BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G44790.1 Length=962 Score E Sequences producing significant alignments: (Bits) Value Ahg483607 jgi|Araly1|483607|fgenesh2_kg.4__2667__AT2G44790.1 531 5e-150 Ahg952086 jgi|Araly1|952086|scaffold_36400003.1 416 1e-115 > Ahg483607 jgi|Araly1|483607|fgenesh2_kg.4__2667__AT2G44790.1 Length=827 Score = 531 bits (287), Expect = 5e-150 Identities = 349/377 (93%), Gaps = 12/377 (3%) Strand=Plus/Plus Query 469 CTCCGGCCACTCCCACGCCACCTTCTTCAACTCCGGGAACTCCTACCACACCGGAATCAC 528 |||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||| Sbjct 426 CTCCGGGAACTCCCACGCCACCGTCTACAACTCCGGGAACTCCTACCACACCGGACTCAC 485 Query 529 CTCCGTCTGGCGGATcacccacacccaccacacccacaccTGGTGCAGGTTCAACTTCTC 588 ||||| ||||||||| ||||||||||||||||||||| | |||| ||||| | | Sbjct 486 CTCCGGCTGGCGGAT------CACCCACCACACCCACACCTGATTCAGGGTCAAC-T-T- 536 Query 589 CTCCTCCTCCACCAAAGGCAAGTGGTGCGTCTAAGGGAGTGATGAGTTACGTTTTGGTGG 648 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | Sbjct 537 CTCCTCCTCCACCAAAGCCAAGTGGTGCGTCAAAGGGAGTGATGAGTTACGTTTTGGTCG 596 Query 649 GAGTCTCGATGGTTTTGGGTTATGGTTTGTGGATGTAATTGGTTTAGAGAGCCAGGGTGG 708 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 597 GAGTCTCGATGGTTTTGGGTTATGGTTTGTGGATGTAATTGGTTTAGTGAGCCAGGGTGG 656 Query 709 AGTCAGTGCTTTTGCCTTTTTAAATTATTTTGGTTTTTGGTTGTAAGAGAATTTGGGTTT 768 ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| | Sbjct 657 AGTCAGTGCTTTTGC-TTTTTAAATTATTTTGGTCTTTGGTTGTAAGAGAAGTTGGGTAT 715 Query 769 GTGTGCCACGTCAGAAGCTCTTCATTATTCGTAGGATTTTTATTATCTCGGCATTTGATT 828 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 716 GTGTGCCACGTCAGAAGCTCTTCATTATTCGTAGGATTTT-ATTAT-TCGGCATTTGATT 773 Query 829 ATCGTTATCATCATCAT 845 ||||||||||||||||| Sbjct 774 ATCGTTATCATCATCAT 790 Score = 379 bits (205), Expect = 2e-104 Identities = 314/362 (87%), Gaps = 26/362 (7%) Strand=Plus/Plus Query 1 GTTATATAATGACACCATAACCATTTCTTCTCTTCACAATCTTTAC---AAGAATATCTC 57 ||||||||||||||||||||||||||||||||| ||||| ||| || || |||||||| Sbjct 1 GTTATATAATGACACCATAACCATTTCTTCTCTGCACAACCTTAACAATAATAATATCTC 60 Query 58 TCTTCTACAGTAAACAAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGTAGCCGCCG 117 ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 TCTTCTA-AGT--A-AAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGCAGCCGCCG 116 Query 118 CAACTGCTCTTCTCCTAGTTCTGACCATTGTCCCGGGCGCAGTAGCTGTGACTTACACTA 177 ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| Sbjct 117 CAACTGCTCTTCTCCTAGTCCTGACCATTGTCCCGGCCACAGTAGCTGTGACTTACACGG 176 Query 178 TTG-A-ATGGAC--CA------C--TGGTGTGGACTACTCAGGTTGGGCTACCGGAAAGA 225 | | | | || | || | ||||||||||||| ||| ||||| | ||||||||| Sbjct 177 TGGGAGACGGTCAACAATGGGACAGTGGTGTGGACTACACAGTTTGGGTTGCCGGAAAGA 236 Query 226 CTTTCAGGGTTGGTGACATTCTAGA-----GTTCAAGTATGGTTCT-TCCCACACGGTGG 279 ||||||||||||||||| ||||||| ||||||||||||| | || ||| |||||| Sbjct 237 CTTTCAGGGTTGGTGACGTTCTAGAAACAAGTTCAAGTATGGT-CGATCACACTCGGTGG 