BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44670.1 Length=768 Score E Sequences producing significant alignments: (Bits) Value Ahg483597 jgi|Araly1|483597|fgenesh2_kg.4__2657__AT2G44670.1 924 0.0 > Ahg483597 jgi|Araly1|483597|fgenesh2_kg.4__2657__AT2G44670.1 Length=680 Score = 924 bits (500), Expect = 0.0 Identities = 635/694 (91%), Gaps = 34/694 (5%) Strand=Plus/Plus Query 95 AGCAAATGGCTTCGTATTACTCTGGTTTTTTGGGTTGTGAAGAGCCACACTTTTTGGAAT 154 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 AGCAAATGGCTTCGTATTACTCTGGTTTTTTTAGTTGTGAAGAGCCACACTTTTTGGAAT 60 Query 155 CGTGTTCTCTTTGCCGGAAACACCTTGGTCTTAACTCCGATATCTTCATGTACAGAGGAG 214 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTGTTCTCTTTGCCGTAAACACCTTGGTCTTAACTCCGATATCTTCATGTACAGAGGAG 120 Query 215 ACAAGGCTTTTTGTAGCAACGAGTGTAGAGAAGAACAGATTGAATCTGATGAAGCTAAGG 274 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACAAGGCCTTTTGTAGCAAAGAGTGTAGAGAAGAACAGATTGAATCTGATGAAGCTAAGG 180 Query 275 AGAGAAAGTGGAAAAAATCTTCAAGATCTCTCCGGAAAAATTCTTCTGAAACTAAAGAAT 334 |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 181 AGAGAAAGTGGAAAAATTCTTCAAGATCTCTCCGCAAAAAATCTTCTGAAACTAAAGAAT 240 Query 335 CCGCCGCCGGAAACACCGTACGGACAGGAACTCTCGTCGTGGCTTAGTAGAAGCTTCAGT 394 | |||||||| |||||||||||||||||||||||||||||||||||||||||| || | | Sbjct 241 CTGCCGCCGGTAACACCGTACGGACAGGAACTCTCGTCGTGGCTTAGTAGAAGTTTTAAT 300 Query 395 TACATAA---T---CAAGCAAATAGTCtttttttCTTCT---ATATAAATACCTTTTTGT 445 ||||||| | |||||||||||| ||||||| || | |||||||||||||||||| Sbjct 301 TACATAAAAATTATCAAGCAAATAGTTTTTTTTTTTTTTTTTATATAAATACCTTTTTGT 360 Query 446 CTAAAATCTATAAACCCTCCTAAAACCACTT-ATATCTCCAAAGCCTCTAAAAGATTTGC 504 ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| Sbjct 361 CTAAAATCTATAAACCCTCCTAAAACCACTTTATATCTCCAAAGC-T--AAAAGATTTGC 417 Query 505 TCTGTTTCTATTGATCTTTCTATGGATCGGAGATAACTAGTTTTCTAATT-CCGGTTGTC 563 |||||||||||| |||||| |||||||||||||| |||||||||| |||| ||| ||||| Sbjct 418 TCTGTTTCTATTCATCTTTTTATGGATCGGAGATGACTAGTTTTCAAATTTCCGATTGTC 477 Query 564 GGAATCTGAGAAATTGTAGATCTGGTTTATGTAAATGAATGTGGAGTTTTGGG-G-GCAG 621 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 478 GGAATCTGAGAAATTGTAGATCTGGTTTATGTAAATGAATGTGGAGTTTTGGGAGAG-AG 536 Query 622 AGAGAAAGAAAGATGCTAATAATTTT-GGCTGTGTGATGTGATG-G-T--TTT-GTAATC 675 |||||||||||||||| ||||||||| ||||||||||||||||| | | ||| |||||| Sbjct 537 AGAGAAAGAAAGATGCCAATAATTTTTGGCTGTGTGATGTGATGTGATGGTTTTGTAATC 596 Query 676 TGGGGTTGAAATTTTGTTCGATGTT-CCATAATAAACAGAGCATAACAACTATGTTCTTA 734 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | Sbjct 597 TGGGGTTGAAATTTTGTTCGATGTTTCCATAATAAACAGAGCATAAC---TATGTTCT-A 652 Query 735 ATAAATATAAATTCAATTTCTGTATCTGCGTGTG 768 |||||| | |||||||| ||||| |||||| Sbjct 653 ATAAAT-T-----CAATTTCTTTATCTTCGTGTG 680 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28325327331 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5