BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44160.1
Length=2037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483539 jgi|Araly1|483539|fgenesh2_kg.4__2599__AT2G44160.1 3341 0.0
Ahg486463 jgi|Araly1|486463|fgenesh2_kg.5__2455__AT3G59970.3 1853 0.0
Ahg346222 jgi|Araly1|346222|fgenesh1_pg.C_scaffold_4002564 1256 0.0
Ahg942778 jgi|Araly1|942778|scaffold_603322.1 761 0.0
Ahg937251 jgi|Araly1|937251|scaffold_501442.1 673 0.0
> Ahg483539 jgi|Araly1|483539|fgenesh2_kg.4__2599__AT2G44160.1
Length=1953
Score = 3341 bits (1809), Expect = 0.0
Identities = 1907/1955 (98%), Gaps = 4/1955 (0%)
Strand=Plus/Plus
Query 69 TTCTTCTCCATTTCGAAAAGAAGATGAAGGTGATAGATAAGATCCAGTCATTAGCCGACG 128
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TTCTTCTCCATTTCGAAAAGAAGATGAAGGTGATAGATAAGATCCAGTCATTGGCCGACG 60
Query 129 AAGGCAAAACAGCGTTTTCCTTCGAATTCTTCCCACCAAAGACAGAAGATGGAGTCGACA 188
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 AAGGCAAAACAGCGTTTTCCTTCGAATTCTTCCCACCAAAAACAGAAGATGGAGTCGACA 120
Query 189 ATCTCTTTGAGAGAATGGATCGAATGGTTGCTTATGGTCCAACGTTTTGCGATATCACTT 248
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 121 ATCTCTTTGAGAGAATGGATCGAATGGTGGCTTATGGTCCAACGTTTTGCGATATCACAT 180
Query 249 GGGGAGCTGGTGGATCTACCGCAGATCTAACGCTTGATATAGCTTCGAGGATGCAAAACG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGGGAGCTGGTGGATCTACCGCAGATCTAACGCTTGATATAGCTTCGAGGATGCAAAACG 240
Query 309 TTGTTTGTGTTGAGAGTATGATGCATCTTACGTGTACTAACATGCCTGTTGAGAAGATTG 368
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 TTGTTTGTGTTGAGAGTATGATGCATCTTACATGTACTAACATGCCTGTTGAGAAGATTG 300
Query 369 ATCATGCTCTTGAGACTATTAGATCTAATGGGATTCAGAATGTGCTTGCTCTTAGAGGTG 428
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 ATCATGCTCTTGAGACCATTAGATCTAATGGTATTCAGAATGTGCTTGCTCTTAGAGGTG 360
Query 429 ATCCTCCTCATGGTCAAGATAAGTTTGTTCAGGTTGAAGGTGGTTTTGATTGTGCTTTGG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCCTCCTCATGGTCAAGATAAGTTTGTTCAGGTTGAAGGTGGTTTTGATTGTGCTTTGG 420
Query 489 ATCTTGTTAATCACATTCGTAGCAAGTATGGTGATTACTTTGGTATCACTGTCGCTGGTT 548
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 421 ATCTCGTTAATCACATTCGAAGCAAGTATGGTGATTACTTTGGTATCACTGTTGCTGGTT 480
Query 549 ATCCTGAGGCGCATCCTGATGTTATTGGTGAGAATGGTCTTGCGTCTAATGAAGCTTATC 608
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCCTGAGGCTCATCCTGATGTTATTGGTGAGAATGGTCTTGCGTCTAATGAAGCTTATC 540
Query 609 AGAGTGATCTTGAGTATCTGAAGAAAAAGATTGATGCTGGAGCTGATCTGATTGTTACTC 668
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGAGTGATCTTGAGTATCTCAAGAAAAAGATTGATGCTGGAGCTGATCTGATTGTTACTC 600
