BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43910.2 Length=923 Score E Sequences producing significant alignments: (Bits) Value Ahg483509 jgi|Araly1|483509|fgenesh2_kg.4__2569__AT2G43910.1 1192 0.0 Ahg902409 jgi|Araly1|902409|Al_scaffold_0004_3059 472 3e-132 > Ahg483509 jgi|Araly1|483509|fgenesh2_kg.4__2569__AT2G43910.1 Length=871 Score = 1192 bits (645), Expect = 0.0 Identities = 771/828 (93%), Gaps = 24/828 (3%) Strand=Plus/Plus Query 78 ATGGCTGAAGAACAACAAAACTCAGATCAGAGCAATGGTGGAAACGTTATTCCAACTCCT 137 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 49 ATGGCTGAAGAACAAGAAAACTCAGGTCAGAGCAATGGTGGAAACGTTATTCCAACTCCT 108 Query 138 GAAGAAGTTGCTACGTTCCTGCACAAAACTGTTGAAGAAGGTGGATGGGAAAAATGTTGG 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 109 GAAGAAGTTGCTACGTTCCTGCACAAAACTGTTGAAGAAGGTGGATGGGAAAAATGTTGG 168 Query 198 GAAGAAGAGATAACACCATGGGACCAAGGGAGAGCCACACCTCTCATTGTTCATCTTGTC 257 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 169 GAAGAAGAGATAACACCATGGGACCAAGGAAGAGCCACACCTCTCATTGTTCATCTTGTC 228 Query 258 GACACTTCCTCACTCCCACTTGGCCGTGCTCTGGTCCCCGGCTGTGGTGGAGGACACGAC 317 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 229 GACACTTCCTCACTCCCACTTGGCCGTGCTCTTGTCCCCGGCTGTGGTGGAGGACACGAC 288 Query 318 GTCGTTGCGATGGCAAGTCCTGAACGCTTCGTTGTTGGATTGGATATTTCCGAAAGCGCA 377 ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 289 GTCGTTGCGATGGCAAGCCCCGAACGTTTCGTTGTTGGATTGGATATTTCCGAAAGCGCC 348 Query 378 CTCGCGAAAGCTAATGAGACTTACGGCTCCTCACCAAAGGCAGAGTACTTTTCGTTCGTG 437 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 349 CTCACGAAAGCTAATGAGACTTACGGCTCCTCACCAAAGGCAAAGTACTTTTCGTTCGTG 408 Query 438 AAGGAAGATGTTTTCACGTGGCGTCCTA-CTGAATTATTCGACCTCATCTTCGATTATGT 496 ||||||||||||||||| |||||||||| | |||||||||||| | |||||||||||||| Sbjct 409 AAGGAAGATGTTTTCACTTGGCGTCCTAAC-GAATTATTCGACTTTATCTTCGATTATGT 467 Query 497 GTTCTTCTGTGCCATTGAACCGGAGATGAGACCTGCATGGGCTAAATCTATGTATGAACT 556 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 468 GTTCTTCTGTGCTATTGAACCGGAGATGAGACCTGCATGGGCTAAATCCATGTATGAACT 527 Query 557 CTTAAAACCTGACGGCGAACTCATAACTCTCATGTATCCGATTACCGACCACGTTGGTGG 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 CTTAAAACCTGACGGCGAACTCATAACTCTCATGTATCCGATTACCGACCACGTTGGTGG 587 Query 617 ACCTCCCTACAAAGTAGATGTCTCTACCTTCGAAGAGGTGTTGGTGCCTATAGGATTTAA 676 ||||||||||||||||||||||||||||| |||||| |||||||| || ||||||||| Sbjct 588 ACCTCCCTACAAAGTAGATGTCTCTACCTACGAAGATGTGTTGGTTCCCGCAGGATTTAA 647 Query 677 GGCAGTGTCTGTCGAGGAGAATCCTCACGCCATTCCAACTCG---GC--AAAGAGAAGCT 731 |||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||| Sbjct 648 GGCAGTGTCTGTCGAGGAGAATCCACACGCCATTCCTACTCGTAAGGGGAAAGAGAAGCT 707 Query 732 GGGAAGGTGGAAGAAGATCAATTGATCCCTAAGAAAGAGATCTTACTGTTTGGTAAGAGT 