611 TGAAG-AGAAAGGACTTATAACACCTGGAAAGAGTGTTCTTGTGGAATCTACGAGTGGGA 669 ||| | | ||||||||||| |||||||||||||||||||||||||| |||| ||||| | Sbjct 510 TGA-GCAAAAAGGACTTATCGCACCTGGAAAGAGTGTTCTTGTGGAACCTACAAGTGGAA 568 Query 670 ACACAGGG-ATTGGCCTTGCATTCATTGCTGCTTCAAAAGGCTATAAACTTATCTTGACG 728 |||| ||| |||||||| |||||||| |||||||||| |||||||| |||||||||||| Sbjct 569 ACAC-GGGTATTGGCCTAGCATTCATCGCTGCTTCAAGAGGCTATAGACTTATCTTGACA 627 Query 729 ATGCC-TGCGTCCATGAGTTTGGAAAGGCGGGTTCTTTTGAGGGCATTTGGAGCTGAGCT 787 ||||| | ||||||||||| ||||||| |||||||||| | |||||||||||||||||| Sbjct 628 ATGCCAT-CGTCCATGAGTATGGAAAGAAGGGTTCTTTTAAAGGCATTTGGAGCTGAGCT 686 Query 788 TGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAATTCAGAAGGCTGAAGAAATCTT 847 ||| ||||| || ||||| ||||| ||||||||||| ||||||||||||||||||| || Sbjct 687 TGTATTAACAGATCCTGCTAAAGGCATGACTGGAGCGGTTCAGAAGGCTGAAGAAATTTT 746 Query 848 GaaaaaaaCTCCCAATTCCTACATGCTCCAACAGTTTGACAACCCTGCCAATCCCAAGAT 907 |||||| ||||| || ||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 747 GAAAAACACTCCTGATGCCTACATGCTCCAACAGTTTGACAACCCTGCGAATCCAAAGAT 806 Query 908 TCATTATGAGACGACTGGTCCTGAGATTTGGGAAGATACAAGAGG-CAAAATCGATATAT 966 |||||| ||||| |||||||||||||| ||||||||||||| ||| ||| | ||||||| Sbjct 807 TCATTACGAGACTACTGGTCCTGAGATCTGGGAAGATACAA-AGGGCAAGGTGGATATAT 865 Query 967 TGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTGTTGGTCGATTCATTAAAGAAA 1026 | ||||| || |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 866 TTGTTGCAGGAATTGGAACTGGTGGAACTATCACTGGTGTTGGTCGATTTATTAAAGAGA 925 Query 1027 GAAAA-CCTGAATTGAAGGTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGT 1085 |||| || || | ||||||||||||| |||||||| ||||| | ||||||||||||| Sbjct 926 -AAAATCCCAAAACGCAGGTTATTGGTGTAGAACCCACCGAAAGCGATATACTTTCTGGT 984 Query 1086 GGAAAACCCGGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTG 1145 || ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 985 GGCAAACCAGGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTATACCTAAGAATTTG 1044 Query 1146 GATCTGGCTATTGTAGATGAA-TACATAGCGATTTCCAGTGAGGAAGCTATTGAAACCTC 1204 |||| | ||| | |||||| | |||||||||||| ||||| |||||||| |||||| | Sbjct 1045 GATCAGAAAATTATGGATGAAGT-CATAGCGATTTCAAGTGAAGAAGCTATAGAAACCGC 1103 Query 1205 GAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATATCTTCTGGAgctgctgctgc 1264 |||||||||||||| ||||||||||| |||| |||||||| ||||||||||||||||| Sbjct 1104 AAAGCAACTAGCTCTTAAGGAAGGCTTGATGGTCGGTATATCATCTGGAGCTGCTGCTGC 1163 Query 1265 tgctgcAATCCAGGTT-GCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCCGTT-GTG 1322 |||||||||| ||| | || ||||||||||| ||||| || ||||||||||| || ||| Sbjct 1164 TGCTGCAATC-AGGGTCGCGAAGAGACCTGAGAATGCTGGAAAACTCATAGCTGTAAGTG 1222 Query 1323 TTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAGTCGATTCGAGAAGAG 1382 || || ||||||||| || || || || |||| ||| |||||||| || || |||||| Sbjct 1223 TTTTCG--CTTCGGGGAGCGATATCTATCAACCCCGCTGTTCCAGTCTATCCGGGAAGAG 1280 Query 1383 -TGCGAGCAAATGCAGCCCGAG 1403 || ||| |||||||||| ||| Sbjct 1281 GTG-GAGAAAATGCAGCCTGAG 1301 > Ahg342794 jgi|Araly1|342794|fgenesh1_pg.C_scaffold_3002557 Length=1035 Score = 115 bits (62), Expect = 9e-25 Identities = 200/265 (75%), Gaps = 16/265 (6%) Strand=Plus/Plus Query 766 TGAGGGCATTTGGAGCTGAGCTTGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 825 ||||| | ||||| || |||||||| | ||||| || | ||||| ||| |||||| Sbjct 368 TGAGGTCCTTTGGTGCAGAGCTTGTCCTCACTGATCCAACCAAAGGAATGGGTGGAGCTG 427 Query 826 TTCAGAAGGCTGAAGAAAT-CTTGaaaaaaaCTCCCAATTCCTACATGCTCCAACAGTTT 884 || |||| ||| | ||| | |||| | | ||||| || | | ||| | ||||||||| Sbjct 428 TTAAGAAAGCTTATGAACTCCTTG-AGACTACTCCTGATGCTTTTATGTTGCAACAGTTT 486 Query 885 GACAACCCTGCCAATC-C-CAAGATTCATTATGAGACGACTGGTCCTGAGATTTGGGAAG 942 | || || | ||| | | | || |||||||||| ||||||||||||||||||||||||| Sbjct 487 AATAATCCAG-CAAACACTC-AGGTTCATTATGATACGACTGGTCCTGAGATTTGGGAAG 544 Query 943 ATACA-A-GAGGCAAAATCGATATATTGGTTGCGGGGA-TTGGAACTGGTGGAACTA-TC 998 ||||| | | || || |||||||||| || | |||| |||| ||||| || || | || Sbjct 545 ATACACATG-GG-AATGTCGATATATTCGT-GATGGGAATTGGCACTGGAGGTAC-AGTC 600 Query 999 ACTGGTGTTGGTCGAT-TCATTAAA 1022 ||||||||||| ||| || ||||| Sbjct 601 ACTGGTGTTGGGAGATATC-TTAAA 624 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59116060240 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5