Query 669 AGCTTTTCTATGATACTGATATATTCCTCAAGTTTGTGAATGATTGTCGGCAAATTGGGA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGCTTTTCTATGATACTGATATATTCCTCAAGTTTGTGAATGATTGTCGGCAAATTGGGA 660
Query 729 TTAGTTGTCCCATTGTTCCTGGAATTATGCCTATTAATAACTACAGAGGCTTTTTGCGTA 788
||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 661 TTAATTGTCCCATTGTTCCTGGAATTATGCCTATTAATAACTACAGAGGGTTCTTGCGTA 720
Query 789 TGACTGGTTTCTGCAAGACTAAGATACCAGTTGAGGTGATGGCTGCCTTGGAGCCTATCA 848
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 721 TGACTGGTTTCTGCAAGACTAAGATACCAGTTGAGGTCATGGCGGCCTTGGAGCCTATCA 780
Query 849 AGGATAACGAAGAAGCTGTGAAAGCCTATGGTATTCACCTTGGAACAGAGATGTGTAAAA 908
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGGATAATGAAGAAGCTGTGAAAGCCTATGGTATTCACCTTGGAACAGAGATGTGTAAAA 840
Query 909 AGATGTTGGCTCATGGAGTCAAGTCTCTTCATCTCTACACATTGAACATGGAGAAATCTG 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 AGATGTTGGCTCATGGAGTCAAGTCTCTTCATCTCTACACATTGAACATGGAGAAATCAG 900
Query 969 CTCTTGCAATATTGATGAATCTTGGTATGATTGATGAGTCCAAAATTTCTCGTTCTTTAC 1028
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 901 CTCTTGCAATATTGATGAATCTTGGTATGATTGACGAGTCCAAAATTTCTCGTTCTTTAC 960
Query 1029 CCTGGAGACGCCCTGCAAATGTTTTCCGTACTAAGGAAGATGTGCGCCCCATTTTCTGGG 1088
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 CATGGAGACGCCCTGCAAATGTTTTCCGTAATAAGGAAGATGTGCGCCCCATTTTCTGGG 1020
Query 1089 CAAACCGTCCAAAGAGCTACATTTCTAGAACCAAGGGCTGGGAAGATTTCCCACAAGGCC 1148
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 CAAACCGTCCAAAGAGCTACATTTCTAGAACCAAGGGCTGGGAAGACTTCCCACAAGGCC 1080
Query 1149 GGTGGGGTGATTCACGCAGTGCTTCATATGGTGCACTCTCGGATCATCAGTTCTCACGTC 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGTGGGGTGATTCACGCAGTGCTTCATATGGTGCACTCTCGGATCATCAGTTCTCACGTC 1140
Query 1209 CGCGAGCACGTGACAAGAAGCTTCAACAAGAATGGGTTGTCCCACTGAAAAGTGTTGAAG 1268
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1141 CACGAGCACGAGACAAGAAGCTTGAACAAGAATGGGTTGTCCCACTGAAAAGTGTTGAAG 1200
Query 1269 ATATTCAGGAGAAATTCAAGGAGCTCTGCCTTGGAAACCTTAAAAGCAGTCCCTGGTCTG 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATATTCAGGAGAAATTCAAGGAGCTCTGCCTTGGAAACCTTAAAAGCAGTCCCTGGTCTG 1260
Query 1329 AATTAGATGGACTCCAGCCAGAGACAAGGATAATAAACGAGCAACTGATAAAAGTCAACT 1388
||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 1261 AATTAGATGGACTCCAGCCAGAGACAAAGATAATAAACGAGCAACTGGTAAAAATCAACT 1320
Query 1389 CCAAAGGCTTCTTGACCATCAATAGCCAACCATCAGTCAACGCCGAGAGATCTGATTCCC 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CCAAAGGCTTCTTGACCATCAATAGCCAACCATCAGTCAACGCCGAGAGATCTGATTCCC 1380
