BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44090.1
Length=2536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483529 jgi|Araly1|483529|fgenesh2_kg.4__2589__AT2G44090.2 2684 0.0
Ahg486455 jgi|Araly1|486455|fgenesh2_kg.5__2447__AT3G59910.1 1428 0.0
> Ahg483529 jgi|Araly1|483529|fgenesh2_kg.4__2589__AT2G44090.2
Length=2248
Score = 2684 bits (1453), Expect = 0.0
Identities = 1644/1733 (95%), Gaps = 25/1733 (1%)
Strand=Plus/Plus
Query 766 TGTATTAGTTTAGATTCTATTTGGTTCTTGAGCACAGAGCATGAGTTACGGGGAATCACT 825
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 529 TGTATTAGTTTAGATTCTATTTGGTTCTTGACCACAGAGCATGAGTTACGGGGAATCACA 588
Query 826 GAATTGATTGCTAAGATCATATGTCATGGTGCTCAGGACTATACTAGAGCTACACTTAGG 885
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 589 GAATTGATTGCAAAGATCATATGTCATGGTGCTCATGACTATACTAGAGCTACACTTAGG 648
Query 886 ACTTCCTTTCTTGCTTCTTGTGTTTCATCTTGCCATAGCCGGACTGTGAGTCTTGCTGAT 945
||||| ||||| ||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 649 ACTTCGTTTCTCGCTTCATGTGTTTCATCTTGCCAGAGTCGGACTGTGAGTCTTGCTGAT 708
Query 946 ACTGTAACTGTTATGGCTCAAAGGTTGCACGAGCGTCTCCAAGAGTGTAACGGTGATGAG 1005
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 709 ACTGTAACTGTTATGGCTCAAAGGTTGCACGAGCGTCTCCAAGAGTGTAATGGTGATGAA 768
Query 1006 GTCCTCAAAGCAGAAGCTGGTGCTAAAGTTCAAAAGTTTACTGAATGGGCACTCAAATGT 1065
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 769 GTCCTCAAAGCAGAAGCTGGTGCTAAAGTTCAAAAGTTTACTGAATGGGCCCTCAAATGT 828
Query 1066 ATAGGTTTTCACTCCCGATGCCAGGGCCCTAGAGATAAAGCTAACCAAGACTCAGCTGCT 1125
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 829 ATAGGTTTTCACTCCCGATGCCAGGGTCCTAGAGATAAAGCTAACCAAGACTCAGCTGCT 888
Query 1126 GAGATCCAACTCCAGCTTTCTGCTTTCAAGATGTTCTTAGATCTTGCAGGAAACCATCTA 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGATCCAACTCCAGCTTTCTGCTTTCAAGATGTTCTTAGATCTTGCAGGAAACCATCTA 948
Query 1186 TCAGGAAAGGATTTCACAGAAGCCTTTGATGCAGCTTGCTTCCCGCTTACGCTGTTCTCT 1245
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 949 TCAGGAAAGGATTTCACAGAAGCCTTTGATGCAGCTTGCTTCCCTCTTACGCTGTTTTCT 1008
Query 1246 ACCTCGTTTAATCCTGGCTGGGCTTCTGGAATTTCAGCTACTGTCATACATGGATTGCTC 1305
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1009 ACCTCATTTAATCCCGGCTGGGCTTCTGGAATCTCAGCTACTGTCATACATGGATTGCTC 1068