791 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 708 TGGAAGGTGGAAGAAGATCAATTGATCCCTAAGAAAGAGATCTTACTGTTTAGTAAGAGT 767 Query 792 --G-TTATATGTGTGATCTAC-AA---A-GA-G--TAAAATGATTATCT-T-CCTTTATT 838 | ||| |||||| |||||| || | || | |||||||||||||| | |||||||| Sbjct 768 ATGATTACATGTGTAATCTACCAATCTATGAAGAGTAAAATGATTATCTCTTCCTTTATT 827 Query 839 TGCTCTATGTATGTTTCAATGTTGATGATTATTATGAGTAACAATAAT 886 | |||||| ||| || |||||||||||||||| ||||||||||| Sbjct 828 TACTCTATCCATG---CA-TGTTGATGATTATTATCTGTAACAATAAT 871 > Ahg902409 jgi|Araly1|902409|Al_scaffold_0004_3059 Length=522 Score = 472 bits (255), Expect = 3e-132 Identities = 442/530 (83%), Gaps = 21/530 (4%) Strand=Plus/Plus Query 240 CTCATTGTTCATCTTGTCGACACTTCCTCACTCCCACTTGGCCGTGCTCTGGTCCCCGGC 299 |||||| | | |||| ||||| |||| | ||||| ||||||||| |||| ||||||||| Sbjct 1 CTCATTCTGCGTCTTCTCGACTCTTCAGCTCTCCCTCTTGGCCGTACTCTTGTCCCCGGC 60 Query 300 TGTGGTGGAGGACACGACGTCG-TTG--CGA-TGGCAAGTCCTGAACGCTTCGTTGTTGG 355 ||||| ||| ||| | | | ||| | | | || | || || ||||| ||||| Sbjct 61 TGTGGCGGAAGAC-TTAAAT-GCTTGTAC-ATTAACATTTTATG-TCGTTTCGTAGTTGG 116 Query 356 ATTGGATATTTCCGA-AAGCGCACTCGCGAAAGCTAATGAGACTTACGGCTCCTCACCAA 414 |||||||||||| || ||| || ||| ||||||||||||||||||||||||||||||||| Sbjct 117 ATTGGATATTTCTGATAAG-GCTCTCACGAAAGCTAATGAGACTTACGGCTCCTCACCAA 175 Query 415 AGGCAGAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACGTGGCGTCCTA-CTGAATTA 473 ||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 176 AGGCAAAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACTTGGCGTCCTAAC-GAATTA 234 Query 474 TTCGACCTCATCTTCGATTATGTGTTCTTCTGTGCCATTGAACCGGAGATGAGACCTGCA 533 |||||| | ||||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 235 TTCGACTTTATCTTCGATTATGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCA 294 Query 534 TGGGCTAAATCTATGTATGAACTCTTAAAACCTGACGGCGAACTCATAACTCTCATGTAT 593 |||| | |||| ||| |||||||| | ||||||||||| |||||||||||||| |||||| Sbjct 295 TGGGGTGAATCCATGCATGAACTCCTGAAACCTGACGGAGAACTCATAACTCTGATGTAT 354 Query 594 CCGATTACCGACCACGTTGGTGGACCTCCCTACAAAGTAGATGTCTCTACCTTCGAAGAG 653 ||||| |||||||||| |||||| ||||||||||||||| | | ||| ||| |||||| Sbjct 355 CCGATGACCGACCACGAGGGTGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGAT 414 Query 654 GTGTTGGTGCC-TATAGGATTTAAGGCAGTGTCTGTCGAGGAGAATCCTCACGCCATTCC 712 |||||||| || | |||||||||| |||||||| | |||||||| || || ||||||| Sbjct 415 GTGTTGGTTCCGT-TAGGATTTAAAGCAGTGTCCATTGAGGAGAACCCAGACTCCATTCC 473 Query 713 AACTC-GGC----AAAGAGAAGCTGG-GAAGGTGGAAGAAGATCAATTGA 756 |||| ||| ||||||||||| | || ||||||||||||| || ||| Sbjct 474 CACTCAGGCCGGCAAAGAGAAGCTTGCGA-GGTGGAAGAAGATTAACTGA 522 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34234379466 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5