BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44230.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483546 jgi|Araly1|483546|fgenesh2_kg.4__2606__AT2G44230.1 2612 0.0
> Ahg483546 jgi|Araly1|483546|fgenesh2_kg.4__2606__AT2G44230.1
Length=1642
Score = 2612 bits (1414), Expect = 0.0
Identities = 1567/1642 (95%), Gaps = 6/1642 (0%)
Strand=Plus/Plus
Query 4 AATATCAAAATGGGTAACAATTCCTCTGCTCAAAGCTCAACACCTTCTTTGCCGATTGAT 63
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AATATCAAAATGGGTAACAAATCCTCTGCTCAAAGTTCAACACCTTCTTTGCCGATTGAT 60
Query 64 TCTACCTTCAATCTTCCTTCTCCATTACCATCTTGGCCTTCAGGAGAAGGATTTGCGAAA 123
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 61 TCTACCTTCAATCTTCCTTCTTCATTACCATCTTGGCCTCCAGGAGAAGGATTTGGGAAA 120
Query 124 GGGAGAATCGATTTGGGAGGTCTTGAAGTTAGCCAAGTAGATACATTTAACAAAGTATGG 183
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 121 GGGAGAATCGATTTGGGAGGTCTTGAAGTTTTCCAAGTAGAAACATTTAACAAAGTATGG 180
Query 184 ACTGTATACGAAGGAGGACAAGATAATCTCGGAGCCACTTTCTTTGAGCCGTCTTCAGTA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTGTATACGAAGGAGGACAAGATAATCTCGGAGCCACTTTCTTTGAGCCGTCTTCAGTA 240
Query 244 CCTGAAGGCTTTTCGATTCTCGGGTTCTACGCTCAACCTAATAACCGCAAGCTTTTCGGA 303
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTGAAGGCTTTACGATTCTCGGGTTCTACGCTCAACCTAATAACCGCAAGCTTTTCGGA 300
Query 304 TGGACACTTGTGGGAAAAGACCTCTCAGGCGACTCTTTAAGACCGCCGGTGGATTATCTT 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGACACTTGTCGGAAAAGACCTCTCAGGCGACTCTTTAAGACCGCCGGTGGATTATCTT 360
Query 364 CTCCTTTGGAGCGGCAAATCTACAAAGGTAGAGAACAACAAGGTTGAAACAGGATACTTT 423
|| |||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||
Sbjct 361 CTTCTTTGGAGCGGCAAATCTACAAAGGTAGGGAATAACGGGGTTGAAACTGGATACTTT 420
Query 424 TGGCAGCCTGTACCACCTGATGGTTACAATGCAGTGGGTCTAATCG-TGACAACCTC-GG 481
|||||||||||||| ||||||| ||||||||||||||||||| ||| || ||||||| ||
Sbjct 421 TGGCAGCCTGTACCTCCTGATGATTACAATGCAGTGGGTCTAGTCGTTG-CAACCTCAGG 479
Query 482 ATGAGAAACCTCCTCTAGACAAGATCCGTTGTGTCCGTTCCGACCTGACCGATCAATCCG 541
|||||||||||||||||| |||||||||||||||||||| || |||| |||||||| |
Sbjct 480 -TGAGAAACCTCCTCTAGAAAAGATCCGTTGTGTCCGTTCTGATTTGACAGATCAATCGG 538
Query 542 AGCCTGACGCTCTGATATGGGAAACTAATGGGTTTAGCGTTTCGAGTTCTAAACCTGTTA 601
|| ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 539 AGTCTGACGCTCAGATATGGGAATCTAATGGGTTTAGCATTTCGAGTTCTAAACCTGTTA 598
Query 602 ACAGAGGAACACAAGCCTCTGGAGTCAGCGTTGGCACGTTCTTCTCAAACTCTCCAAATC 661
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 599 ACAGAGGAACACAAGCTTCTGGTGTCTGCGTTGGCACGTTCTTCTCAAACTCTTCAAATC 658
Query 662 CGGCCTTACCTTGTCTGAAAAACAACAACTTCGATTTTTCTTGTATGCCAAGCAAGCCCC 721
| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 659 CAACCTTACCTTGTCTGAAAAACAACAAATTCGATTTTTCTTGCATGCCAAGCAAGCCCC 718
Query 722 AGATCGACGCTCTGTTTCAAACTTACGCCCCTTGGATCTATTTCCACAAAGATGAGAAGT 781
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGATCGATGCTCTGTTTCAAGCTTACGCCCCTTGGATCTATTTCCACAAAGATGAGAAGT 778