Query 1306 GGTATGCTGGTGGAAGGAGGCGCAGATAATGTAAATCAGTGCTTCCTTGAAGCTTCTCGT 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GGTATGCTGGTGGAAGGAGGCGCAGATAATGTAAATCAGTGCTTCCTTGAAGCTTCTCGT 1128
Query 1366 TTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAGATTGCTCAAAGGAATAGCTTAGAC 1425
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1129 TTTGGGAGCACAGAACTTGTGCGCATCTTGTTACAGATTGCTCAAAGGAATAGCTTAGAC 1188
Query 1426 GTGGATGTTGACTTAGCCCTTGGTTTTGCCTCGCATTATAGTAAAATCGAAACGATGGAT 1485
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GTGGATGTTGACTTAGCACTGGGTTTTGCCTCGCATTATAGTAAAATCGAAACGATGGAT 1248
Query 1486 TGCCTTGTAGAAGAAGGTCATGCAATTGCTTTCTTGGGTCCCTTGATGAGAGCAGCGGAG 1545
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1249 TGCCTTGTGGAAGAAGGTCATGCCATTGCTTTCTTGGGTCCCTTGATGAGAGCAGCGGAG 1308
Query 1546 AGAGGTTGCATGCAAGTTGTTCAATGGTTTGTGAAACGAGGCTGTCGTGAAATGGAGCTA 1605
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1309 AGAGGTTGCATGCAAGTTGTTCAATGGTTTGTGAAAAAAGGCTGTCGTGAAATGGAGCTA 1368
Query 1606 TGCTTAGCTCTCACAGCCGCCACTTCAAGCAGCCAGGTTGAGGTTGCTGCTTATCTCCTT 1665
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1369 TGCTTAGCTCTCACAGCCGCCACTTCAAGCAGCCAGGTTGAGGTCGCTGCTTATCTCCTT 1428
Query 1666 CCTCATGTTCCAAGACCCGTCCTTACTGCTCTCAGCATTGAAATCCTCAAAGCAGCCGGT 1725
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1429 CCCCATGTTCCAAGACCCGTTCTCACTGCTCTCAGCATTGAAATCCTCAAAGCAGCCGGT 1488
Query 1726 GAAAGAAGTGGTGGTTCCCTCCACGGAGTAGAGTTTCTCCTTAAATCAGATTTCCTCGGG 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GAAAGAAGTGGTGGTTCCCTCCACGGAGTAGAGTTTCTCCTTAAATCAGATTTCCTCGGG 1548
Query 1786 GATCCAGCAGCCACATATTCAGTTGCAGACACCATTGCAAAGTCAGAAGACGAGTCTGTT 1845
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 GATCCAGTAGCCACATATTCAGTTGCAGACACCATTGCAAAGTCAGAAGACGAGTCTGTT 1608
Query 1846 CCTTCCGACCTCAAATCGTTTCTCCAAGAACAGTGGTCAGAAGCTGCATTCAACCAAGGA 1905
||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1609 CCTTCAGATCTCAAATCGTTTCTCCAAGAACACTGGTCAGAGGCTGCATTCAACCAAGGA 1668
Query 1906 TTGA-AGGAAAGCCGGGAAAATTACATGAATTTCATGAGAGTTTTGAAACTCGGAGAGTC 1964
|||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1669 TTGAGAG-AAAGCCGGGAAAATTTCATGAATTTCATGAGGGTTTTGAAACTCGGAGAGTC 1727
Query 1965 TGCAATAAGTCTAAAGGATCTCCCAGCACCATTGAGAGTGGCAATCGCCTACATGCCACT 2024
|||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1728 TGCAGTAAGTATAAAGGATCTCCCAGCACCATTGAGAGTAGCAATTGCCTACATGCCGCT 1787