Query 1449 CAACTGTTGGATGGGGAGGTCCTGTTGGATATGTATACCAAAAGGCTTATCTAGAGTTCT 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CAACTGTTGGATGGGGAGGTCCTGTTGGATATGTATACCAAAAGGCTTATCTAGAGTTCT 1440
Query 1509 TCTGCTCAAAGGAGAAATTAGATGCAGTGGTGGAGAAATGCAAAGCTTTGCCATCGATTA 1568
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1441 TCTGCTCAAAGGAGAAATTAGATGCAGTGGTCGAGAAATGCAAAGCTTTGCCATCGATTA 1500
Query 1569 CTTACATGGCTGTGAACAAAGGAGAACAGTGGGTATCGAACACTGCCCAAGCTGATGTGA 1628
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1501 CTTACATGTCTGTGAACAAAGGAGAAAACTGGGTATCGAACACTGCCCAAGCTGATGTGA 1560
Query 1629 ATGCTGTAACTTGGGGAGTTTTCCCGGCTAAGGAAATCATTCAACCAACCATTGTCGATC 1688
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 ATGCTGTTACTTGGGGAGTTTTCCCGGCTAAGGAAATCATTCAACCAACCATTGTCGATC 1620
Query 1689 CCGCTAGCTTCAACGTCTGGAAGGATGAAGCATTTGAGACTTGGTCAAGAAGCTGGGCTA 1748
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CCGCTAGCTTCAAAGTCTGGAAGGATGAAGCATTTGAGACTTGGTCAAGAAGCTGGGCTA 1680
Query 1749 ACTTGTACCCAGAAGCCGACCCTTCCAGAAACTTGCTCGAGGAGGTGAAGAACAGCTACT 1808
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ACTTGTATCCAGAAGCTGACCCTTCCAGAAACTTGCTCGAGGAGGTGAAGAACAGCTACT 1740
Query 1809 ATTTGGTAAGCTTGGTGGAGAACGATTACATCAATGGTGACATATTCGCGGTGTTTGCTG 1868
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1741 ATTTGGTAAGCTTGGTGGAGAACGATTACATCAATGGTAACATATTCGCGGTCTTTGCTG 1800
Query 1869 ATCTTTGAGAAAATCAAGAGACAACT-ACAGTATATCGGTTTCCTACTGCTTTCAAGATT 1927
|| |||||||||||||||| ||| || ||||||||||||||||||||| |||||||||||
Sbjct 1801 ATATTTGAGAAAATCAAGAAACA-CTTACAGTATATCGGTTTCCTACTACTTTCAAGATT 1859
Query 1928 TGCTTTTGTACTTTCTCTAAAATATTGGGATTTTGTTTTTTACATCTGTCTACCATAACA 1987
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1860 TGCTTTTGTACTTTCTCTAAAATATTGGGATTTTGGTTTTTACATCTGTCTACCATAACA 1919
Query 1988 GTATTGATGTG-CAAGTAATGTTATTGATAAAAAG 2021
|||||||||| || ||||||||||||||||||||
Sbjct 1920 ATATTGATGTGGCA-GTAATGTTATTGATAAAAAG 1953
> Ahg486463 jgi|Araly1|486463|fgenesh2_kg.5__2455__AT3G59970.3
Length=2031
Score = 1853 bits (1003), Expect = 0.0
Identities = 1563/1833 (85%), Gaps = 40/1833 (2%)
Strand=Plus/Plus
Query 73 TCTCCATTTCGAAAAGA-AGATGAAGGTGATAGATAAGATCCAGT-CATTAGCCGACG-A 129
||| |||||||| || | ||||||||| | ||||||||| | | | | | | || | |
Sbjct 75 TCT-CATTTCGATTCGACA-ATGAAGGTGGTTGATAAGATCAAATCCGTGA-CGGA-GCA 130
Query 130 AGGCAAAACAGCGTTT-TCCTTCGAATTCTTCCCACCAAAGACAGAAGATGGAGTCGACA 188
|||| ||||||| ||| |||||||| || |||||||| ||||| || ||||| ||||| |
Sbjct 131 AGGCCAAACAGC-TTTCTCCTTCGAGTTTTTCCCACCCAAGACGGAGGATGGCGTCGAGA 189
Query 189 ATCTCTTTGAGA-GAATGGATCGAATGGT-TGCTTATGGTCCAACGTTTTGCGATATCAC 246