Query 782 ATCTCCCATCATCTGTCAACTGGTTCTTCAGCAACGGTGCCTTGCTTTACAAGAAAGGTG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCTCCCATCATCTGTCAACTGGTTCTTCAGCAACGGTGCCTTGCTTTACAAGAAAGGTG 838
Query 842 ATGAATCAAACCCAGTTCCAGTTGAACCAAACGGTTTAAACCTTCCCCAAGGTGAATTCA 901
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 839 ATGAATCAAACCCAGTTCCAGTCGAACCAAACGGTTTAAACCTTCCCCAAGGTGAATCCA 898
Query 902 ACGACGGTCTGTATTGGTTAGACCTACCTGTTGCTTCTGACGCAAGAAAACGAG-TCCAG 960
|||| ||||| || |||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 899 ACGATGGTCTCTACTGGTTAGACCTACCTGTTGCTTCTGACGCAAGGAAACGAGTTCAAG 958
Query 961 TGTGGTGATTTGCAGAGCATGGAAGTGTATCTGCACATAAAACCTGTTTTCGGTGGAACA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 -GTGGTGATTTGCAGAGCATGGAAGTGTATCTGCACATAAAACCTGTTTTCGGTGGAACA 1017
Query 1021 TTCACAGACATAGCCGTGTGGATGTTTTATCCGTTCAACGGCCCGTCAAGAGCCAAGCTC 1080
|||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1018 TTCACAGACATAGCTGTGTGGATATTTTATCCGTTCAACGGCCCGTCACGAGCCAAGCTC 1077
Query 1081 AAAGCCGCTTCAATCCCGTTGGGGAGAATCGGCGAACACATTGGAGACTGGGAACATTTC 1140
|| |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGGCCGCTACAATTCCGTTGGGGAAAATCGGCGAACACATTGGAGACTGGGAACATTTC 1137
Query 1141 ACTCTTCGAATAAGTAACTTCAGCGGCAAGCTACATCGGATGTATCTGTCGCAACACAGC 1200
||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1138 ACTCTCCGAATAAGTAACTTCAACGGCAAGTTACATCGGATGTATCTGTCGCAACACAGC 1197
Query 1201 GGAGGAAGCTGGGCTGATGCTTCCGAGATCGAGTTTCAAGGCGGAGGAAACAAACCAGTG 1260
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1198 GGAGGAAGCTGGACTGATGCTTCGGAGATCGAGTTTCAAGGCGGAGGAAACAAACCGGTG 1257
Query 1261 GCTTACGCTTCTTTGAATGGACACGCAATGTACTCAAAACCGGGACTTGTGTTGCAAGGC 1320
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1258 GCTTATGCTTCTTTGAATGGACATGCAATGTACTCAAAACCGGGACTTGTGTTGCAAGGC 1317
Query 1321 AAAGACAATGTGGGGATCAGGAACGATACTGGAAAGAGTGAAAAAGTGATTGATACGGCG 1380
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1318 AAAGACAATGTGGGGATCAGGAACGATACCGGAAAGAGTGAAAAAGTAATTGATACGGCG 1377
Query 1381 GTTAGGTTCAGGGTTGTTGCAGCAGAGTATATGAGAGGAGAATTGGAGGAGCCGGCTTGG 1440
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1378 GTTAGGTTCAGGGTTGTTGCAGCAGAGTATATGAGAGGAGAAGTGGAGGAGCCGGCTTGG 1437
Query 1441 TTGAATTATATGAGACATTGGGGACCAAAGATTGATTATGGTCATGAAAATGAGATTAGA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTGAATTATATGAGACATTGGGGACCAAAGATTGATTATGGTCATGAAAATGAGATTAGA 1497
Query 1501 GGTGTGGAGAAGATTATGGTTGGGGAGAGTCTTAAGACTACGTTTAGGAGTGCGATTAAA 1560
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1498 GGTGTGGAGAAGATTATGGTTGGGGAGAGTCTTAAGAATACGTTTAGGAGTGCGATTAAA 1557
Query 1561 GGATTGCCTAACGAAGTTTTTGGAGAGGAAGGACCTACTGGTCCGAAGTTGAAGCGGAAT 1620
|||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||
Sbjct 1558 GGATTGCCTAACGAAGTTTTTGGAGAGGAAGGGCCTACCGGTCCAAAGCTGAAGCGGAAT 1617
Query 1621 TGGTTAGGTGATGAAGTTTGAA 1642
||||||||||||||||||||||
Sbjct 1618 TGGTTAGGTGATGAAGTTTGAA 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5