Query 2025 GTACAGAGAGTGTGTGGATGCGGGTGGCCGGCTGCTCTCACAAAAGCTAAGAGGACAGCT 2084
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1788 GTACAGAGAGTGTGTGAATGCGGGTGGGCGGCTGCTCTCACAAAAGCTAAGGGGACAGCT 1847
Query 2085 CGTGGAAGCTGCAACACAGCTTGAAGGCTTCGATGTAGACACAGAAGAAGTAAAGAAAGG 2144
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1848 CGTGGAAGCTGTAAAACAGCTTCAAGGCTTCGATGTAGACACAGAAGAAGTAAAGAAAGG 1907
Query 2145 TCATCATCAGCTCATGACCA-TCTTGGAGCATCACCTTCCTCtttttttGGTCAAAGCTT 2203
| |||||||||| ||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 1908 TGATCATCAGCTAATGGC-AGTTTTGGAGCATCACCTTCCTCTTTTTTTGGTCAAAGCTT 1966
Query 2204 CTTTACACTGAGCAACAATGGATTCAGCATCTGAGTTAACACAACTCGTTTT---AAA-- 2258
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1967 CTTCACACTGAGCAACAATGGATTCAGCATCTGAGTTAACACAACTCGTTTTCTTAAAAA 2026
Query 2259 TAGTTGATAAAATAAGAACTGAAAAACAACCATTCCACTATAGTTAT-GGATTCTGATCC 2317
||||||| |||| |||||| ||||||||||||| |||||| |||| | ||||||||||||
Sbjct 2027 TAGTTGAAAAAACAAGAACCGAAAAACAACCATACCACTACAGTTTTTGGATTCTGATCC 2086
Query 2318 AGGTTGTGAGATGATGAAAAAGGGTTCTTGTAGACTTGTACAAACTTGCTATGAGAATGT 2377
|||| |||||||||||||||| | |||||||| | | || ||| ||||||||||||
Sbjct 2087 AGGTGGTGAGATGATGAAAAATG-TTCTTGTA--C----A-AA-CTTCCTATGAGAATGT 2137
Query 2378 CTTTGTCAAAAGTCTCTCTAT--CTGTCTTTTATGCATCCTAAACCATGGGAGAGATAAT 2435
||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 2138 CTTTGTCAA--GTCTCTCTATATCTGTCTTTTATGCATCCTAAACCATTGGAGAGATAAT 2195
Query 2436 CAAAGCCTTTTATATTATTTCATCTACATAT-T-ATTTCACTTCTTCTGTCTC 2486
|||||||||||||||||| ||||||| |||| | |||||||||||||||||||
Sbjct 2196 CAAAGCCTTTTATATTATCTCATCTATATATATTATTTCACTTCTTCTGTCTC 2248
Score = 326 bits (176), Expect = 6e-88
Identities = 418/520 (80%), Gaps = 76/520 (15%)
Strand=Plus/Plus
Query 178 GGTTTGGATGCTTCTGTTGACTACGTTTTGCTAAAATTCAGACCCTTTTCGCTCTCGTGA 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 78 GGTTTGGATGCTTCTGTTGACTACGTTTTGCTAAAATTCAGACCCTTGTCGCTCTCGTGA 137
Query 238 ATCGATTCTACCGCATTTTCTGAACGAAATCTCTAGTCTCTTTTTTCTTTTCTTCCTGGG 297
|||||||| || |||||||||| |||||||||||||||| |||||| | || |||
Sbjct 138 ATCGATTCCACAGCATTTTCTGGACGAAATCTCTAGTCT-TTTTTT-T---CT----GGG 188
Query 298 TTTGATTTCTTGGAGTGGTTGATTGCGCAAGTCTGGATT----T-TG-ATTTTGGTACAA 351
|||||||||||| ||||| ||||||||||||| |||| | || |||||||||| |