|||||||||| | ||||||||||| |||| | ||||||| || || || |||||||||||
Sbjct 190 ATCTCTTTGA-ACGAATGGATCGATTGGTCT-CTTATGGACCTACCTTCTGCGATATCAC 247
Query 247 TTGGGGAGCTGGTGGATCTACCGCAGATCTAACGCTTGATATAGCTTCGAGGATGCAAAA 306
|||||| || || ||||| ||||| ||||| || || || || ||||| |||||||| ||
Sbjct 248 TTGGGGTGCCGGAGGATCCACCGCCGATCTCACTCTCGAGATCGCTTCTAGGATGCAGAA 307
Query 307 CGTTGTTTGTGTTGAGAGTATGATGCATCTTACGTGTACTAACATGCCTG-TTGAGAAGA 365
||| | || || |||| |||||||||||| || ||||| |||||||| | |||||||||
Sbjct 308 TGTTATCTGCGTCGAGACTATGATGCATCTCACTTGTACCAACATGCC-GATTGAGAAGA 366
Query 366 TTGATCATGCTCTTGAGACTATTAGATCTAATGGGATTCAGAATGTGCTTGCTCTTAGAG 425
|||| || || |||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 367 TTGACCACGCGCTTGAGACGATTAGATCTAATGGAATTCAGAATGTGCTTGCGCTTAGAG 426
Query 426 GTGATCCTCCTCATGGTCAAGATAAGTTTGTTCAGGTTGAAGGTGGTTTTGATTGTGCTT 485
| ||||| |||||||| || |||||||| |||||||||||||| || |||| ||||||||
Sbjct 427 GAGATCCGCCTCATGGACAGGATAAGTTCGTTCAGGTTGAAGGAGGATTTGCTTGTGCTT 486
Query 486 TGGATCTTGTTAATCACATTCGTAGCAAGTATGGTGATTACTTTGGTATCACTGTCGCTG 545
||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 487 TGGATCTGGTGAATCACATTCGAAGCAAGTATGGTGATTACTTTGGAATCACTGTTGCTG 546
Query 546 GTTATCCTGAGGCGCATCCTGATGTTATTGGTG-AGAATGGTCTTGCGT-CTAATGAAGC 603
||||||||||||| |||||||||||||||| | | |||| ||||| | || |||| |
Sbjct 547 GTTATCCTGAGGCTCATCCTGATGTTATTGAAGCTG-ATGGACTTGC-TACTCCTGAATC 604
Query 604 TTATCAGAGTGATCTTGAGTATCTGAAGAAAAAGATTGATGCTGGAGCTGATCTGATTGT 663
||||||||||||||||| || |||||||||||| ||||||||||||| ||| |||||||
Sbjct 605 TTATCAGAGTGATCTTGCTTACCTGAAGAAAAAGGTTGATGCTGGAGCAGATTTGATTGT 664
Query 664 TACTCAGCTTTTCTATGATACTGATATATTCCTCAAGTTTGTGAATGATTGTCGGCAAAT 723
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 665 GACTCAGCTTTTCTATGATACTGATATATTCCTCAAATTTGTGAATGATTGTCGCCAAAT 724
Query 724 TGGGATTAGTTGTCCCATTGTTCCTGGAATTATGCCTATTAATAACTAC-AGAGGCTTTT 782
||||| | ||||||||||||||||||||||||||| ||| |||||| || || || |
Sbjct 725 CGGGATAAATTGTCCCATTGTTCCTGGAATTATGCCCATTTCCAACTACAAG-GGGTTCT 783
Query 783 TGCGTATGACTGGTTTCTGCAAGACTAAGATACCAGTTGAGGTGA-TGGCTGCCTTGGAG 841
|||||||| |||||||||||||||| |||||||| | |||| | | | |||||||| |||
Sbjct 784 TGCGTATGGCTGGTTTCTGCAAGACCAAGATACCTGCTGAGCTCACT-GCTGCCTTAGAG 842
Query 842 CCTATCAAGGATAACGAAGAAGCTGTGAAAGCCTATGGTATTCACCTTGGAACAGAGATG 901
||||| |||||||| || || ||||| |||||||||||||||||| ||| |||||| |||
Sbjct 843 CCTATTAAGGATAATGACGAGGCTGTCAAAGCCTATGGTATTCACTTTGCAACAGAAATG 902
Query 902 TGTAAAAAGATGTTGGCTCATGGAGTCAAGT-CTCTTCATCTCTACACATTGAACATGGA 960
|| |||||||| ||||| |||||| || | | | |||||| | |||||||||||| ||||
