BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43970.1 Length=2125 Score E Sequences producing significant alignments: (Bits) Value Ahg322062 jgi|Araly1|322062|fgenesh1_pm.C_scaffold_4002119 2423 0.0 Ahg939019 jgi|Araly1|939019|scaffold_503210.1 134 3e-30 > Ahg322062 jgi|Araly1|322062|fgenesh1_pm.C_scaffold_4002119 Length=1605 Score = 2423 bits (1312), Expect = 0.0 Identities = 1539/1642 (94%), Gaps = 41/1642 (2%) Strand=Plus/Plus Query 188 ATGGCTGATCAACAAACCCTAGATTCCTCTACTCCTCCTCCTACTCAATCCGATGATCTA 247 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 1 ATGGCTGATCAACAAACCCTAGATTCGTCTA---CTCCTCCTACTCAATCCGATGATCTA 57 Query 248 TCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCCTCAGATCCATCACTC 307 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 58 TCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCATCAGATCCATCGCTC 117 Query 308 TTGAGGTCTCTCTCCTTAAGTCGACTCAACGCCGGAGCTCCTGAGTTCGTTCCTGGTCGA 367 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TTAAGGTCTCTCTCCTTAAGTCGACTCAACGCCGGAGCTCCTGAGTTCGTTCCTGGTCGA 177 Query 368 ACTACTCCTCCGCTGCCTCAACCTCCGAGGATGATTATCCCGCCTCCTCCGCCGCACGGT 427 |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 178 ACTACTCCTCCGCTACCTCAACCTCCGAGGATGATTATCCCACCTCCTCCACCGCACGGT 237 Query 428 ATGCTTCATATGTATCACCACCAGCCTCCTTTCAATACTCCAGTTCTTGGTCCTGTTCCA 487 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 238 ATGCTTCATATGTATCACCACCAGCCTCCTTTCAATACTCCGGTTCTTGGTCCTGTTCCA 297 Query 488 ATCCAGCCACACTTGGTTCCTGTtcaaaatcaccaccctcatcatcgctttcatcagcat 547 |||||||| |||||||| ||||||||||| || || |||||||||||| || | ||| Sbjct 298 ATCCAGCCTCACTTGGTCCCTGTTCAAAACCATCATCCTCATCATCGC-TT--T---CAT 351 Query 548 catcatcacaatcgtcatcagaatcaGCAATATGTCCCGGTGAGGAATCACGGAGAGTAT 607 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 352 CATCATCACAATCGTCATCAGAATCAGCAATATGTTCCGGTGAGGAATCACGGAGATTAT 411 Query 608 CAGCAGCGTGGTGGTGTCGGTGGTGAGCAGGAACCGGATTTGGTTTCAAAGAAGAATGAT 667 ||||||| || |||||||| |||||||||||||||||| | |||||||| ||| Sbjct 412 CAGCAGC--------GT-GGTGGTGACCAGGAACCGGATTTGGTTCCGAAGAAGAACGAT 462 Query 668 CGGAGAGATCATAGTAAGAGAGAATCTAAGAACGATCAAG-TGACTGAAACTGGAGCTTC 726 ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| Sbjct 463 CGGAGAGATCATAGTAAGAGAGAATCTAAGACCGATCAAGCT-ACTGAAACTGGAGCTTC 521 Query 727 TGTTTCTATTGATTCAAAAACTGGTTTGCCTGAAGATTCTATCCAGAAGATTGTGAATCA 786 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 522 TGTTTCTATTGATTCTAAAACTGGTTTACCTGAAGATTCTATCCAGAAGATTGTGAATCA 581 Query 787 GGTTGAATACTATTTCAGTGACTTGAACTTGGCTACTACAGATCATCTCATGAGATTCAT 846 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 582 GGTTGAATACTATTTCAGTGACTTGAACTTGGCGACAACAGATCATCTCATGAGATTCAT 641 Query 847 TTGCAAGGATCCTGAAGGATATGTGCCTATTCATGTTGTTGCGTCGTTCAAGAAAATTAA 906 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 642 TTGCAAGGATCCTGAAGGATATGTGCCTATTCATGTTGTTGCATCGTTCAAGAAAATTAA 701 Query 907 AGCTGTCATTAACAATAATTCTCAGCTTGCCGCAGTGCTACAGAACTCAGCTAAGCTTTT 966 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 702 AGCTGTCATTAACAGTAATTCTCAGCTTGCCGCAGTGCTACAGAACTCAGCAAAGCTTTT 761 Query 967 TGTTAGTGAAGATGGAAAGAAAGTGAGACGCATAAGTCCGATTACTGAGTCGGCTATAGA 1026 ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| Sbjct 762 TGTTAGTGAAGATGGAAAGAAAGTGAGACGCATAAATCCGATCACTGAGTCTGCTATAGA 821 Query 1027 AGAGCTTCAGTCTCGCATTATTGTTGCTGAGAATCTCCCTGAGGATCATTGCTACCAAAA 1086 |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 822 AGAGCTCCAGTCTCGCATTATTATTGCTGAGAATCTACCTGAGGATCATTGCTACCAAAA 881 Query 1087 CCTGATGAAGATTTTTTCAACTGTTGGAAGTGTGAAGAACATCCGTACCTGCCAGCCTCA 1146 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 882 