Sbjct 189 TTTGATTTCTTGAAGTGGCTGATTGCGCAAGT--GGATACAAGTCTGGATTTTGGTACGA 246
Query 352 GACATTTGCTTGTACAAGGAGGAAGGGATTTGTTGGTATACAGTATTGTTATTGCAAAGG 411
| ||||||||| ||||||||| ||||| ||| | ||| | | || ||||
Sbjct 247 GCCATTTGCTTATACAAGGAGAAAGGG-TTT-T-GGT-T----T-TT-------CAAA-- 288
Query 412 TTTTTCGAATGTCAAAACAAGTTTTTGGATTATTGATTTTGGAAATCTGAGTGGATGGAG 471
| | | ||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct 289 T-----G--T--CAAAACAAGTTTTTGGATTCTTGATTTTGGAATTCTGGGTGGATGGAG 339
Query 472 AACGATGACATGTATCCTGATGAGCCTGTAGGTTCTGACTTGGAACCTCAAGAGAGTGAT 531
|||||||||||||| || || ||||| | || || ||| |||||||
Sbjct 340 AACGATGACATGTA-CC-------CC-GTAGG-----A---GG--CC--AAGGGAGTGAT 378
Query 532 GTTGTTTTTGCAAGAGAGTCACCTCTTGTAGGTATCATCACTCAACCGACCAAATGCTCT 591
|| ||||||||||||||| |||||||| |||||| | | ||||| | ||| ||
Sbjct 379 GTGGTTTTTGCAAGAGAGGCACCTCTTATAGGTAGAA--A-TCAACATAGCAA-TG---- 430
Query 592 GGATCTACTGCAAAGATACTGAAATGCAGGGGTCTTGAG-CAACAGAAGAAGCTTAATAG 650
| ||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 431 G-ATCTAGTGCAAAGAAACTGAAATGCAGGGGTCTTG-GTCAACAGAAGAAGCTTAATAG 488
Query 651 ACAGGATAGAATCGAATTGGGACGGCTTTTCCAAGGTGCT 690
|||||||||||||||||||||||| |||||||||||||||
Sbjct 489 ACAGGATAGAATCGAATTGGGACGACTTTTCCAAGGTGCT 528
> Ahg486455 jgi|Araly1|486455|fgenesh2_kg.5__2447__AT3G59910.1
Length=2389
Score = 1428 bits (773), Expect = 0.0
Identities = 1264/1502 (84%), Gaps = 29/1502 (2%)
Strand=Plus/Plus
Query 626 TTGAGCAACAGAAGAAGCTTAATAGACAGGATAGAATCGAATTGGGACGGCTTTTCCAAG 685
||| ||| ||||| ||||||||||| || || |||||||| |||||||| || |||||||
Sbjct 600 TTGGGCAGCAGAAAAAGCTTAATAGGCAAGAAAGAATCGAGTTGGGACGACTCTTCCAAG 659
Query 686 GTGCTGTTAGCTCACAGGATTGGCAACTTTCAGAGAGATTTATTCAGCTGGCTGATCCAC 745
| ||||||| ||||| ||||||| ||||| | |||||||| |||||| ||||||||||||
Sbjct 660 GCGCTGTTACCTCACTGGATTGGGAACTTGCTGAGAGATTGATTCAGTTGGCTGATCCAC 719
Query 746 AAACTTTGAATGATCTGTTGTGTATTAGT-TTAGATTCTA-TTTGGTTCTTGAGCACAGA 803
| ||||| |||||| |||||||| || || || ||||| | ||||||||||||| ||| |
Sbjct 720 AGACTTTAAATGATTTGTTGTGTGTTGGTCTT-GATTC-AGTTTGGTTCTTGAGTACAAA 777
Query 804 GCATGAGTTAC-GGGGAATCACTGAATTGATTGCTAAGATCATATGTCATGGTGCTCAGG 862
|| |||||| | |||| ||||| | ||||||| ||||||||||||||||||||||| |
Sbjct 778 GCCTGAGTTTCAGGGG-ATCACCGGATTGATTAAGAAGATCATATGTCATGGTGCTCATG 836