Sbjct 903 TGCAAAAAGATTTTGGCCCATGGAATC-ACTACCCTTCATATTTACACATTGAACGTGGA 961
Query 961 GAAATCTGCTCTTGCAATATTGATGAATCTTGGTATGATTGATGAGTCCAAAATTTCTCG 1020
||||| ||| ||| ||||| ||||| |||||| ||||||||||||| |||||||||||
Sbjct 962 CAAATCAGCTATTGGGATATTAATGAACCTTGGTTTGATTGATGAGTCAAAAATTTCTCG 1021
Query 1021 TTCTTTACCCTGGAGACGCCCTGCAAATGTTTTCCGTACTAAGGAAGATGTGCGCCCCAT 1080
|||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1022 TTCTCTACCTTGGAGACGCCCTGCAAATGTTTTCCGTACTAAGGAAGATGTTCGCCCAAT 1081
Query 1081 TTTCTGGGCAAACCGTCCAAAGAGCTACATTTCTAGAACCAAGGGCTGGGAA-GATTTCC 1139
|||||||||||| |||||||||||||| || |||||||| ||||||||| || || ||||
Sbjct 1082 TTTCTGGGCAAATCGTCCAAAGAGCTATATATCTAGAACAAAGGGCTGG-AATGACTTCC 1140
Query 1140 CACAAGGCCGGTGGGGTGATTCACGCAGTGCTTCATATGGTGCACTCTCGGATCATCAGT 1199
|||| || || ||||||||| |||||||||| |||||| || |||| || ||| ||||||
Sbjct 1141 CACATGGACGTTGGGGTGATACACGCAGTGCATCATATAGTACACTTTCAGATTATCAGT 1200
Query 1200 TCTCACGTCCGCGAGCACGTGACAAGAAGCTTCAACAAGAATGGGTTGTCCCACTGAAAA 1259
|| |||| || ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1201 TCACACGCCCAAAAGCACGTGACAAGAAGCTTCAGCAAGAATGGGTTGTCCCATTGAAAA 1260
Query 1260 GTGTTGAAGATATTCAGGAGAAATTCAAGGAGCTCTGCCTTGGAAACCTTAAAA-GCAGT 1318
| |||||||| |||| ||||||||||| ||||||||| |||||||| |||||| |||||
Sbjct 1261 GCATTGAAGATGTTCAAGAGAAATTCAAAGAGCTCTGCATTGGAAAC-TTAAAAAGCAGT 1319
Query 1319 CCCTGGTCTGAATTAGATGGACTCCAGCCAGAGACAAGGATAATAAACGAGCAACT-GAT 1377
|| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 1320 CCATGGTCTGAATTAGATGGACTCCAGCCAGAGACAAAGATCATAAACGAGCAACTCGGG 1379
Query 1378 AAAAGTCAACTCCAAAGGCTTCTTGACCATCAATAGCCAACCATCAGTCAACGCCGAGAG 1437
|||| |||||||||| || ||| |||||||||||||||||||||||||||| || | |
Sbjct 1380 AAAA-TCAACTCCAATGGTTTCCTGACCATCAATAGCCAACCATCAGTCAATGCAGCTAA 1438
Query 1438 ATCTGATTCCCCAACTGTTGGATGGGGAGGTCCTGTTGGATATGTATACCA-AAAGGCTT 1496
||| ||||||||| || |||||||||| ||||||| ||| || || ||||| |||| |||
Sbjct 1439 ATCCGATTCCCCAGCTATTGGATGGGGTGGTCCTGGTGGTTACGTCTACCAGAAAG-CTT 1497
Query 1497 ATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGCAGTGGTGGAGAAATGCAAAGCTT 1556
|||| ||||||||||| |||||||| || ||||| || | |||||||||| ||||||||
Sbjct 1498 ATCTGGAGTTCTTCTGTTCAAAGGATAAGTTAGACACACTTGTGGAGAAATCCAAAGCTT 1557
Query 1557 TGCCATCG-ATTACTTACATGGCTGTGAACAAAGGAGA-ACAGTGGGTATCGAACACTGC 1614
| || || || || |||||||| |||||||||| ||| | | |||||||| ||||| |
Sbjct 1558 TTCC-TCTTATCACCTACATGGCCGTGAACAAAGCAGAGA-ATTGGGTATCAAACACCGA 1615
Query 1615 CCAA-GCTGATGTGAATGCTGTAACTTGGGGAGTTTTCCCGGCTAAGGAAATCATTCAAC 1673
| || ||||||||||| || ||||||||||| ||||| |||||||| | |||||||
