BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44650.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935404 jgi|Araly1|935404|scaffold_403392.1 737 0.0
Ahg935405 jgi|Araly1|935405|scaffold_403393.1 370 1e-101
> Ahg935404 jgi|Araly1|935404|scaffold_403392.1
Length=481
Score = 737 bits (399), Expect = 0.0
Identities = 453/479 (95%), Gaps = 3/479 (1%)
Strand=Plus/Plus
Query 557 GGAGGAAGAAGAAGATCTGCTTCTGCAAAAAACCTTATCCTGCTATGGCTTCCACTTTCG 616
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GGAGGAAGAAGAAGATCTGCTTCTGCAAAAAACCTTATCCTGCTATGGCCTCCACTTTCG 60
Query 617 TCTGCTCTCTACCAAATCCTTTCTTTGCTTTTCCGGTCAAAGCAACTACTCCTTCGACGG 676
| ||||||||| |||||||||||||| |||||||||||| | ||||||||||| || |
Sbjct 61 --T-CTCTCTACCCAATCCTTTCTTTGCCTTTCCGGTCAAAACCACTACTCCTTCTACAG 117
Query 677 CTAACCATACGCTTCTCGGAAGTCGAAGAGGTTGTCTTAGAATCAAAGCGATTTCCACTA 736
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTAACCATAAGCTTCTCGGAAGTCGAAGAGGTTGTCTTAGAATCAAAGCGATTTCCACTA 177
Query 737 AATGGGAACCGACAAAGGTTGTTCCTCAGGCAGACAGAGTTCTTGTTCGTCTTGAAGATC 796
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 AATGGGAACCGACAAAGGTTGTTCCTCAGGGAGACAGAGTTCTTGTTCGTCTTGAAGATC 237
Query 797 TTCCTATTAAATCCTCAGGTGGAGTATTGTTGCCTAAAGCAGCTGTGAAGTTTGAGAGAT 856
||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 238 TTCCTATGAAATCGTCGGGTGGAGTATTGTTGCCTAAAGCAGCTGTGAAGTTTGAGAGGT 297
Query 857 ACCTAACAGGAGAGATTATATCTGTTGGTTCTGAGGTTGGACAACAAGTTGGACCTGGAA 916
|| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 298 ACTTAACAGGAGAGGTTATCTCTGTTGGTTCTGAGGTTGGACAACAAGTTGGTCCTGGAA 357
Query 917 AGAGGGTTTTGTTCTCTGATGTGAGCGCTTATGAGGTCGATTTGGGAACCGATGCTAGGC 976
||| |||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 358 AGAAGGTTCTCTTCTCTGACGTGAGCGCTTATGAGGTCGATTTGGGAACCGATGCTAGAC 417
Query 977 ATTGCTTCTGTAAAGAGAGTGACTTGTTGGCCCTCGTTGAGTGAAGTCTTGTCCAAGAG 1035
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATTGCTTCTGCAAAGAGAGTGACTTGTTGGCCCTCGTTGAGTGAAGTCTTGTCCAAGAG 476
> Ahg935405 jgi|Araly1|935405|scaffold_403393.1
Length=1565
Score = 370 bits (200), Expect = 1e-101
Identities = 262/291 (90%), Gaps = 8/291 (3%)
Strand=Plus/Plus
Query 2 TGCATTCCGTGGTAATGTGGCTCGGCTTTGCAGCTCAATACAC--A-GATTATAAGGCGC 58
|||||||| ||||||||||||| ||||||| ||||| ||||| | || |||||| |
Sbjct 1268 TGCATTCCATGGTAATGTGGCTTGGCTTTGTGGCTCAGTACACAAACAATAATAAGGTTC 1327
Query 59 AGAAGAAGGAGACTAGTGAAATCAAGAGCAAGTTTAGGATTGGATGTTTTGAGAAGAGCT 118
||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 1328 ---AGAAGGAGAATAGAGTAAGCAAGAGCAAGTTTAGGATTGGATGTTTTGAGAAGAGCT 1384
Query 119 ATCTAATGGGTTTGA-TTATAGTAGAGATAGTGTCTCAATTCTTGCATCCGTATTTTCTA 177
||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 1385 ATCTAATGGGTTT-AGTTATAGTAGAGATAGTGTCTCAGTTCTTGCATCCATATTATCTA 1443
Query 178 GGTGATAAGTTGCCATTTTTGCCTTTAATGTTGATCTCAACATATTGTACCGTTGGTATT 237
|||||||| || ||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 1444 GGTGATAAATTTCCATTTTTGCCGTTAATGTTGATCTCAACATATTGTACCATTGGTACT 1503
Query 238 ATGTACTCTTGGATTTGGCAGCTCCGGAAGATCCTGACATGACATATAGAT 288
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATGTACTCTTGGATTTGGCAGCTCCGGAAGATCCTGACATGACATATAGAT 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5