Query 863 ACTATACTAGAGCTACACTTAGGACTTCCTTTCTTGCTTCTTGTGTTTCAT-CTTGCCAT 921
||| ||| || ||||| ||||||||||| ||||| ||||| ||||| || | |||||||
Sbjct 837 ACTTTACCAGGGCTACTCTTAGGACTTCGTTTCTCGCTTCATGTGTCTC-TGCTTGCCAG 895
Query 922 AGCCGGACTGTGAGTCTTGCTGATACTGTAACTGTTATGGCTCAAAGGTTGCACGAGCGT 981
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 896 AGCCGGACAATGAGTCTTGCTGATACAGTAACTGTTATGGCTCAAAGGTTGCATGAGCGT 955
Query 982 CTCCAAGAGTGTAACGGTGATGAGGTCCTCAAAGCAGAAGCTGGTGCTAAAGTTCAAAAG 1041
||||||||||| ||||| |||||| | || |||||||| |||||||| |||||||| |||
Sbjct 956 CTCCAAGAGTGCAACGGGGATGAGATTCTGAAAGCAGAGGCTGGTGCCAAAGTTCAGAAG 1015
Query 1042 TTTACTGAATGGGCACTCAAATGTATAGGTTTTCACTCCCGATGCCA-GGGCCCTAGAGA 1100
|| ||||||||||| ||||||||||||||||| |||||||||||||| ||| | || ||
Sbjct 1016 TTCACTGAATGGGCTCTCAAATGTATAGGTTTCCACTCCCGATGCCAGGGGGCAAAG-GA 1074
Query 1101 TAAAGCTAACCAAGACTCAGCTGCTGAGATCCAACTCCAGCTTTCTGCTTTCAAGATGTT 1160
|| || || |||| | |||||||||||||| |||| || ||||||||||||||||||||
Sbjct 1075 TAGAGTTAGCCAAAATTCAGCTGCTGAGATTGAACTACAACTTTCTGCTTTCAAGATGTT 1134
Query 1161 CTTAGATCTTGCAGGAAACCATCTATCAGGAAAG-GATTTCACAGAAGCCTTTGATGCAG 1219
||||||||| |||||||||||||||||||| ||| || ||||| || ||||| |||||||
Sbjct 1135 CTTAGATCTAGCAGGAAACCATCTATCAGG-AAGAGACTTCACTGAGGCCTTCGATGCAG 1193
Query 1220 CTTGCTTCCCGCTTACGCTGTTCTCTACCTCGTTTAATCCTGGCTGGGCTTCTGGAATTT 1279
|||| |||||||| || |||||||| | ||||||| ||||||||||||| |||||||| |
Sbjct 1194 CTTGTTTCCCGCTCACTCTGTTCTCCAACTCGTTTGATCCTGGCTGGGCATCTGGAATGT 1253
Query 1280 CAGCTACTGTCATACATGGATTGCTCGGTATGCTGGTGGAAGGAGGCGCAGATAATGTAA 1339
|||||||||| ||||| ||| ||||||||||||| || ||||| ||||||||||| || |
Sbjct 1254 CAGCTACTGTTATACAGGGACTGCTCGGTATGCTTGTTGAAGGTGGCGCAGATAACGTGA 1313
Query 1340 ATCAGTGCTTCCTTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGC 1399
|||| || |||||||||||||| |||||||| || ||||||||||| ||| |||| ||||
Sbjct 1314 ATCAATGTTTCCTTGAAGCTTCACGTTTTGGTAGTACAGAACTTGTCCGCGTCTTATTGC 1373
Query 1400 AGATTGCTCAAAGGAATAGCTTAGACGTGGATGTTGACTTAGCCCTTGGTTTTGCCTCGC 1459
||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||||||||
Sbjct 1374 AGATTGCGCAAAGGAACAGCTTAGATGTTGATGTGGACTTAGCTCTTGGTTTTGCCTCGC 1433
Query 1460 ATTATAGTAAAATCGAAACGATGGATTGCCTTGTAGAAGAAGGTCATGCAATTGCTTTCT 1519
||||| ||||||| | || ||| | ||||| || ||||||||| |||| ||||| ||||
Sbjct 1434 ATTATTGTAAAATAGGGACAATGAAGTGCCTAGTGGAAGAAGGTAATGCCATTGCCTTCT 1493