Sbjct 1616 TGAGTGC-GATGTGAATGCAGTTACTTGGGGAGTGTTCCCAGCTAAGGAGGTTATTCAAC 1674
Query 1674 CAACCATTGTCGATCCCGCTAGCTTCAACGTCTGGAAGGATGAAGCATTTGAGACTTGGT 1733
| || || || ||||| || || ||||| |||||||| || ||||| ||||||| |||||
Sbjct 1675 CGACGATCGTGGATCCAGCCAGTTTCAAAGTCTGGAAAGACGAAGCGTTTGAGATTTGGT 1734
Query 1734 CAAGAAGCTGGGCTAACTTGTACCCAGAAGCCGACCCTTCCAGAAACTTGCTCGAGGAGG 1793
|||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1735 CAAGAAGCTGGGCTAATTTGTACCCAGAAGATGACCCTTCTAGAAAATTGCTCGAGGAGG 1794
Query 1794 TGAAGAACAGCTACTATTTGGTAAGCTTGGTGGAGAACGATTACATCAATGGTGACATAT 1853
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 1795 TGAAGAACAGCTACTATTTGGTAAGCTTAGTGGACAACGATTACATCAATGGTGATATAT 1854
Query 1854 TCGCGGTGTTTGCT-GATCTTTGAGAAAATCAA 1885
| || || |||||| ||||| ||||||| |||
Sbjct 1855 TTGCTGTCTTTGCTTGATCTCCGAGAAAACCAA 1887
> Ahg346222 jgi|Araly1|346222|fgenesh1_pg.C_scaffold_4002564
Length=1068
Score = 1256 bits (680), Expect = 0.0
Identities = 713/729 (98%), Gaps = 1/729 (0%)
Strand=Plus/Plus
Query 1057 TACTAAGGAAGATGTGCGCCCCATTTTCTGGGCAAACCGTCCAAAGAGCTACATTTCTAG 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 TACTAAGGAAGATGTGCGCCCCATTTTCTGGGCAAACCGTCCAAAGAGCTACATTTCTAG 338
Query 1117 AACCAAGGGCTGGGAAGATTTCCCACAAGGCCGGTGGGGTGATTCACGCAGTGCTTCATA 1176
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 339 AACCAAGGGCTGGGAAGACTTCCCACAAGGCCGGTGGGGTGATTCACGCAGTGCTTCATA 398
Query 1177 TGGTGCACTCTCGGATCATCAGTTCTCACGTCCGCGAGCACGTGACAAGAAGCTTCAACA 1236
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 399 TGGTGCACTCTCGGATCATCAGTTCTCACGTCCACGAGCACGTGACAAGAAGCTTCAACA 458
Query 1237 AGAATGGGTTGTCCCACTGAAAAGTGTTGAAGATATTCAGGAGAAATTCAAGGAGCTCTG 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AGAATGGGTTGTCCCACTGAAAAGTGTTGAAGATATTCAGGAGAAATTCAAGGAGCTCTG 518
Query 1297 CCTTGGAAACCTTAAAAGCAGTCCCTGGTCTGAATTAGATGGACTCCAGCCAGAGACAAG 1356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCTTGGAAACCTTAAAAGCAGTCCCTGGTCTGAATTAGATGGACTCCAGCCAGAGACAAA 578
Query 1357 GATAATAAACGAGCAACTGATAAAAGTCAACTCCAAAGGCTTCTTGACCATCAATAGCCA 1416
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 579 GATAATAAACGAGCAACTGGTAAAAATCAACTCCAAAGGCTTCTTGACCATCAATAGCCA 638
Query 1417 ACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACTGTTGGATGGGGAGGTCCTGTTGG 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 ACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACTGTTGGATGGGGAGGTCCTGTTGG 698
Query 1477 ATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGCAGT 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 ATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGCAGT 758