TCTGATGAAGATTTTCTCAACTGTTGGAAGTGTGAAGAACATCCGTACCTGCCAGCCACA 941 Query 1147 AAATAATGGAAGCGGTGCTCCACCCGCAGCGAGATCAGCAGCTAAAAGCGATGGTACGCT 1206 ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 942 AAATAATGGAAGCAGTGCTCCACCCGCAGCAAGATCAGCAGCCAAAAGCGATGGTACGCT 1001 Query 1207 TTTCAGTAACAAGGTCCATGCTTTTGTTGAGTATGAGATTGTTGAGCTAGCCGAGAGAGC 1266 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 1002 TTTCAGTAACAAGGTCCATGCTTTTGTTGAGTATGAGATGGTTGAACTAGCCGAGAAAGC 1061 Query 1267 AGTTACCGAGTTAAGTGAAGCGGGAAATTGGAGGAGCGGTCTTAAAGTCCGGTTGATGCT 1326 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1062 AGTTGCCGAGTTAAATGAAGCGGGAAATTGGAGGAGCGGTCTTAAAGTCCGGTTGATGCT 1121 Query 1327 AAAGCATCAGACGAAGGAACCAAAACAAGGTCAAGGGCGAGGAAGAAAAGGACATGATGC 1386 |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 AAAGAATCAGATAAAGGAACCAAAACAAGGTCAAGGGCGAGGAAGAAAAGGACATGATGC 1181 Query 1387 AGATGTAGAACATGAGGAAGATGATGCTACAACATCCGAGCAGCAGCCGATTGAGAAACA 1446 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 AGAAGTAGAACATGAGGAAGATGATGCTACAACATCCGAGCAGCAGCCGATTGAGAAACA 1241 Query 1447 ATCTGATGACTGTTCTGGGGAATGGGATACACATATGCAAGAGCAGCCAATA---GGAGA 1503 |||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1242 ATCTGAAGAGTGTTCTGGGGAATGGGATACACATATGCAAGAGCAGCCAATAATAGGAGA 1301 Query 1504 GGATCAAGGGAATGAGAAAGCGGCTGGGCAGAGAAAAGGGCGTAACAGAGGTAGAGGAAA 1563 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1302 GGATCAAGGGAATGAGAAAGCGGGTGGACAGAGAAAAGGGCGTAACAGAGGTAGAGGAAA 1361 Query 1564 GGGACGAGGACGAGGGcaaccacaccagaaccaaaaccagaacaacaaccacagccataa 1623 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1362 GGGACGAGGACGAGGTCAACCACACCAGAACCAGAACCAGAACAACAACCACAGCCA--- 1418 Query 1624 ccaaaaccacaaccacaaTGGGCGAGGAAatcatcatcatcatcatcatcatcaAGTGGG 1683 | || |||| ||||||||||| ||||||||||||||||||| | ||||| Sbjct 1419 C-AA--CCACTACCACAATGGGAGAGGAAATCATCATCATCA--A----------GTGGG 1463 Query 1684 AACACAACCTTCGAACAATCCAATGAACAACATGGAGCAACCAGGCATGGGGAAACAGCA 1743 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1464 AACACCACCTTCAAACAATCCAATGAACAACATGGAGCAACCAGGCATGGGGAAGCAGCA 1523 Query 1744 ACCACCTGGACCACGAATGCCTGATGGGACCAGAGGATTCTCAATGGGACGGGGAAAGCC 1803 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1524 ACCACCTGGACCACGAATGCCTGATGGGACGAGAGGATTCTCGATGGGACGGGGAAAGCC 1583 Query 1804 GGTTATGGTTCAGGCAGAGTGA 1825 ||| |||||||||||||||||| Sbjct 1584 GGTCATGGTTCAGGCAGAGTGA 1605 > Ahg939019 jgi|Araly1|939019|scaffold_503210.1 Length=1255 Score = 134 bits (72), Expect = 3e-30 Identities = 212/273 (78%), Gaps = 35/273 (13%) Strand=Plus/Plus Query 188 ATGGCTGATCAACAAACCCTAGATTCCTCTACTCCTCCTCCTACTCAATCCGATGATCTA 247 ||||||||||||||||||||||||| ||| || ||||| | |||||||||||| | Sbjct 22 ATGGCTGATCAACAAACCCTAGATT-CTC--CTACTCCT-C--CTCAATCCGATG----A 71 Query 248 TCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCCTCAGATCCAT-CACT 306 || | || ||| || ||| | ||| ||| ||||||||||| ||| ||| | | || Sbjct 72 TC-C-CT----CTC-AC-TCC-C-ACT-CTT---CTTCTTCTTCCCCAGCTCC-TACCCT 116 Query 307 CTTGAGGTCTCTCTCCT-TAAGTCGACTCAACGCCGGA-GCTCCTGAGTTCGTTCCTGGT 364 ||| || || |||||| | ||||| ||||| | | | ||||||||||||||||||||| Sbjct 117 CTTAAGAACTTTCTCCTCT-AGTCGCCTCAATG-CTAATGCTCCTGAGTTCGTTCCTGGT 174 Query 365 CGAACTACTCCTCCGCTGCCTCAACCTCCGAGGATGATTATCCCGCCTCCTCCGCCGCA- 423 ||||||||||| ||| ||||||| || ||||||||| ||||| ||||| || || | Sbjct 175 CGAACTACTCCGCCGTTGCCTCAGCC---GAGGATGATGATCCCACCTCCGCCTCCTCCT 231 Query 424 CGGTATGCTTCATATGTATCACCACCAGCCTCC 456 | || | ||||||||||| ||||||| ||||| Sbjct 232 CTGTTT-CTTCATATGTACCACCACCCTCCTCC 263 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79951424255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5