295 Query 280 ATGTGGTTGACAAAGCCGGATATGATGGCTGCGACGCCTCCTCCTCGACTGAGAACCATT 339 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 296 ATGTGGTTGACAAAGCCGGATATGATGGCTGCGATGCCTCCTCCTCGACTGAGAACCATT 355 Query 340 CC 341 || Sbjct 356 CC 357 Score = 99.0 bits (53), Expect = 6e-20 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 435 CTAGCCGTTAATGTCGTAGCCGGTTCTGCCGGACCTCCGGCCACTCCCACGCCACCTTCT 494 ||||||| || |||| |||||| ||||||||||||||||||||||||||||| || || Sbjct 362 CTAGCCGCTACTGTCTTAGCCGCCTCTGCCGGACCTCCGGCCACTCCCACGCCCCCGTCA 421 Query 495 TCAACTCCGGGAACTCC 511 ||||||||||||||||| Sbjct 422 TCAACTCCGGGAACTCC 438 > Ahg952086 jgi|Araly1|952086|scaffold_36400003.1 Length=523 Score = 416 bits (225), Expect = 1e-115 Identities = 301/335 (90%), Gaps = 15/335 (4%) Strand=Plus/Plus Query 372 GTAGGAATAAACTATTTCATCTGTTCTACACCTGGTCACTGCAGAACCAATGGCGGCATG 431 ||||||||||| |||||||||||| |||||||||||||||| | ||||| |||||| Sbjct 204 GTAGGAATAAAGTATTTCATCTGTCCTACACCTGGTCACTG-TG--CCAAT---GGCATG 257 Query 432 AAGCTAGCCGTTAATGTCGTAGCCGGTTCTGCCGGACCTCCGGCCACTCCCACGCCACCT 491 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 258 AAGCTAGCCGTTACTGTCGTAGCCGCCTCTGCCGGACCTCCGGCCACTCCCACGCCCCCG 317 Query 492 TCTTCAACTCCGGGAACTCCTACCACACCGGAATCACCTCCGTCTGGCGGATcacccaca 551 ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 318 TCTACAACTCCGGGAACTCCTACCACACCGGACTCACCTCCGGCTGGCGGATCACCCAC- 376 Query 552 cccaccacacccacaccTGGTGCAGGTTCAACTTCTCCTCCTCCTCCACCAAAGGCAAGT 611 | || || || ||||||| | |||| ||||||||||||||||| ||||||| ||||| Sbjct 377 C--AC-AC-CC-ACACCTGATTCAGGGTCAACTTCTCCTCCTCC---ACCAAAGCCAAGT 428 Query 612 GGTGCGTCTAAGGGAGTGATGAGTTACGTTTTGGTGGGAGTCTCGATGGTTTTGGGTTAT 671 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 429 GGTGCGTCAAAGGGAGTGATGAGTTACGTTTTGGTCGGAGTCTCGATGGTTTTGGGTTAT 488 Query 672 GGTTTGTGGATGTAATTGGTTTAGAGAGCCAGGGT 706 | |||||||||||||||||||||| |||||||||| Sbjct 489 GCTTTGTGGATGTAATTGGTTTAGTGAGCCAGGGT 523 Score = 209 bits (113), Expect = 3e-53 Identities = 179/208 (86%), Gaps = 16/208 (8%) Strand=Plus/Plus Query 54 TCTCTCTTCTACAGTAAACAAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGTAGCC 113 ||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||| Sbjct 1 TCTCTCTTCTA-AGT--A-AAAAAATGGCAATGAATGGTTTGTCCAAGATGGCTGCAGCC 56 Query 114 GCCGCAACTGCTCTTCTCCTAGTTCTGACCATTGTCCCGGGCGCAGTAGCTGTGACTTAC 173 ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| Sbjct 57 GCCGCAACTGCTCTTCTCCTAGTCCTGACCATTGTCCCGGCCACAGTAGCTGTGACTTAC 116 Query 174 ACTATTG-A-ATGGAC--CA------C--TGGTGTGGACTACTCAGGTTGGGCTACCGGA 221 || | | | | || | || | ||||||||||||| ||| ||||| | ||||| Sbjct 117 ACGGTGGGAGACGGTCAACAATGGGACAGTGGTGTGGACTACACAGTTTGGGTTGCCGGA 176 Query 222 AAGACTTTCAGGGTTGGTGACATTCTAG 249 |||||||||||||||||||||||||||| Sbjct 177 AAGACTTTCAGGGTTGGTGACATTCTAG 204 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35721173229 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5