Query 1537 GGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGGCTGTGAACAAAGGAGAACA 1596
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 759 GGTCGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGTCTGTGAACAAAGGAGAAAA 818
Query 1597 GTGGGTATCGAACACTGCCCAAGCTGATGTGAATGCTGTAACTTGGGGAGTTTTCCCGGC 1656
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 819 CTGGGTATCGAACACTGCCCAAGCTGATGTGAATGCTGTTACTTGGGGAGTTTTCCCGGC 878
Query 1657 TAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAACGTCTGGAAGGATGA 1716
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 879 TAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAAAGTCTGGAAGGATGA 938
Query 1717 AGCATTTGAGACTTGGTCAAGAAGCTGGGCTAACTTGTACCCAGAAGCCGACCCTTCCAG 1776
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 939 AGCATTTGAGACTTGGTCAAGAAGCTGGGCTAACTTGTACCAAGAAGCTGACCCTTCCA- 997
Query 1777 AAACTTGCT 1785
| | |||||
Sbjct 998 AGATTTGCT 1006
Score = 178 bits (96), Expect = 2e-43
Identities = 152/176 (86%), Gaps = 16/176 (9%)
Strand=Plus/Plus
Query 856 CGAA-GAAGCTGTGAAAGCCTATGGTATTCACCTTGGAACAGAGATGTGTAAAAAGATGT 914
|||| ||||||||||||||||||||| |||||||||| |||||||| |||| ||| |||
Sbjct 119 CGAATGAAGCTGTGAAAGCCTATGGTCTTCACCTTGGGACAGAGATTTGTATAAATATG- 177
Query 915 TGGCTCATGGAGTCAAGTCTCTTCATCTCTACACATTGAACATGGAGAA-ATCTGCTCTT 973
| || || ||||||||||||||||||||||||||||||||| | | |||||
Sbjct 178 T---TC----AG----GTCTCTTCATCTCTACACATTGAACATGGAGAACA-CAACTCTT 225
Query 974 GCAATATTGATGAATCTTGGTATGATTGATGAGTCCAAAA-TTTCTCGTTCTTTAC 1028
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 226 GCAATATTGATGAATCTTGGTATGATTGATGAGTCCAAAAATTTCTCCTTCTTTAC 281
> Ahg942778 jgi|Araly1|942778|scaffold_603322.1
Length=531
Score = 761 bits (412), Expect = 0.0
Identities = 445/461 (97%), Gaps = 2/461 (0%)
Strand=Plus/Plus
Query 1296 GCCTTGGAAACCTTAAAAGCAGTCCCTGGTCTGAATTAGATGGACTCCAGCCAGAGACAA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GCCTTGGAAACCTTAAAAGCAGTCCCTGGTCTGAATTAGATGGACTCCAGCCAGAGACAA 131
Query 1356 GGATAATAAACGAGCAACTGATAAAAGTCAACTCCAAAGGCTTCTTGACCATCAATAGCC 1415
||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 132 AGATAATAAACGAGCAACTGGTAAAAATCAACTCCAAAGGCTTCTTGACCATCAACAGCC 191
Query 1416 AACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACTGTTGGATGGGGAGGTCCTGTTG 1475
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 192 AACCATCAGTCAACGCCGAGAGATCTGATTCCCTAACTGTTGGGTGGGGAGGTCCTGTTG 251
Query 1476 GATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGCAG 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGCAG 311