Query 1520 TGGGTCCCTTGATGAGAGCAGCGGAGAGAGGTTGCATGCAAGTTGTTCAATGGTTTGTGA 1579
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1494 TGGGCCCCTTAATGAGAGCAGCAGAGAGAGGTTGCATGCAAGTTGTTCAATGGTTTGTGA 1553
Query 1580 AACGAGGCTGTCGTGAAATGGAGCTATGCTTAGCTCTCACAGCCGCCACTTCAAGCAGCC 1639
|| |||| || ||||| ||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct 1554 AAAGAGGTTGCCGTGACATGGAACTTTGCTTGGCTCTAACAGCCGCCACTTCAAGTTGCC 1613
Query 1640 AGGTTGAGGTTGCTGCTTATCTCCTTCCTCATGTTCCAAGACCCGTCCTTA-CTGCTCTC 1698
| || ||||| |||||||||||||| |||| ||||||| ||| ||| ||| | ||||||
Sbjct 1614 AAGTCGAGGTCGCTGCTTATCTCCTCCCTCGTGTTCCACCACCTGTC-TTAACCGCTCTC 1672
Query 1699 AGCATTGAAATCCTCAAAGCAGCCGGTGAAAGAAGTGGTGGTTCCCTCCACGGAGTAGAG 1758
||||| ||||||||||||||||| || |||||||| || || || ||||| |||||||||
Sbjct 1673 AGCATCGAAATCCTCAAAGCAGCTGGAGAAAGAAGCGGAGGGTCTCTCCAAGGAGTAGAG 1732
Query 1759 TTTCTCCTTAAATCAGATTTCCTCGGGGAT-CCAGCAGCCACATATTCAGTTGCAGACAC 1817
|||||||| |||||||| ||| | || ||| ||| | || ||||| |||||||||||||
Sbjct 1733 TTTCTCCTCAAATCAGACTTCTTAGGAGATTCCA-CGGCTACATACTCAGTTGCAGACAG 1791
Query 1818 CATTGCAAAGTCA---GAAGACGAGTCTGTTCCTTCCGACCTCAAATCGTTTCTCCAAGA 1874
||| || | |||| |||||||| || |||||||| || || ||||| |||||||||||
Sbjct 1792 CATCGCGAGGTCATCAGAAGACGAATCCGTTCCTTCAGATCTAAAATCATTTCTCCAAGA 1851
Query 1875 ACAGTGGTCAGAAG-CTGCATTCAACCAAGGATTGA-AGGAAAGCCGGGAAAATTACATG 1932
||| ||||| || | | || || | ||||| ||| || |||||| || |||| ||||
Sbjct 1852 ACACTGGTCGGA-GTCAGCTTTTGAGAAAGGAATGAGAG-AAAGCCATGACAATTTCATG 1909
Query 1933 AATTTCATGAGAGTTTTGAAACTCGGAGAGTCTGCAATAAGTC-TAAAG-GATCTCCCAG 1990
||||||||||||||||||||| || ||||| | ||| || | ||| || || || |
Sbjct 1910 AATTTCATGAGAGTTTTGAAAAAAGGCGAGTCCCCGATA--TCCTTAAGAGACCTTCCTG 1967
Query 1991 CACCATTGAGAGTGGCAATCGCCTACATGCCACTGTACAGAGAGTGTGTGGATGCGGG-T 2049
|||| | ||||| ||||| ||||||||||| |||||||||||||| || | | ||| |
Sbjct 1968 CACCGCTAAGAGTAGCAATAGCCTACATGCCGCTGTACAGAGAGTGCATGAAAG-GGGAT 2026
Query 2050 GGCCGGCTGCTCTCACAAAAGCTAAGAGGACAGCTCGTGGAAGCTGCAACACAGCTTGAA 2109
|| ||| | || || || | ||||||||||||||| |||||||||| | ||||||| ||
Sbjct 2027 GGTCGGTTACTGTCTCAGAGGCTAAGAGGACAGCTTGTGGAAGCTGTGAGACAGCTTCAA 2086
Query 2110 GG 2111
||
Sbjct 2087 GG 2088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95606514950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5