Query 1536 TGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGGCTGTGAACAAAGGAGAAC 1595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGGCTGTGAACAAAGGAGAAA 371
Query 1596 AGTGGGTATCGAACACTGCCCAAGCTGATGTGAATGCTGTAACTTGGGGAGTTTTCCCGG 1655
| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 372 ACTGGGTATCGAACACTGCCCAATCTGATGTGAATGCTGTTACATGGGGAGTTTTCCCGG 431
Query 1656 CTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAACGTCTGGAAGGATG 1715
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 432 CTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAAAGTCTGGAAGGATG 491
Query 1716 AAGCATTTGAG-ACTTGGTCAAGAAGCTGGGCTAACTTGTA 1755
|||||||| || ||||||| |||| ||||||||||||||||
Sbjct 492 AAGCATTT-AGGACTTGGTGAAGATGCTGGGCTAACTTGTA 531
> Ahg937251 jgi|Araly1|937251|scaffold_501442.1
Length=463
Score = 673 bits (364), Expect = 0.0
Identities = 403/422 (95%), Gaps = 2/422 (0%)
Strand=Plus/Plus
Query 1335 ATGGACTCC-AGCCAGAGACAAGGATAATAAACGAGCAACTGATAAAAGTCAACTCCAAA 1393
||||||||| | |||||||||| |||||||||||| |||||| ||||| |||||||||||
Sbjct 43 ATGGACTCCTA-CCAGAGACAAAGATAATAAACGATCAACTGGTAAAAATCAACTCCAAA 101
Query 1394 GGCTTCTTGACCATCAATAGCCAACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACT 1453
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 GGCTTCTTGACCATCAACAGCCAACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACT 161
Query 1454 GTTGGATGGGGAGGTCCTGTTGGATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGC 1513
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 162 GTTGGGTGGGGAGGTCCTGTTGCATATGTATACCAAAAGGCTTATCTAGAGTTCTTCTGC 221
Query 1514 TCAAAGGAGAAATTAGATGCAGTGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTAC 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TCAAAGGAGAAATTAGATGCAGTGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTAC 281
Query 1574 ATGGCTGTGAACAAAGGAGAACAGTGGGTATCGAACACTGCCCAAGCTGATGTGAATGCT 1633
||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 282 ATGGCTGTGAACAAAGGAGAAAACTGGGTATCGAACACTGCCCAATCTGATGTGAATGCT 341
Query 1634 GTAACTTGGGGAGTTTTCCCGGCTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCT 1693
|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 342 GTTACATGGGGAGTTTTCCCGGCTAAGGAAATCATTCAACCAACCATTGTCGATCTCGCT 401
Query 1694 AGCTTCAACGTCTGGAAGGATGAAGCATTTGAGACTTGGTCAAGAAGCTGGGCTAACTTG 1753
|||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 402 AGCTTCAAAGTCTGGAAGGATGAAGCATTTGGGACTTGGTGAAGAAGCTAGGCTAACTTG 461
Query 1754 TA 1755
||
Sbjct 462 TA 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76599482695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5